Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001867

Physical Location & Seq

Genomic Coordinates Forward (+)

58610304 .. 58611160

Gene Structure 857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG355900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAAGCTCACTCACTATGATGGTGGATTTGCTAATTTCAGATCAATTATTAGAAAAGAAGGAGGGTTTCCCAGGCCTTTGTTAGATCTCAGCCGTCAGAATTTCGCAAAATTAATGGATCGAGCAGTGGGTTTCACTCTGAACCCGCCATTCGATCCATATGCAAACTCACTTAATTATCTCTTGGCAACCTACACCATCCCTTATGTGGGATTAGTAGGTTATGTTGGCACAATTCCATACCTTAAAAACATGACATCTTGCAGATTGGCTGCATCACTTTTGGGGGTTGAGAGTGGACAAGATTCGGTCATACGTACATTTCTCTATCAGAGATCCTCTGAGAAGGTGCAGCCCTATAGCCTCACAGTGGCTGATTTTACAAACCGTATTTCTATGCTTAGGAACGATCTTGCAATGTGTGGGATCAAAGATGAAGGCATCATAGTGCCAGAGAAGCTTGGGGCGGAGAATCGGACGTCCAGTAACATCATATCGGCCGATCCTAACTCGCTTTCGTATGCAAGGACACCGCCGGAGATATTGAGGATTGTATATGCAAGTGGCAATGAATCACTGCCGGGCGGATTTTACCCTAAAGGTGCAAATGGGAATATTGCAAGGCGCTTCTTGAAGATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

214

Amino Acids

23.66

Weight (kDa)

