Rw6G030300

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001867
Physical Location & Seq
Forward (+)
54476982 .. 54478265
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G030300.1

Sequence Viewer

Length: 957 bp
ATGAAATTAACAATGGCTACATCAATGAGTACTAATTCTAATGCCTTTGTTTTTCCTCTTGCTTTCTGTTTAGTTGGGATATCTCAGCTGCTGCTTTGCTCAGGTGATGCTCCCAACTGTGATCCCAATTTGATTGAAGCCAGTGATAGGGACAGGCTCCAATTTGCTTTGAACTTGGAATTCTTGGAGACCGAGTTTTTCTTGTATGCTGCTCTTGGAAAAGGTCTAGATGCTATCAGTCCAAATTTAACCCTAGGCGGCCCCCCTCCGATTGGTGCTCAGAAGGCGAATCTCGAACCTCTTGTTCGTCGTATCATCGAGGAATTCGGTTATCAAGAAGTTGGTCATATCAGATCAATTATTAAAAAAGAAGGAGGGTTTCCCAGGCCTTTGTTAGATGTCAGCCGTCAGAATTTCGCAAAACTAATGGATCGAGCAGTGGGTTTCACTCTGAACCCGCCATTCGATCCATATGCAAACTCACTTAATTATCTCTTGGCAACCTACACCATCCCTTATGTGGGATTAGTAGGTTATGTTGGCACAATTCCATACCTTAAAAATATGACATCTTGCAGATTGGCTGCATCACTTTTGGGGGTTGAGAGTGGACAAGATTCGGTCACACGTACATTTCTCTATCAGAGAGCCTTTGAGAAGGTGCAGCCCTATAACATCACAGTGGCTGATTTTACAAACCGTATTTCTATGCTTAGGAACGATCTTGCAATGTGTGGGATCAAAGATGAAGGCATCATAGTGCCGGAGAAGCTTGGGGCGGAGAATCGGACGTCCAGTAACATCATATCAGCCGATCCTAACTCGCTTTCGTATGCAAGGACACCGCCGGAGATATTGAGGATTGTATATGCAAGTGGCAATGAATCACTGCCGGGCGGATTTTACCCTAAAGGTGCAAATGGGAATATTGCAAGGCGCTTCTTGAAGATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

318

Amino Acids

34.88

Weight (kDa)

