Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002560.1

Orthogroup ID

OG0001867

Physical Location & Seq

Genomic Coordinates Forward (+)

77 .. 1361

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002560.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atggcacgttcaatttctcatttcaagaacactgcctccctttttcttcttgcattgaatctcagcctcactattcaccaggtcctgggtgccactgataacagtactctcaagtactgcggacccattacagccactgatgctgatcaaattcaatttgctttgaacttggagttcttggagactgagttttttctgtacggtgctcttggcaaaggcctcgacagcatcaatcctgcttatagccaaggcggtcctcctcctattggtggtcagaaggcccttcttgaagaccctgttgtcgctcgtatcattgaggaatttgcttatgaagaagttggccatatcagagcgattactagcacagtaggaggatttccaaggcctctcttaaacatcagccctgagcaatttgcaagaagtttcgacgatgtagtgggttaccgcctcattcctccatttgaaccctatgcaaactctctcaattttctgctagcagcctatatcatcccgtatgtgggactaaatggctatgtcagcacccttccaagccttaacagcactatttctcgcagcttggttgcaaaactcttggcaattgaaagtggacaagatgcagtgatacgtacgttactgtatgagagagcaaacgagagggtggttccgtacaaattcacggtggctgaattaaccaaccttatctctgcaagacggaactccctcggtgggtgtggcaacaaagatgaaggcatcatactgcctgacaagacgctcggggcagaaaatcagacaaccagcaatgttctatccgctgatgcaaattcgcttgcctacgcgagaaccccgcctgagatcttgaggattgtatatggaagtttcaatgaatctgtgcctggcgggtttttccctaaaggagctaatggggttattgcaaagagctaccttaccaggatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

318

Amino Acids

34.38

Weight (kDa)

