FvH4_2g21640

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001867
Physical Location & Seq
Reverse (-)
17949720 .. 17951262
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21640.t1

Sequence Viewer

Length: 957 bp
ATGTCTCGTTCAGTTTCTCATTTCATGACCACTGCCTCCCTTTTTCTTCATGCATTGATTCTCAGCCTCACTATTCACCGGGCTATAAGTGTCACTGATGCTCCCAAGTACTGCGAACCCATTACAGCGAATGATGCTGATAGCGTTCAATTTGCTTTGAACGCGGAGTACTTGGAGGCTGAGTTTTTTCTGTTCGCTGCTCTTGGCAGAGGACTCGACAGCACCAATCCAGGTTATAGCAAAGGCGGTCCTCCTCCTATTGGTGGTCAGAAGGCCCTTCTTGATGACCCTGTTGTTGCTCCTATCATTGAGGAATTCGCTTATCAAGAAGTTGGCCATATCAGAGCGATCACTAGAACATTTGGAGGATATCCGAGGCCTCTCTTAGACATCAGCCGTGAGAATTTCGCAAGATTTTTCAATAAGATAGCGGGTTACTCCCTCATCCCTCCATTTAACCCCTATGCAAACTCCATCAATTTTCTGCTAGCAACCTATTTTATCCCTTATCTGGGACTGAATGGCTATGTCGGCACCCTTCCACGCCTCATCGACCCTAATTCGCGCAGGTTGGTTGCAGAACTAATGGCAATTGAAGGTGGACAAGATGCAGTGGTACGTACGTTACTGTACAAGAAAGCAAATGAGACGGTGGTTCCGTACAAATTTACGGTGGCTGAATTCACAAACCTCATCTCTGCACGTCGGAACTTCCTCGGTGGGTGTGGTAACAAAGATGAAGGCATCATACTGCCTAACCAGAAGCTCGGGGCAGAAAACCAGACAACAAGCAACGTTCTATCCGCTGATGCGAATTCGCTTGCCTATGCGAGAACCCCGGCTGAGATCTTGAGGAATCTCTATGGAAGTGGCAGTGAATCTAAACCTGGCGGGTTTTTCCCTAAAGGAGCTAATGGAGCTATTGCAAGGCGCTACCTTACCGGCTACGATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

319

Amino Acids

34.68

Weight (kDa)