9.44

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferritin_2	PF13668	22 - 111	1.7e-15	Ferritin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62730 AT3G62730
fragaria_vesca	FvH4_2g21640 FvH4_2g25280 FvH4_2g25280 FvH4_2g25300 FvH4_2g25320
malus_domestica	MD03G1284600.v1.1 MD11G1014700.v1.1
prunus_persica	Prupe.8G257600_v2.0.a1 Prupe.8G257700_v2.0.a1
pyrus_communis	pycom03g22540 pycom03g22550
rosa_chinensis	RchiOBHm_Chr6g0252921 RchiOBHm_Chr6g0293411 RchiOBHm_Chr6g0293441
rosa_laevigata	RLG00000011946 RLG00000011948 RLG00000015048 RLG00000032763
rosa_multiflora	Rmu_sc0002560.1_g000001 Rmu_sc0006269.1_g000018 Rmu_sc0006269.1_g000021 Rmu_sc0016103.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174150 Rroxscaffold_7G00174170 Rroxscaffold_7G00212280 Rroxscaffold_7G00212290
rosa_rugosa	Rorug05G0541500 Rorug06G0235500 Rorug06G0235700
rosa_samantha	Rh6AG055800 Rh6AG348200 Rh6AG348300 Rh6AG348400 Rh6BG050100 Rh6BG355900 Rh6BG356000 Rh6CG048500 Rh6CG362200 Rh6DG044100 Rh6DG349100 Rh6DG349600
rosa_wichuraiana	Rw6G005050 Rw6G030300 Rw6G030310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	482
AciI	CCGC	4 cut(s)	146, 467, 533, 585
AclWI	GGATC	5 cut(s)	126, 149, 330, 434, 497
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	479
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	3 cut(s)	208, 209, 370
AgsI	TTSAA	1 cut(s)	634
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	2 cut(s)	7, 460
AluI	AGCT	2 cut(s)	7, 460
AlwI	GGATC	5 cut(s)	126, 149, 330, 434, 497
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	74, 498
ApeKI	GCWGC	2 cut(s)	272, 352
ApoI	RAATTY	1 cut(s)	100
AseI	ATTAAT	2 cut(s)	113, 639
AspLEI	GCGC	1 cut(s)	627
AsuC2I	CCSGG	1 cut(s)	582
BbvI	GCAGC	2 cut(s)	259, 364
BccI	CCATC	2 cut(s)	14, 206
BceAI	ACGGC	1 cut(s)	78
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	582
BfmI	CTRYAG	1 cut(s)	358
BfoI	RGCGCY	1 cut(s)	628
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	2 cut(s)	273, 353
BlsI	GCNGC	2 cut(s)	274, 354
Bme1390I	CCNGG	2 cut(s)	73, 582
BmrFI	CCNGG	2 cut(s)	73, 582
BmsI	GCATC	2 cut(s)	284, 450
Bpu10I	CCTNAGC	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	582
BsaAI	YACGTR	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 209, 370
Bse1I	ACTGG	1 cut(s)	483
Bse3DI	GCAATG	2 cut(s)	423, 574
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	3 cut(s)	208, 209, 370
BseMI	GCAATG	2 cut(s)	423, 574
BseMII	CTCAG	2 cut(s)	103, 333
BseNI	ACTGG	1 cut(s)	483
BseX3I	CGGCCG	1 cut(s)	498
BseXI	GCAGC	2 cut(s)	259, 364
BsgI	GTGCAG	1 cut(s)	371
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	2 cut(s)	76, 500
BsiEI	CGRYCG	1 cut(s)	501
BsiSI	CCGG	2 cut(s)	536, 581
BslI	CCNNNNNNNGG	3 cut(s)	208, 209, 370
BsnI	GGCC	2 cut(s)	76, 500
Bsp143I	GATC	8 cut(s)	41, 85, 118, 154, 335, 409, 426, 502
BspACI	CCGC	4 cut(s)	146, 467, 533, 585
BspANI	GGCC	2 cut(s)	76, 500
BspCNI	CTCAG	2 cut(s)	102, 334
BspPI	GGATC	5 cut(s)	126, 149, 330, 434, 497
BsrDI	GCAATG	2 cut(s)	423, 574
BsrI	ACTGG	1 cut(s)	483
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	8 cut(s)	41, 85, 118, 154, 335, 409, 426, 502
BssNI	GRCGYC	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	2 cut(s)	370, 389
BstACI	GRCGYC	1 cut(s)	479
BstBAI	YACGTR	1 cut(s)	317
BstDEI	CTNAG	3 cut(s)	89, 342, 401
BstF5I	GGATG	1 cut(s)	198
BstH2I	RGCGCY	1 cut(s)	628
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	8 cut(s)	44, 88, 121, 157, 338, 412, 429, 505
BstMBI	GATC	8 cut(s)	41, 85, 118, 154, 335, 409, 426, 502
BstMCI	CGRYCG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	71, 580
BstSFI	CTRYAG	1 cut(s)	358
BstSNI	TACGTA	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	259, 364
BstX2I	RGATCY	2 cut(s)	85, 335
BstYI	RGATCY	2 cut(s)	85, 335
BstZI	CGGCCG	1 cut(s)	498
BsuRI	GGCC	2 cut(s)	76, 500
BtsCI	GGATG	1 cut(s)	198
BtsI	GCAGTG	2 cut(s)	132, 575
BtsIMutI	CAGTG	3 cut(s)	132, 375, 575