5.52

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62730 AT3G62730
fragaria_vesca	FvH4_2g21640 FvH4_2g25280 FvH4_2g25280 FvH4_2g25300 FvH4_2g25320
malus_domestica	MD03G1284600.v1.1 MD11G1014700.v1.1
prunus_persica	Prupe.8G257600_v2.0.a1 Prupe.8G257700_v2.0.a1
pyrus_communis	pycom03g22540 pycom03g22550
rosa_chinensis	RchiOBHm_Chr6g0252921 RchiOBHm_Chr6g0293411 RchiOBHm_Chr6g0293441
rosa_laevigata	RLG00000011946 RLG00000011948 RLG00000015048 RLG00000032763
rosa_multiflora	Rmu_sc0002560.1_g000001 Rmu_sc0006269.1_g000018 Rmu_sc0006269.1_g000021 Rmu_sc0016103.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174150 Rroxscaffold_7G00174170 Rroxscaffold_7G00212280 Rroxscaffold_7G00212290
rosa_rugosa	Rorug05G0541500 Rorug06G0235500 Rorug06G0235700
rosa_samantha	Rh6AG055800 Rh6AG348200 Rh6AG348300 Rh6AG348400 Rh6BG050100 Rh6BG355900 Rh6BG356000 Rh6CG048500 Rh6CG362200 Rh6DG044100 Rh6DG349100 Rh6DG349600
rosa_wichuraiana	Rw6G005050 Rw6G030300 Rw6G030310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccII	CGCG	1 cut(s)	836
AciI	CCGC	6 cut(s)	120, 252, 445, 810, 845, 897
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	4 cut(s)	150, 320, 671, 820
AfaI	GTAC	5 cut(s)	106, 116, 200, 628, 668
AfiI	CCNNNNNNNGG	6 cut(s)	85, 266, 269, 517, 518, 726
AgsI	TTSAA	9 cut(s)	12, 25, 58, 155, 166, 290, 464, 602, 880
AjnI	CCWGG	4 cut(s)	78, 84, 892, 947
AloI	GAACNNNNNNTCC	2 cut(s)	20, 52
AluBI	AGCT	3 cut(s)	576, 917, 939
AluI	AGCT	3 cut(s)	576, 917, 939
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	176
AlwNI	CAGNNNCTG	2 cut(s)	85, 137
Ama87I	CYCGRG	1 cut(s)	773
AoxI	GGCC	4 cut(s)	217, 279, 340, 383
ApeKI	GCWGC	2 cut(s)	497, 573
ApoI	RAATTY	4 cut(s)	150, 320, 671, 820
AspS9I	GGNCC	4 cut(s)	82, 122, 254, 280
AsuHPI	GGTGA	1 cut(s)	68
AsuNHI	GCTAGC	1 cut(s)	493
AvaI	CYCGRG	1 cut(s)	773
AvaII	GGWCC	3 cut(s)	82, 122, 254
BaeI	ACNNNNGTAYC	2 cut(s)	614, 647
BalI	TGGCCA	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	89
BarI	GAAGNNNNNNTAC	2 cut(s)	738, 770
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	509, 585
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	4 cut(s)	80, 86, 894, 949
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	2 cut(s)	360, 494
BglII	AGATCT	1 cut(s)	852
BisI	GCNGC	2 cut(s)	498, 574
BlsI	GCNGC	2 cut(s)	499, 575
BmcAI	AGTACT	2 cut(s)	106, 116
Bme1390I	CCNGG	4 cut(s)	80, 86, 894, 949
Bme18I	GGWCC	3 cut(s)	82, 122, 254
BmeT110I	CYCGRG	1 cut(s)	773
BmgT120I	GGNCC	4 cut(s)	82, 122, 254, 280
BmiI	GGNNCC	3 cut(s)	91, 124, 663
BmrFI	CCNGG	4 cut(s)	80, 86, 894, 949
BmsI	GCATC	5 cut(s)	130, 237, 604, 759, 805
BmtI	GCTAGC	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	2 cut(s)	95, 877
BsaAI	YACGTR	1 cut(s)	626
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	4 cut(s)	85, 247, 380, 721
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 173, 203
Bsc4I	CCNNNNNNNGG	6 cut(s)	85, 266, 269, 517, 518, 726
Bse3DI	GCAATG	1 cut(s)	805
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	4 cut(s)	80, 86, 894, 949
BseDI	CCNNGG	4 cut(s)	85, 247, 380, 721
BseGI	GGATG	1 cut(s)	507
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	6 cut(s)	85, 266, 269, 517, 518, 726