7.55

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 48 - 215 4.3e-31 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 794
AciI CCGC 5 cut(s) 258, 458, 779, 845, 897
AclWI GGATC 5 cut(s) 116, 438, 461, 746, 809
AcsI RAATTY 4 cut(s) 179, 244, 323, 412
AcyI GRCGYC 1 cut(s) 791
AfaI GTAC 2 cut(s) 31, 631
AfiI CCNNNNNNNGG 4 cut(s) 147, 272, 520, 521
AflIII ACRYGT 1 cut(s) 626
AgsI TTSAA 3 cut(s) 137, 172, 946
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 2 cut(s) 88, 772
AluI AGCT 2 cut(s) 88, 772
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 5 cut(s) 116, 438, 461, 746, 809
AlwNI CAGNNNCTG 2 cut(s) 91, 686
AoxI GGCC 2 cut(s) 259, 386
ApeKI GCWGC 5 cut(s) 88, 91, 209, 584, 664
ApoI RAATTY 4 cut(s) 179, 244, 323, 412
AseI ATTAAT 1 cut(s) 951
AspA2I CCTAGG 1 cut(s) 253
AspLEI GCGC 1 cut(s) 939
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 894
AsuHPI GGTGA 1 cut(s) 116
AvrII CCTAGG 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 5 cut(s) 75, 78, 196, 571, 676
BccI CCATC 1 cut(s) 518
BceAI ACGGC 1 cut(s) 390
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BciT130I CCWGG 1 cut(s) 385
BcnI CCSGG 1 cut(s) 894
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 2 cut(s) 227, 254
BfoI RGCGCY 1 cut(s) 940
BisI GCNGC 6 cut(s) 89, 92, 210, 259, 585, 665
BlnI CCTAGG 1 cut(s) 253
BlsI GCNGC 6 cut(s) 90, 93, 211, 260, 586, 666
BmcAI AGTACT 1 cut(s) 31
Bme1390I CCNGG 2 cut(s) 385, 894
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 158, 262
BmrFI CCNGG 2 cut(s) 385, 894
BmsI GCATC 4 cut(s) 97, 220, 596, 762
Bpu10I CCTNAGC 2 cut(s) 100, 713
BpuMI CCSGG 1 cut(s) 894
BsaAI YACGTR 1 cut(s) 629
BsaHI GRCGYC 1 cut(s) 791
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 253, 383
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 4 cut(s) 147, 272, 520, 521
Bse1I ACTGG 2 cut(s) 141, 795
Bse3DI GCAATG 2 cut(s) 735, 886
BseBI CCWGG 1 cut(s) 385
BseDI CCNNGG 2 cut(s) 253, 383
BseGI GGATG 1 cut(s) 510
BseLI CCNNNNNNNGG 4 cut(s) 147, 272, 520, 521
BseMI GCAATG 2 cut(s) 735, 886
BseMII CTCAG 3 cut(s) 98, 114, 293
BseNI ACTGG 2 cut(s) 141, 795
BseXI GCAGC 5 cut(s) 75, 78, 196, 571, 676
BsgI GTGCAG 1 cut(s) 683
BshFI GGCC 2 cut(s) 261, 388
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 3 cut(s) 764, 848, 893
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 4 cut(s) 147, 272, 520, 521
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 2 cut(s) 261, 388
Bso31I GGTCTC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 7 cut(s) 121, 353, 430, 466, 721, 738, 814
BspACI CCGC 5 cut(s) 258, 458, 779, 845, 897
BspANI GGCC 2 cut(s) 261, 388
BspCNI CTCAG 3 cut(s) 97, 113, 292
BspLI GGNNCC 2 cut(s) 158, 262
BspPI GGATC 5 cut(s) 116, 438, 461, 746, 809
BspTNI GGTCTC 1 cut(s) 182
BsrDI GCAATG 2 cut(s) 735, 886
BsrI ACTGG 2 cut(s) 141, 795
BssECI CCNNGG 2 cut(s) 253, 383
BssMI GATC 7 cut(s) 121, 353, 430, 466, 721, 738, 814
BssNI GRCGYC 1 cut(s) 791
BssT1I CCWWGG 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 3 cut(s) 119, 682, 701
BstACI GRCGYC 1 cut(s) 791
BstBAI YACGTR 1 cut(s) 629
BstDEI CTNAG 4 cut(s) 84, 100, 279, 713
BstF5I GGATG 1 cut(s) 510
BstH2I RGCGCY 1 cut(s) 940
BstHHI GCGC 1 cut(s) 939
BstKTI GATC 7 cut(s) 124, 356, 433, 469, 724, 741, 817
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 7 cut(s) 121, 353, 430, 466, 721, 738, 814
BstMWI GCNNNNNNNGC 2 cut(s) 284, 769
BstNI CCWGG 1 cut(s) 385
BstSCI CCNGG 2 cut(s) 383, 892
BstV1I GCAGC 5 cut(s) 75, 78, 196, 571, 676
BsuRI GGCC 2 cut(s) 261, 388
BtsCI GGATG 1 cut(s) 510
BtsI GCAGTG 2 cut(s) 444, 887
BtsIMutI CAGTG 4 cut(s) 148, 444, 687, 887
CaiI CAGNNNCTG 2 cut(s) 91, 686
CfoI GCGC 1 cut(s) 939
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 2 cut(s) 30, 630
CviQI GTAC 2 cut(s) 30, 630
DdeI CTNAG 4 cut(s) 84, 100, 279, 713
DpnI GATC 7 cut(s) 123, 355, 432, 468, 723, 740, 816
DpnII GATC 7 cut(s) 121, 353, 430, 466, 721, 738, 814
EciI GGCGGA 2 cut(s) 794, 912
Eco130I CCWWGG 1 cut(s) 253
Eco147I AGGCCT 1 cut(s) 388
Eco31I GGTCTC 1 cut(s) 182
Eco32I GATATC 1 cut(s) 81
