Rroxscaffold_7G00174150

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001867
Physical Location & Seq
Reverse (-)
13904627 .. 13908072
3446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174150.1

Sequence Viewer

Length: 729 bp
ATGGCTCGTTCAATCTCTCATTTTCTAATTACTGCCTTCCTTGTTCTTGTTGCTTTGGATCTCTGCCTTGTTCATGAGGTCATAAGTCAGAGGCTTAACTGCTTGCCCCTCCCGAACGTGAATGATACTGACCGCCTTCAGTTTGCTTTGAACTTGGAATTCTTGGAGGCTGAGTTTTTCCTGTTTGGTGCTCTTGGAAGAGGGCTCGACAGTATCAGTCCAAACTTGGCCGGAGATGGTCCGCCTCCTTCTGGTGTGCAGAAGGCTTTGCTCAACCCTGTTGTTGCTCGAATCATTGAGGAATTCGGTTATCAACAAGTTGGTCATATCAGAGCAATTATCGATGCAGTAGGAGGGATTCCGAGGCCTCTGTTAAACATCAGCCGAGAAAATTTTGCGAGAGCCAGTCAATTTGTACCTCCGTATCCGCTCACAGTGGCCGAGTTCACAAATCGTATTTCAGCACGTCGGAACTTCTTCGGTGGGTGTGGCAACAAAGATGAAGGCATCCTGTTACCAAACAACACGCTCGGGGCTGAGAACCGGACGAGAAGTAACATCCTATCGGCGGATTTCAATTCAGGGTCGTATACCAGAACACCAGCTGAGATCTTGAGGATTGTGTATGGAGGCAATGAATCTGTGGCTGGCGGATTTTTCCCTCAAGGTGCTAATGGAAACATTGCAATGCGCTACCTCAACAATGGTACCGCCAGCTCAAAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

242

Amino Acids

26.19

Weight (kDa)