BseMI	GCAATG	1 cut(s)	805
BseMII	CTCAG	4 cut(s)	76, 177, 396, 840
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	509, 585
Bsh1236I	CGCG	1 cut(s)	836
BshFI	GGCC	4 cut(s)	219, 281, 342, 385
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	773
BsiWI	CGTACG	1 cut(s)	626
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	6 cut(s)	85, 266, 269, 517, 518, 726
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	534
BsnI	GGCC	4 cut(s)	219, 281, 342, 385
BsoBI	CYCGRG	1 cut(s)	773
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	145, 852, 951
BspACI	CCGC	6 cut(s)	120, 252, 445, 810, 845, 897
BspANI	GGCC	4 cut(s)	219, 281, 342, 385
BspCNI	CTCAG	4 cut(s)	75, 178, 397, 841
BspFNI	CGCG	1 cut(s)	836
BspLI	GGNNCC	3 cut(s)	91, 124, 663
BspOI	GCTAGC	1 cut(s)	497
BspT107I	GGYRCC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	805
BssECI	CCNNGG	4 cut(s)	85, 247, 380, 721
BssMI	GATC	3 cut(s)	145, 852, 951
BssT1I	CCWWGG	2 cut(s)	247, 380
Bst2UI	CCWGG	4 cut(s)	80, 86, 894, 949
Bst4CI	ACNGT	5 cut(s)	104, 203, 367, 636, 679
BstBAI	YACGTR	1 cut(s)	626
BstC8I	GCNNGC	2 cut(s)	495, 828
BstDEI	CTNAG	4 cut(s)	62, 186, 405, 849
BstEII	GGTNACC	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	507
BstFNI	CGCG	1 cut(s)	836
BstKTI	GATC	3 cut(s)	148, 855, 954
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	145, 852, 951
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 225, 537, 558
BstNI	CCWGG	4 cut(s)	80, 86, 894, 949
BstPI	GGTNACC	1 cut(s)	440
BstSCI	CCNGG	4 cut(s)	78, 84, 892, 947
BstSNI	TACGTA	1 cut(s)	626
BstUI	CGCG	1 cut(s)	836
BstV1I	GCAGC	2 cut(s)	509, 585
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	2 cut(s)	852, 951
BstYI	RGATCY	2 cut(s)	852, 951
BsuRI	GGCC	4 cut(s)	219, 281, 342, 385
BtsCI	GGATG	1 cut(s)	507
BtsI	GCAGTG	2 cut(s)	30, 624
BtsIMutI	CAGTG	4 cut(s)	30, 93, 135, 624
Cac8I	GCNNGC	2 cut(s)	495, 828
CaiI	CAGNNNCTG	2 cut(s)	85, 137
Cfr13I	GGNCC	4 cut(s)	82, 122, 254, 280
CseI	GACGC	1 cut(s)	778
CsiI	ACCWGGT	1 cut(s)	78
Csp6I	GTAC	5 cut(s)	105, 115, 199, 627, 667
CviQI	GTAC	5 cut(s)	105, 115, 199, 627, 667
DdeI	CTNAG	4 cut(s)	62, 186, 405, 849
DpnI	GATC	3 cut(s)	147, 854, 953
DpnII	GATC	3 cut(s)	145, 852, 951
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	340
Eco105I	TACGTA	1 cut(s)	626
Eco130I	CCWWGG	2 cut(s)	247, 380
Eco147I	AGGCCT	2 cut(s)	219, 385
Eco47I	GGWCC	3 cut(s)	82, 122, 254
Eco88I	CYCGRG	1 cut(s)	773
Eco91I	GGTNACC	1 cut(s)	440
EcoO109I	RGGNCCY	2 cut(s)	82, 280
EcoO65I	GGTNACC	1 cut(s)	440
EcoRII	CCWGG	4 cut(s)	78, 84, 892, 947
EcoT14I	CCWWGG	2 cut(s)	247, 380
ErhI	CCWWGG	2 cut(s)	247, 380
FaqI	GGGAC	1 cut(s)	534
FauI	CCCGC	2 cut(s)	852, 890
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	498, 574
FokI	GGATG	1 cut(s)	494
Fsp4HI	GCNGC	2 cut(s)	498, 574
FspBI	CTAG	2 cut(s)	360, 494
GluI	GCNGC	2 cut(s)	498, 574
HaeIII	GGCC	4 cut(s)	219, 281, 342, 385
HgaI	GACGC	1 cut(s)	778
HinfI	GANTC	2 cut(s)	58, 884
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	608
Hpy188I	TCNGA	3 cut(s)	276, 350, 789
Hpy188III	TCNNGA	3 cut(s)	25, 287, 856
Hpy8I	GTNNAC	1 cut(s)	608
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	4 cut(s)	271, 293, 554, 740
HpyCH4III	ACNGT	5 cut(s)	104, 203, 367, 636, 679