7.72

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 44 - 212 3e-28 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 558
AccB1I GGYRCC 1 cut(s) 533
AccII CGCG 2 cut(s) 164, 565
AciI CCGC 5 cut(s) 164, 246, 431, 804, 891
AclI AACGTT 1 cut(s) 795
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 5 cut(s) 314, 403, 665, 680, 814
AfaI GTAC 6 cut(s) 110, 170, 618, 622, 632, 662
AfiI CCNNNNNNNGG 4 cut(s) 260, 263, 511, 512
AgsI TTSAA 4 cut(s) 149, 160, 421, 596
AjiI CACGTC 1 cut(s) 704
AjnI CCWGG 2 cut(s) 229, 886
AluBI AGCT 3 cut(s) 766, 911, 920
AluI AGCT 3 cut(s) 766, 911, 920
Alw26I GTCTC 2 cut(s) 9, 641
Ama87I CYCGRG 1 cut(s) 767
AoxI GGCC 3 cut(s) 273, 334, 377
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 5 cut(s) 314, 403, 665, 680, 814
AspLEI GCGC 2 cut(s) 567, 933
AspS9I GGNCC 2 cut(s) 248, 274
AsuC2I CCSGG 2 cut(s) 80, 839
AsuHPI GGTGA 1 cut(s) 68
AsuNHI GCTAGC 1 cut(s) 487
AvaI CYCGRG 1 cut(s) 767
AvaII GGWCC 1 cut(s) 248
BaeI ACNNNNGTAYC 2 cut(s) 608, 641
BalI TGGCCA 1 cut(s) 336
BanI GGYRCC 1 cut(s) 533
BarI GAAGNNNNNNTAC 2 cut(s) 732, 764
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 482
BceAI ACGGC 1 cut(s) 381
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 2 cut(s) 231, 888
BcnI CCSGG 2 cut(s) 80, 839
BcoDI GTCTC 2 cut(s) 9, 641
BfaI CTAG 2 cut(s) 354, 488
BfoI RGCGCY 1 cut(s) 934
BfuAI ACCTGC 1 cut(s) 558
BglII AGATCT 1 cut(s) 846
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmcAI AGTACT 2 cut(s) 110, 170
Bme1390I CCNGG 4 cut(s) 80, 231, 839, 888
Bme18I GGWCC 1 cut(s) 248
BmeT110I CYCGRG 1 cut(s) 767
BmgBI CACGTC 1 cut(s) 704
BmgT120I GGNCC 2 cut(s) 248, 274
BmiI GGNNCC 2 cut(s) 535, 657
BmrFI CCNGG 4 cut(s) 80, 231, 839, 888
BmsI GCATC 5 cut(s) 88, 124, 598, 753, 799
BmtI GCTAGC 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 871
BpuMI CCSGG 2 cut(s) 80, 839
BsaAI YACGTR 1 cut(s) 620
BsaJI CCNNGG 3 cut(s) 374, 715, 837
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 167, 197
Bsc4I CCNNNNNNNGG 4 cut(s) 260, 263, 511, 512
Bse118I RCCGGY 1 cut(s) 941
BseBI CCWGG 2 cut(s) 231, 888
BseDI CCNNGG 3 cut(s) 374, 715, 837
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 4 cut(s) 260, 263, 511, 512
BseMII CTCAG 3 cut(s) 76, 171, 834
BseRI GAGGAG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 2 cut(s) 164, 565
BshFI GGCC 3 cut(s) 275, 336, 379
BshNI GGYRCC 1 cut(s) 533
BsiHKCI CYCGRG 1 cut(s) 767
BsiSI CCGG 3 cut(s) 79, 839, 942
BsiWI CGTACG 1 cut(s) 620
BslFI GGGAC 1 cut(s) 528
BslI CCNNNNNNNGG 4 cut(s) 260, 263, 511, 512
BsmAI GTCTC 2 cut(s) 9, 641
BsmBI CGTCTC 1 cut(s) 641
BsmFI GGGAC 1 cut(s) 528
BsnI GGCC 3 cut(s) 275, 336, 379
BsoBI CYCGRG 1 cut(s) 767
Bsp1407I TGTACA 1 cut(s) 630
Bsp143I GATC 2 cut(s) 348, 846
BspACI CCGC 5 cut(s) 164, 246, 431, 804, 891
BspANI GGCC 3 cut(s) 275, 336, 379
BspCNI CTCAG 3 cut(s) 75, 172, 835
BspFNI CGCG 2 cut(s) 164, 565
BspHI TCATGA 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 535, 657