6.83

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 41 - 139 5e-15 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 707
AccB1I GGYRCC 1 cut(s) 707
AccBSI CCGCTC 1 cut(s) 430
AccI GTMKAC 1 cut(s) 590
AciI CCGC 6 cut(s) 133, 242, 428, 569, 651, 711
AclWI GGATC 1 cut(s) 66
AcoI YGGCCR 2 cut(s) 228, 438
AcsI RAATTY 3 cut(s) 158, 302, 391
AcuI CTGAAG 1 cut(s) 122
AfaI GTAC 2 cut(s) 417, 709
AfiI CCNNNNNNNGG 2 cut(s) 251, 568
AgsI TTSAA 3 cut(s) 12, 151, 577
AjiI CACGTC 1 cut(s) 467
AluBI AGCT 2 cut(s) 605, 717
AluI AGCT 2 cut(s) 605, 717
Alw21I GWGCWC 1 cut(s) 193
AlwI GGATC 1 cut(s) 66
Ama87I CYCGRG 1 cut(s) 530
AoxI GGCC 3 cut(s) 228, 365, 438
ApoI RAATTY 3 cut(s) 158, 302, 391
Asp700I GAANNNNTTC 1 cut(s) 476
Asp718I GGTACC 1 cut(s) 707
AspLEI GCGC 1 cut(s) 693
AspS9I GGNCC 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 1 cut(s) 239
BaeI ACNNNNGTAYC 4 cut(s) 407, 440, 691, 724
BanI GGYRCC 1 cut(s) 707
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 193
BccI CCATC 1 cut(s) 230
BciVI GTATCC 1 cut(s) 435
BfuI GTATCC 1 cut(s) 435
BglII AGATCT 1 cut(s) 609
Bme18I GGWCC 1 cut(s) 239
BmeT110I CYCGRG 1 cut(s) 530
BmgBI CACGTC 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 709
BmsI GCATC 2 cut(s) 334, 516
BpuEI CTTGAG 2 cut(s) 634, 648
Bsa29I ATCGAT 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 362
BsaWI WCCGGW 1 cut(s) 543
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 568
Bse1I ACTGG 1 cut(s) 405
Bse3DI GCAATG 3 cut(s) 640, 681, 693
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 2 cut(s) 507, 558
BseLI CCNNNNNNNGG 2 cut(s) 251, 568
BseMI GCAATG 3 cut(s) 640, 681, 693
BseMII CTCAG 3 cut(s) 162, 528, 597
BseNI ACTGG 1 cut(s) 405
BsgI GTGCAG 1 cut(s) 278
BshFI GGCC 3 cut(s) 230, 367, 440
BshNI GGYRCC 1 cut(s) 707
BshVI ATCGAT 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 2 cut(s) 231, 544
BslI CCNNNNNNNGG 2 cut(s) 251, 568
BsnI GGCC 3 cut(s) 230, 367, 440
BsoBI CYCGRG 1 cut(s) 530
Bsp1286I GDGCHC 2 cut(s) 193, 207
Bsp143I GATC 2 cut(s) 58, 609
BspACI CCGC 6 cut(s) 133, 242, 428, 569, 651, 711
BspANI GGCC 3 cut(s) 230, 367, 440
BspCNI CTCAG 3 cut(s) 163, 529, 598
BspDI ATCGAT 1 cut(s) 342
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 709
BspPI GGATC 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 707
BsrBI CCGCTC 1 cut(s) 430
BsrDI GCAATG 3 cut(s) 640, 681, 693
BsrI ACTGG 1 cut(s) 405
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 2 cut(s) 58, 609
BssNAI GTATAC 1 cut(s) 591
Bst1107I GTATAC 1 cut(s) 591
Bst4CI ACNGT 2 cut(s) 212, 436
Bst6I CTCTTC 1 cut(s) 193
BstC8I GCNNGC 3 cut(s) 104, 649, 715
BstDEI CTNAG 3 cut(s) 171, 537, 606
BstF5I GGATG 2 cut(s) 507, 558
BstHHI GCGC 1 cut(s) 693
BstKTI GATC 2 cut(s) 61, 612
BstMBI GATC 2 cut(s) 58, 609
BstX2I RGATCY 2 cut(s) 58, 609
BstYI RGATCY 2 cut(s) 58, 609
BstZ17I GTATAC 1 cut(s) 591
Bsu15I ATCGAT 1 cut(s) 342
BsuI GTATCC 1 cut(s) 435
BsuRI GGCC 3 cut(s) 230, 367, 440
BsuTUI ATCGAT 1 cut(s) 342
BtrI CACGTC 1 cut(s) 467
BtsCI GGATG 2 cut(s) 507, 558
BtsIMutI CAGTG 1 cut(s) 441
Cac8I GCNNGC 3 cut(s) 104, 649, 715
CciI TCATGA 1 cut(s) 73
CfoI GCGC 1 cut(s) 693
Cfr13I GGNCC 1 cut(s) 239
ClaI ATCGAT 1 cut(s) 342