CaiI	CAGNNNCTG	1 cut(s)	374
CfoI	GCGC	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	9 cut(s)	7, 76, 93, 272, 355, 363, 374, 460, 500
CviKI_1	RGCY	9 cut(s)	7, 76, 93, 272, 355, 363, 374, 460, 500
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	3 cut(s)	89, 342, 401
DpnI	GATC	8 cut(s)	43, 87, 120, 156, 337, 411, 428, 504
DpnII	GATC	8 cut(s)	41, 85, 118, 154, 335, 409, 426, 502
EaeI	YGGCCR	1 cut(s)	498
EagI	CGGCCG	1 cut(s)	498
EciI	GGCGGA	2 cut(s)	482, 600
EclXI	CGGCCG	1 cut(s)	498
Eco105I	TACGTA	1 cut(s)	317
Eco147I	AGGCCT	1 cut(s)	76
Eco52I	CGGCCG	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	71
FaeI	CATG	1 cut(s)	256
FatI	CATG	1 cut(s)	252
FauI	CCCGC	1 cut(s)	153
FauNDI	CATATG	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	273, 353
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	273, 353
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	2 cut(s)	273, 353
HaeII	RGCGCY	1 cut(s)	628
HaeIII	GGCC	2 cut(s)	76, 500
HapII	CCGG	2 cut(s)	536, 581
HhaI	GCGC	1 cut(s)	627
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	3 cut(s)	305, 472, 572
HpaII	CCGG	2 cut(s)	536, 581
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	6 cut(s)	41, 99, 141, 333, 343, 477
Hpy188III	TCNNGA	1 cut(s)	631
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	3 cut(s)	53, 340, 431
HpyCH4III	ACNGT	2 cut(s)	370, 389
HpyCH4IV	ACGT	2 cut(s)	316, 479
HpyCH4V	TGCA	9 cut(s)	164, 264, 275, 352, 416, 524, 560, 605, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpyF3I	CTNAG	3 cut(s)	89, 342, 401
HpySE526I	ACGT	2 cut(s)	316, 479
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	625
Kzo9I	GATC	8 cut(s)	41, 85, 118, 154, 335, 409, 426, 502
LpnPI	CCDG	6 cut(s)	58, 85, 465, 496, 549, 594
Lsp1109I	GCAGC	2 cut(s)	259, 364
LweI	GCATC	2 cut(s)	284, 450
MaeII	ACGT	2 cut(s)	316, 479
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	8 cut(s)	43, 87, 120, 156, 337, 411, 428, 504
MboI	GATC	8 cut(s)	41, 85, 118, 154, 335, 409, 426, 502
MflI	RGATCY	2 cut(s)	85, 335
MluCI	AATT	7 cut(s)	34, 45, 100, 110, 175, 234, 640
MnlI	CCTC	4 cut(s)	56, 349, 374, 540
MseI	TTAA	5 cut(s)	113, 174, 246, 639, 643
MslI	CAYNNNNRTG	2 cut(s)	18, 446
MspI	CCGG	2 cut(s)	536, 581
MspR9I	CCNGG	2 cut(s)	73, 582
MvaI	CCWGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	457
NciI	CCSGG	1 cut(s)	582
NdeI	CATATG	1 cut(s)	160
NdeII	GATC	8 cut(s)	41, 85, 118, 154, 335, 409, 426, 502
NlaIII	CATG	1 cut(s)	256
PacI	TTAATTAA	1 cut(s)	643
PceI	AGGCCT	1 cut(s)	76
PfeI	GAWTC	3 cut(s)	305, 472, 572
PkrI	GCNGC	2 cut(s)	274, 354
Ppu21I	YACGTR	1 cut(s)	317
PshBI	ATTAAT	2 cut(s)	113, 639
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	374
PsuI	RGATCY	2 cut(s)	85, 335
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	2 cut(s)	18, 446
SaqAI	TTAA	5 cut(s)	113, 174, 246, 639, 643
SatI	GCNGC	2 cut(s)	273, 353
Sau3AI	GATC	8 cut(s)	41, 85, 118, 154, 335, 409, 426, 502
ScrFI	CCNGG	2 cut(s)	73, 582
SetI	ASST	9 cut(s)	9, 194, 223, 246, 319, 351, 462, 482, 604
SfaNI	GCATC	2 cut(s)	284, 450
SfcI	CTRYAG	1 cut(s)	358
SmiMI	CAYNNNNRTG	2 cut(s)	18, 446
SnaBI	TACGTA	1 cut(s)	317
Sse9I	AATT	7 cut(s)	34, 45, 100, 110, 175, 234, 640
SseBI	AGGCCT	1 cut(s)	76
SsiI	CCGC	4 cut(s)	146, 467, 533, 585
SspI	AATATT	1 cut(s)	616
StuI	AGGCCT	1 cut(s)	76
StyD4I	CCNGG	2 cut(s)	71, 580
TaaI	ACNGT	2 cut(s)	370, 389
TaiI	ACGT	2 cut(s)	319, 482
TaqI	TCGA	2 cut(s)	121, 153
TaqII	GACCGA	1 cut(s)	298
TasI	AATT	7 cut(s)	34, 45, 100, 110, 175, 234, 640
TfiI	GAWTC	3 cut(s)	305, 472, 572
Tru1I	TTAA	5 cut(s)	113, 174, 246, 639, 643
Tru9I	TTAA	5 cut(s)	113, 174, 246, 639, 643
TscAI	CASTG	3 cut(s)	132, 375, 582
TseI	GCWGC	2 cut(s)	272, 352
TspDTI	ATGAA	3 cut(s)	17, 450, 585
TspRI	CASTG	3 cut(s)	132, 375, 582
VspI	ATTAAT	2 cut(s)	113, 639
XapI	RAATTY	1 cut(s)	100
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
ZraI	GACGTC	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.