BspMI ACCTGC 1 cut(s) 558
BspOI GCTAGC 1 cut(s) 491
BspT107I GGYRCC 1 cut(s) 533
BsrFI RCCGGY 1 cut(s) 941
BsrGI TGTACA 1 cut(s) 630
BssAI RCCGGY 1 cut(s) 941
BssECI CCNNGG 3 cut(s) 374, 715, 837
BssMI GATC 2 cut(s) 348, 846
Bst2UI CCWGG 2 cut(s) 231, 888
Bst4CI ACNGT 3 cut(s) 630, 652, 673
BstAUI TGTACA 1 cut(s) 630
BstBAI YACGTR 1 cut(s) 620
BstC8I GCNNGC 2 cut(s) 489, 822
BstDEI CTNAG 4 cut(s) 62, 180, 385, 843
BstF5I GGATG 1 cut(s) 444
BstFNI CGCG 2 cut(s) 164, 565
BstH2I RGCGCY 1 cut(s) 934
BstHHI GCGC 2 cut(s) 567, 933
BstKTI GATC 2 cut(s) 351, 849
BstMAI GTCTC 2 cut(s) 9, 641
BstMBI GATC 2 cut(s) 348, 846
BstMWI GCNNNNNNNGC 4 cut(s) 134, 161, 531, 917
BstNI CCWGG 2 cut(s) 231, 888
BstSCI CCNGG 4 cut(s) 78, 229, 837, 886
BstSNI TACGTA 1 cut(s) 620
BstUI CGCG 2 cut(s) 164, 565
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 846
BstYI RGATCY 1 cut(s) 846
BsuRI GGCC 3 cut(s) 275, 336, 379
BtrI CACGTC 1 cut(s) 704
BtsCI GGATG 1 cut(s) 444
BtsI GCAGTG 3 cut(s) 30, 618, 880
BtsIMutI CAGTG 4 cut(s) 30, 93, 618, 880
BveI ACCTGC 1 cut(s) 558
Cac8I GCNNGC 2 cut(s) 489, 822
CciI TCATGA 1 cut(s) 24
CfoI GCGC 2 cut(s) 567, 933
Cfr10I RCCGGY 1 cut(s) 941
Cfr13I GGNCC 2 cut(s) 248, 274
Csp6I GTAC 6 cut(s) 109, 169, 617, 621, 631, 661
CviAII CATG 2 cut(s) 25, 50
CviQI GTAC 6 cut(s) 109, 169, 617, 621, 631, 661
DdeI CTNAG 4 cut(s) 62, 180, 385, 843
DpnI GATC 2 cut(s) 350, 848
DpnII GATC 2 cut(s) 348, 846
EaeI YGGCCR 1 cut(s) 334
Eco105I TACGTA 1 cut(s) 620
Eco147I AGGCCT 1 cut(s) 379
Eco32I GATATC 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 767
EcoO109I RGGNCCY 1 cut(s) 274
EcoRI GAATTC 3 cut(s) 314, 680, 814
EcoRII CCWGG 2 cut(s) 229, 886
EcoRV GATATC 1 cut(s) 371
EcoT22I ATGCAT 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 641
FaeI CATG 2 cut(s) 28, 53
FaqI GGGAC 1 cut(s) 528
FatI CATG 2 cut(s) 24, 49
FauI CCCGC 2 cut(s) 424, 884
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 2 cut(s) 354, 488
GlaI GCGC 2 cut(s) 566, 932
GluI GCNGC 1 cut(s) 198
HaeII RGCGCY 1 cut(s) 934
HaeIII GGCC 3 cut(s) 275, 336, 379
HapII CCGG 3 cut(s) 79, 839, 942
HhaI GCGC 2 cut(s) 567, 933
Hin1II CATG 2 cut(s) 28, 53
Hin6I GCGC 2 cut(s) 565, 931
HinP1I GCGC 2 cut(s) 565, 931
HinfI GANTC 4 cut(s) 58, 213, 856, 878
HpaII CCGG 3 cut(s) 79, 839, 942
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 602
Hpy188I TCNGA 4 cut(s) 270, 344, 375, 708
Hpy188III TCNNGA 4 cut(s) 25, 281, 326, 850
Hpy8I GTNNAC 1 cut(s) 602
Hpy99I CGWCG 1 cut(s) 708
HpyAV CCTTC 5 cut(s) 265, 287, 548, 590, 734
HpyCH4III ACNGT 3 cut(s) 630, 652, 673
HpyCH4IV ACGT 4 cut(s) 619, 623, 703, 795
HpyCH4V TGCA 6 cut(s) 53, 467, 578, 611, 701, 926
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 161, 531, 917
HpyF3I CTNAG 4 cut(s) 62, 180, 385, 843
HpySE526I ACGT 4 cut(s) 619, 623, 703, 795
Hsp92II CATG 2 cut(s) 28, 53
HspAI GCGC 2 cut(s) 565, 931
Kzo9I GATC 2 cut(s) 348, 846
LmnI GCTCC 4 cut(s) 106, 304, 908, 917