Csp6I GTAC 2 cut(s) 416, 708
CviAII CATG 1 cut(s) 74
CviQI GTAC 2 cut(s) 416, 708
DdeI CTNAG 3 cut(s) 171, 537, 606
DpnI GATC 2 cut(s) 60, 611
DpnII GATC 2 cut(s) 58, 609
EaeI YGGCCR 2 cut(s) 228, 438
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
EciI GGCGGA 3 cut(s) 231, 584, 666
Eco147I AGGCCT 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 530
EcoRI GAATTC 2 cut(s) 158, 302
EcoT38I GRGCYC 1 cut(s) 207
FaeI CATG 1 cut(s) 77
FaiI YATR 5 cut(s) 75, 83, 327, 591, 627
FatI CATG 1 cut(s) 73
FblI GTMKAC 1 cut(s) 590
FokI GGATG 2 cut(s) 494, 545
FriOI GRGCYC 1 cut(s) 207
GlaI GCGC 1 cut(s) 692
HaeIII GGCC 3 cut(s) 230, 367, 440
HapII CCGG 2 cut(s) 231, 544
HhaI GCGC 1 cut(s) 693
Hin1II CATG 1 cut(s) 77
Hin6I GCGC 1 cut(s) 691
HinP1I GCGC 1 cut(s) 691
HinfI GANTC 3 cut(s) 291, 358, 638
HpaII CCGG 2 cut(s) 231, 544
Hpy166II GTNNAC 2 cut(s) 447, 591
Hpy188I TCNGA 4 cut(s) 90, 332, 363, 471
Hpy188III TCNNGA 3 cut(s) 74, 112, 613
Hpy8I GTNNAC 2 cut(s) 447, 591
Hpy99I CGWCG 1 cut(s) 471
HpyAV CCTTC 5 cut(s) 46, 146, 256, 258, 497
HpyCH4III ACNGT 2 cut(s) 212, 436
HpyCH4IV ACGT 2 cut(s) 117, 466
HpyCH4V TGCA 3 cut(s) 259, 347, 686
HpyF3I CTNAG 3 cut(s) 171, 537, 606
HpySE526I ACGT 2 cut(s) 117, 466
Hsp92II CATG 1 cut(s) 77
HspAI GCGC 1 cut(s) 691
KpnI GGTACC 1 cut(s) 711
Kzo9I GATC 2 cut(s) 58, 609
LweI GCATC 2 cut(s) 334, 516
MaeII ACGT 2 cut(s) 117, 466
MaeIII GTNAC 2 cut(s) 513, 554
MalI GATC 2 cut(s) 60, 611
MbiI CCGCTC 1 cut(s) 430
MboI GATC 2 cut(s) 58, 609
MboII GAAGA 2 cut(s) 210, 469
MflI RGATCY 2 cut(s) 58, 609
MhlI GDGCHC 2 cut(s) 193, 207
MluCI AATT 7 cut(s) 27, 158, 302, 336, 391, 410, 577
MmeI TCCRAC 1 cut(s) 449
MroXI GAANNNNTTC 1 cut(s) 476
MseI TTAA 2 cut(s) 96, 374
MslI CAYNNNNRTG 1 cut(s) 686
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 2 cut(s) 231, 544
NdeII GATC 2 cut(s) 58, 609
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 709
NmeAIII GCCGAG 2 cut(s) 410, 466
PagI TCATGA 1 cut(s) 73
PceI AGGCCT 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 3 cut(s) 291, 358, 638
PspN4I GGNNCC 1 cut(s) 709
PspPI GGNCC 1 cut(s) 239
PsuI RGATCY 2 cut(s) 58, 609
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 2 cut(s) 417, 709
RsaNI GTAC 2 cut(s) 416, 708
RseI CAYNNNNRTG 1 cut(s) 686
SaqAI TTAA 2 cut(s) 96, 374
Sau3AI GATC 2 cut(s) 58, 609
Sau96I GGNCC 1 cut(s) 239
SduI GDGCHC 2 cut(s) 193, 207
SetI ASST 8 cut(s) 81, 120, 421, 469, 607, 670, 699, 719
SfaNI GCATC 2 cut(s) 334, 516
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 686
SmlI CTYRAG 2 cut(s) 613, 663
SmoI CTYRAG 2 cut(s) 613, 663
Sse9I AATT 7 cut(s) 27, 158, 302, 336, 391, 410, 577
SseBI AGGCCT 1 cut(s) 367
SsiI CCGC 6 cut(s) 133, 242, 428, 569, 651, 711
StuI AGGCCT 1 cut(s) 367
TaaI ACNGT 2 cut(s) 212, 436
TaiI ACGT 2 cut(s) 120, 469
TaqI TCGA 3 cut(s) 207, 289, 342
TasI AATT 7 cut(s) 27, 158, 302, 336, 391, 410, 577
TfiI GAWTC 3 cut(s) 291, 358, 638
Tru1I TTAA 2 cut(s) 96, 374
Tru9I TTAA 2 cut(s) 96, 374
TscAI CASTG 1 cut(s) 441
TspDTI ATGAA 3 cut(s) 62, 516, 651
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 3 cut(s) 158, 302, 391
XmiI GTMKAC 1 cut(s) 590
XmnI GAANNNNTTC 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.