EcoRI GAATTC 2 cut(s) 179, 323
EcoRII CCWGG 1 cut(s) 383
EcoRV GATATC 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 253
FaqI GGGAC 1 cut(s) 164
FauI CCCGC 1 cut(s) 465
FauNDI CATATG 1 cut(s) 472
Fnu4HI GCNGC 6 cut(s) 89, 92, 210, 259, 585, 665
FokI GGATG 1 cut(s) 497
Fsp4HI GCNGC 6 cut(s) 89, 92, 210, 259, 585, 665
FspBI CTAG 2 cut(s) 227, 254
GlaI GCGC 1 cut(s) 938
GluI GCNGC 6 cut(s) 89, 92, 210, 259, 585, 665
HaeII RGCGCY 1 cut(s) 940
HaeIII GGCC 2 cut(s) 261, 388
HapII CCGG 3 cut(s) 764, 848, 893
HhaI GCGC 1 cut(s) 939
Hin1I GRCGYC 1 cut(s) 791
Hin6I GCGC 1 cut(s) 937
HinP1I GCGC 1 cut(s) 937
HindIII AAGCTT 1 cut(s) 770
HinfI GANTC 4 cut(s) 289, 617, 784, 884
HpaII CCGG 3 cut(s) 764, 848, 893
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 611
Hpy188I TCNGA 7 cut(s) 270, 282, 353, 411, 453, 645, 789
Hpy188III TCNNGA 4 cut(s) 227, 293, 335, 943
Hpy8I GTNNAC 1 cut(s) 611
Hpy99I CGWCG 1 cut(s) 312
HpyAV CCTTC 4 cut(s) 277, 365, 652, 743
HpyCH4III ACNGT 3 cut(s) 119, 682, 701
HpyCH4IV ACGT 2 cut(s) 628, 791
HpyCH4V TGCA 9 cut(s) 476, 576, 587, 664, 728, 836, 872, 917, 932
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 769
HpyF3I CTNAG 4 cut(s) 84, 100, 279, 713
HpySE526I ACGT 2 cut(s) 628, 791
Hsp92I GRCGYC 1 cut(s) 791
HspAI GCGC 1 cut(s) 937
Kzo9I GATC 7 cut(s) 121, 353, 430, 466, 721, 738, 814
LmnI GCTCC 2 cut(s) 115, 162
LpnPI CCDG 9 cut(s) 87, 139, 154, 370, 397, 777, 808, 861, 906
Lsp1109I GCAGC 5 cut(s) 75, 78, 196, 571, 676
LweI GCATC 4 cut(s) 97, 220, 596, 762
MaeI CTAG 2 cut(s) 227, 254
MaeII ACGT 2 cut(s) 628, 791
MaeIII GTNAC 2 cut(s) 622, 797
MalI GATC 7 cut(s) 123, 355, 432, 468, 723, 740, 816
MboI GATC 7 cut(s) 121, 353, 430, 466, 721, 738, 814
MhlI GDGCHC 1 cut(s) 280
MnlI CCTC 6 cut(s) 66, 276, 309, 313, 368, 852
MseI TTAA 7 cut(s) 8, 248, 363, 486, 558, 951, 955
MslI CAYNNNNRTG 2 cut(s) 680, 758
MspA1I CMGCKG 1 cut(s) 88
MspI CCGG 3 cut(s) 764, 848, 893
MspR9I CCNGG 2 cut(s) 385, 894
MvaI CCWGG 1 cut(s) 385
MwoI GCNNNNNNNGC 2 cut(s) 284, 769
NciI CCSGG 1 cut(s) 894
NdeI CATATG 1 cut(s) 472
NdeII GATC 7 cut(s) 121, 353, 430, 466, 721, 738, 814
NlaIV GGNNCC 2 cut(s) 158, 262
NmuCI GTSAC 1 cut(s) 622
PacI TTAATTAA 1 cut(s) 955
PceI AGGCCT 1 cut(s) 388
PfeI GAWTC 4 cut(s) 289, 617, 784, 884
PkrI GCNGC 6 cut(s) 90, 93, 211, 260, 586, 666
Ppu21I YACGTR 1 cut(s) 629
PshBI ATTAAT 1 cut(s) 951
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
PspN4I GGNNCC 2 cut(s) 158, 262
PspPI GGNCC 1 cut(s) 260
PstNI CAGNNNCTG 2 cut(s) 91, 686
PvuII CAGCTG 1 cut(s) 88
RsaI GTAC 2 cut(s) 31, 631
RsaNI GTAC 2 cut(s) 30, 630
RseI CAYNNNNRTG 2 cut(s) 680, 758
SaqAI TTAA 7 cut(s) 8, 248, 363, 486, 558, 951, 955
SatI GCNGC 6 cut(s) 89, 92, 210, 259, 585, 665
Sau3AI GATC 7 cut(s) 121, 353, 430, 466, 721, 738, 814
Sau96I GGNCC 1 cut(s) 260
ScaI AGTACT 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 385, 894
SduI GDGCHC 1 cut(s) 280
SfaNI GCATC 4 cut(s) 97, 220, 596, 762
SmiMI CAYNNNNRTG 2 cut(s) 680, 758
SseBI AGGCCT 1 cut(s) 388
SsiI CCGC 5 cut(s) 258, 458, 779, 845, 897
SspI AATATT 1 cut(s) 928
SspMI CTAG 2 cut(s) 227, 254
StuI AGGCCT 1 cut(s) 388
StyD4I CCNGG 2 cut(s) 383, 892
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 3 cut(s) 119, 682, 701
TaiI ACGT 2 cut(s) 631, 794
TaqI TCGA 4 cut(s) 294, 318, 433, 465
TaqII GACCGA 2 cut(s) 206, 610
TatI WGTACW 1 cut(s) 29
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 4 cut(s) 289, 617, 784, 884
Tru1I TTAA 7 cut(s) 8, 248, 363, 486, 558, 951, 955
Tru9I TTAA 7 cut(s) 8, 248, 363, 486, 558, 951, 955
TscAI CASTG 4 cut(s) 148, 444, 687, 894
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 5 cut(s) 88, 91, 209, 584, 664
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 3 cut(s) 17, 762, 897
TspRI CASTG 4 cut(s) 148, 444, 687, 894
VspI ATTAAT 1 cut(s) 951
XapI RAATTY 4 cut(s) 179, 244, 323, 412
XbaI TCTAGA 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 517
XmaJI CCTAGG 1 cut(s) 253
XspI CTAG 2 cut(s) 227, 254
ZraI GACGTC 1 cut(s) 792
ZrmI AGTACT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.