Rh6AG348300

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001867
Physical Location & Seq
Forward (+)
54843176 .. 54843773
598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG348300.1

Sequence Viewer

Length: 393 bp
ATGACATCTTGCAGATTGGCTGCATCACTTTTGGGGGTTGAGAGTGGACAAGATTCGGTCACACGTACATTTCTCTATCAGAGAGCCTTTGAGAAGGTGCAGCCCTATAACATCACAGTGGCTGATTTTACAAACCGTATTTCTATGCTTAGGAACGATCTTGCAATGTGTGGGATCAAAGATGAAGGCATCATAGTGCCGGAGAAGCTTGGGGCGGAGAATCGGACGTCCAGTAACATCATATCAGCCGATCCTAACTCGCTTTCGTATGCAAGGACACCGCCGGAGATATTGAGGATTGTATATGCAAGTGGCAATGAATCACTGCCGGGCGGATTTTACCCTAAAGGTGCAAATGGGAATATTGCAAGGCGCTTCTTGAAGATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

130

Amino Acids

14.25

Weight (kDa)

9.03

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 230
AciI CCGC 3 cut(s) 215, 281, 333
AclWI GGATC 2 cut(s) 182, 245
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 1 cut(s) 382
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
AlwI GGATC 2 cut(s) 182, 245
AlwNI CAGNNNCTG 1 cut(s) 122
ApeKI GCWGC 2 cut(s) 20, 100
AseI ATTAAT 1 cut(s) 387
AspLEI GCGC 1 cut(s) 375
AsuC2I CCSGG 1 cut(s) 330
BbvI GCAGC 2 cut(s) 7, 112
BcnI CCSGG 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 376
BisI GCNGC 2 cut(s) 21, 101
BlsI GCNGC 2 cut(s) 22, 102
Bme1390I CCNGG 1 cut(s) 330
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 2 cut(s) 32, 198
Bpu10I CCTNAGC 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 231
Bse3DI GCAATG 2 cut(s) 171, 322
BseMI GCAATG 2 cut(s) 171, 322
BseNI ACTGG 1 cut(s) 231
BseXI GCAGC 2 cut(s) 7, 112
BsgI GTGCAG 1 cut(s) 119
BsiSI CCGG 3 cut(s) 200, 284, 329
Bsp143I GATC 3 cut(s) 157, 174, 250
BspACI CCGC 3 cut(s) 215, 281, 333
BspPI GGATC 2 cut(s) 182, 245
BsrDI GCAATG 2 cut(s) 171, 322
BsrI ACTGG 1 cut(s) 231
BssMI GATC 3 cut(s) 157, 174, 250
BssNI GRCGYC 1 cut(s) 227
Bst4CI ACNGT 2 cut(s) 118, 137
BstACI GRCGYC 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 376
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 3 cut(s) 160, 177, 253
BstMBI GATC 3 cut(s) 157, 174, 250
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 328
BstV1I GCAGC 2 cut(s) 7, 112
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 2 cut(s) 123, 323
CaiI CAGNNNCTG 1 cut(s) 122
CfoI GCGC 1 cut(s) 375
Csp6I GTAC 1 cut(s) 66
CviJI RGCY 6 cut(s) 20, 86, 103, 122, 208, 248
CviKI_1 RGCY 6 cut(s) 20, 86, 103, 122, 208, 248
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 1 cut(s) 149
DpnI GATC 3 cut(s) 159, 176, 252
DpnII GATC 3 cut(s) 157, 174, 250
EciI GGCGGA 2 cut(s) 230, 348
FaiI YATR 7 cut(s) 108, 146, 194, 242, 270, 304, 306
Fnu4HI GCNGC 2 cut(s) 21, 101
Fsp4HI GCNGC 2 cut(s) 21, 101
GlaI GCGC 1 cut(s) 374
GluI GCNGC 2 cut(s) 21, 101
HaeII RGCGCY 1 cut(s) 376
HapII CCGG 3 cut(s) 200, 284, 329
HhaI GCGC 1 cut(s) 375
Hin1I GRCGYC 1 cut(s) 227
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 3 cut(s) 53, 220, 320
HpaII CCGG 3 cut(s) 200, 284, 329
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 2 cut(s) 81, 225
Hpy188III TCNNGA 1 cut(s) 379
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 88, 179
HpyCH4III ACNGT 2 cut(s) 118, 137
HpyCH4IV ACGT 2 cut(s) 64, 227
HpyCH4V TGCA 8 cut(s) 12, 23, 100, 164, 272, 308, 353, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 2 cut(s) 64, 227
Hsp92I GRCGYC 1 cut(s) 227
HspAI GCGC 1 cut(s) 373
Kzo9I GATC 3 cut(s) 157, 174, 250
LpnPI CCDG 4 cut(s) 213, 244, 297, 342
Lsp1109I GCAGC 2 cut(s) 7, 112
LweI GCATC 2 cut(s) 32, 198
MaeII ACGT 2 cut(s) 64, 227
MaeIII GTNAC 2 cut(s) 58, 233
MalI GATC 3 cut(s) 159, 176, 252
MboI GATC 3 cut(s) 157, 174, 250
MluCI AATT 1 cut(s) 388
MnlI CCTC 1 cut(s) 288
MseI TTAA 2 cut(s) 387, 391
MslI CAYNNNNRTG 2 cut(s) 116, 194
MspI CCGG 3 cut(s) 200, 284, 329
MspR9I CCNGG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 205
NciI CCSGG 1 cut(s) 330
NdeII GATC 3 cut(s) 157, 174, 250
NmuCI GTSAC 1 cut(s) 58
PacI TTAATTAA 1 cut(s) 391
PfeI GAWTC 3 cut(s) 53, 220, 320
PkrI GCNGC 2 cut(s) 22, 102
Ppu21I YACGTR 1 cut(s) 65
PshBI ATTAAT 1 cut(s) 387
PstNI CAGNNNCTG 1 cut(s) 122
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
RseI CAYNNNNRTG 2 cut(s) 116, 194
SaqAI TTAA 2 cut(s) 387, 391
SatI GCNGC 2 cut(s) 21, 101
Sau3AI GATC 3 cut(s) 157, 174, 250
ScrFI CCNGG 1 cut(s) 330
SetI ASST 5 cut(s) 67, 99, 210, 230, 352
SfaNI GCATC 2 cut(s) 32, 198
SmiMI CAYNNNNRTG 2 cut(s) 116, 194
Sse9I AATT 1 cut(s) 388
SsiI CCGC 3 cut(s) 215, 281, 333
SspI AATATT 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 328
TaaI ACNGT 2 cut(s) 118, 137
TaiI ACGT 2 cut(s) 67, 230
TaqII GACCGA 1 cut(s) 46
TasI AATT 1 cut(s) 388
TfiI GAWTC 3 cut(s) 53, 220, 320
Tru1I TTAA 2 cut(s) 387, 391
Tru9I TTAA 2 cut(s) 387, 391
TscAI CASTG 2 cut(s) 123, 330
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 2 cut(s) 20, 100
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 2 cut(s) 198, 333
TspRI CASTG 2 cut(s) 123, 330
VspI ATTAAT 1 cut(s) 387
ZraI GACGTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.