HpyCH4IV	ACGT	3 cut(s)	7, 625, 629
HpyCH4V	TGCA	8 cut(s)	53, 416, 473, 584, 617, 707, 818, 932
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 225, 537, 558
HpyF3I	CTNAG	4 cut(s)	62, 186, 405, 849
HpySE526I	ACGT	3 cut(s)	7, 625, 629
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	145, 852, 951
LmnI	GCTCC	1 cut(s)	914
Lsp1109I	GCAGC	2 cut(s)	509, 585
LweI	GCATC	5 cut(s)	130, 237, 604, 759, 805
MabI	ACCWGGT	1 cut(s)	78
MaeI	CTAG	2 cut(s)	360, 494
MaeII	ACGT	3 cut(s)	7, 625, 629
MaeIII	GTNAC	2 cut(s)	440, 630
MalI	GATC	3 cut(s)	147, 854, 953
MboI	GATC	3 cut(s)	145, 852, 951
MboII	GAAGA	3 cut(s)	38, 302, 344
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	2 cut(s)	852, 951
MhlI	GDGCHC	1 cut(s)	208
MlsI	TGGCCA	1 cut(s)	342
MluNI	TGGCCA	1 cut(s)	342
Mox20I	TGGCCA	1 cut(s)	342
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	3 cut(s)	392, 555, 689
Msp20I	TGGCCA	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	812
MspR9I	CCNGG	4 cut(s)	80, 86, 894, 949
MunI	CAATTG	1 cut(s)	597
MvaI	CCWGG	4 cut(s)	80, 86, 894, 949
MvnI	CGCG	1 cut(s)	836
MwoI	GCNNNNNNNGC	4 cut(s)	140, 225, 537, 558
NdeII	GATC	3 cut(s)	145, 852, 951
NheI	GCTAGC	1 cut(s)	493
NlaIV	GGNNCC	3 cut(s)	91, 124, 663
PceI	AGGCCT	2 cut(s)	219, 385
PfeI	GAWTC	2 cut(s)	58, 884
Pfl23II	CGTACG	1 cut(s)	626
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	499, 575
Ppu21I	YACGTR	1 cut(s)	626
PpuMI	RGGWCCY	1 cut(s)	82
Psp5II	RGGWCCY	1 cut(s)	82
Psp6I	CCWGG	4 cut(s)	78, 84, 892, 947
PspEI	GGTNACC	1 cut(s)	440
PspGI	CCWGG	4 cut(s)	78, 84, 892, 947
PspLI	CGTACG	1 cut(s)	626
PspN4I	GGNNCC	3 cut(s)	91, 124, 663
PspPI	GGNCC	4 cut(s)	82, 122, 254, 280
PspPPI	RGGWCCY	1 cut(s)	82
PstNI	CAGNNNCTG	2 cut(s)	85, 137
PsuI	RGATCY	2 cut(s)	852, 951
RsaI	GTAC	5 cut(s)	106, 116, 200, 628, 668
RsaNI	GTAC	5 cut(s)	105, 115, 199, 627, 667
SaqAI	TTAA	3 cut(s)	392, 555, 689
SatI	GCNGC	2 cut(s)	498, 574
Sau3AI	GATC	3 cut(s)	145, 852, 951
Sau96I	GGNCC	4 cut(s)	82, 122, 254, 280
ScaI	AGTACT	2 cut(s)	106, 116
ScrFI	CCNGG	4 cut(s)	80, 86, 894, 949
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	9 cut(s)	10, 84, 578, 628, 632, 699, 919, 941, 945
SexAI	ACCWGGT	1 cut(s)	78
SfaNI	GCATC	5 cut(s)	130, 237, 604, 759, 805
SinI	GGWCC	3 cut(s)	82, 122, 254
SmlI	CTYRAG	2 cut(s)	110, 856
SmoI	CTYRAG	2 cut(s)	110, 856
SnaBI	TACGTA	1 cut(s)	626
SseBI	AGGCCT	2 cut(s)	219, 385
SsiI	CCGC	6 cut(s)	120, 252, 445, 810, 845, 897
SspMI	CTAG	2 cut(s)	360, 494
StuI	AGGCCT	2 cut(s)	219, 385
StyD4I	CCNGG	4 cut(s)	78, 84, 892, 947
StyI	CCWWGG	2 cut(s)	247, 380
TaaI	ACNGT	5 cut(s)	104, 203, 367, 636, 679
TaiI	ACGT	3 cut(s)	10, 628, 632
TaqI	TCGA	2 cut(s)	222, 426
TatI	WGTACW	2 cut(s)	104, 114
TfiI	GAWTC	2 cut(s)	58, 884
Tru1I	TTAA	3 cut(s)	392, 555, 689
Tru9I	TTAA	3 cut(s)	392, 555, 689
TscAI	CASTG	4 cut(s)	37, 100, 142, 624
TseI	GCWGC	2 cut(s)	497, 573
TspDTI	ATGAA	3 cut(s)	345, 759, 897
TspGWI	ACGGA	2 cut(s)	654, 727
TspRI	CASTG	4 cut(s)	37, 100, 142, 624
Van91I	CCANNNNNTGG	1 cut(s)	85
VpaK11BI	GGWCC	3 cut(s)	82, 122, 254
XapI	RAATTY	4 cut(s)	150, 320, 671, 820
XspI	CTAG	2 cut(s)	360, 494
ZrmI	AGTACT	2 cut(s)	106, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.