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 5 cut(s) 88, 124, 598, 753, 799
MaeI CTAG 2 cut(s) 354, 488
MaeII ACGT 4 cut(s) 619, 623, 703, 795
MaeIII GTNAC 4 cut(s) 91, 434, 624, 728
MalI GATC 2 cut(s) 350, 848
MboI GATC 2 cut(s) 348, 846
MboII GAAGA 1 cut(s) 38
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 1 cut(s) 846
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 9 cut(s) 149, 314, 403, 478, 559, 591, 665, 680, 814
MluNI TGGCCA 1 cut(s) 336
MlyI GAGTC 1 cut(s) 207
MmeI TCCRAC 1 cut(s) 686
Mox20I TGGCCA 1 cut(s) 336
Mph1103I ATGCAT 1 cut(s) 55
MscI TGGCCA 1 cut(s) 336
MseI TTAA 1 cut(s) 456
Msp20I TGGCCA 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 806
MspI CCGG 3 cut(s) 79, 839, 942
MspR9I CCNGG 4 cut(s) 80, 231, 839, 888
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 2 cut(s) 231, 888
MvnI CGCG 2 cut(s) 164, 565
MwoI GCNNNNNNNGC 4 cut(s) 134, 161, 531, 917
NciI CCSGG 2 cut(s) 80, 839
NdeII GATC 2 cut(s) 348, 846
NheI GCTAGC 1 cut(s) 487
NlaIII CATG 2 cut(s) 28, 53
NlaIV GGNNCC 2 cut(s) 535, 657
NmuCI GTSAC 1 cut(s) 91
NsiI ATGCAT 1 cut(s) 55
PagI TCATGA 1 cut(s) 24
PceI AGGCCT 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 656
PfeI GAWTC 3 cut(s) 58, 856, 878
Pfl23II CGTACG 1 cut(s) 620
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
Ppu21I YACGTR 1 cut(s) 620
Psp1406I AACGTT 1 cut(s) 795
Psp6I CCWGG 2 cut(s) 229, 886
PspGI CCWGG 2 cut(s) 229, 886
PspLI CGTACG 1 cut(s) 620
PspN4I GGNNCC 2 cut(s) 535, 657
PspPI GGNCC 2 cut(s) 248, 274
PsrI GAACNNNNNNTAC 2 cut(s) 152, 184
PsuI RGATCY 1 cut(s) 846
RsaI GTAC 6 cut(s) 110, 170, 618, 622, 632, 662
RsaNI GTAC 6 cut(s) 109, 169, 617, 621, 631, 661
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 2 cut(s) 348, 846
Sau96I GGNCC 2 cut(s) 248, 274
ScaI AGTACT 2 cut(s) 110, 170
SchI GAGTC 1 cut(s) 207
ScrFI CCNGG 4 cut(s) 80, 231, 839, 888
SfaNI GCATC 5 cut(s) 88, 124, 598, 753, 799
SinI GGWCC 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 850
SmoI CTYRAG 1 cut(s) 850
SnaBI TACGTA 1 cut(s) 620
Sse9I AATT 9 cut(s) 149, 314, 403, 478, 559, 591, 665, 680, 814
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 5 cut(s) 164, 246, 431, 804, 891
SspMI CTAG 2 cut(s) 354, 488
StuI AGGCCT 1 cut(s) 379
StyD4I CCNGG 4 cut(s) 78, 229, 837, 886
TaaI ACNGT 3 cut(s) 630, 652, 673
TaiI ACGT 4 cut(s) 622, 626, 706, 798
TaqI TCGA 2 cut(s) 216, 552
TasI AATT 9 cut(s) 149, 314, 403, 478, 559, 591, 665, 680, 814
TatI WGTACW 3 cut(s) 108, 168, 630
TfiI GAWTC 3 cut(s) 58, 856, 878
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 4 cut(s) 37, 100, 618, 880
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 3 cut(s) 13, 38, 753
TspGWI ACGGA 1 cut(s) 648
TspRI CASTG 4 cut(s) 37, 100, 618, 880
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 5 cut(s) 314, 403, 665, 680, 814
XspI CTAG 2 cut(s) 354, 488
ZrmI AGTACT 2 cut(s) 110, 170
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.