RLG00000011948

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001867
Physical Location & Seq
Reverse (-)
13993528 .. 13994786
1259 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011948

Sequence Viewer

Length: 936 bp
ATGAGTACTAATTCTAGTGCCTTTGTTTTTCTTCCTCTAGCTTTCTGTTTAGTTGGGATATCTCAGCTGCTCCTTTGCTCAGGTGATGCTCCCAACTGTGATCCCAATTTGATTGAAGCCAGTGATAGGGGCAGGTTCCAATTTGCTTTGAACTTGGAATTCTTGGAGGCCGAGTTTTTCTTGCATGCTGCTCTTGGCAAAGGTCTAGATGCTATCAGTCCAAATTTAACCCTAGGCGGCCCCCCTCCGATTGGTGCTCAGAAGGCGAATCTCGACCCTCTTGTTCGTCGTATCATCGAGGAATTCGGTTATCAAGAAGTTGGTCATATCAGATCAATTATTAGAAAACAAGGAGGGTTTCCCAGGCCTTTGTTAGATCTCAGCCGTCAGAATTTCGCAAAACTAATGGATCGAGCCGTGGGTTTCACTCTGAACCCGCCATTCGATCCATATGCAAACTCACTTAATTATCTCTTGGCAACCTACACCATCCCTTATGTGGGATTAGTAGGTTATGTTGGCACAATTCCATACCTTAAGAAGATGAAATCTTGCAGATTGGCTGCATCACTTTTGGGGGTTGAGAGTGGACAAGATTCGGTCATACGTACATTTCTCTATCAGAGAGCCTCTGAGAAGGTGCAGCCCTATAGCCTCACAGTGGCTGATTTTACAAACCGTATTTCTATGCTTAGGAACGATCTTGCAATGTGTGGGATCAAAGATGAAGGCATCATAGTGCCGGAGAAGCTTGGGGCAGAGAATCGGACGTCCAGTAACATCATATCAGCCGATCCTAACTCGCTTTCGTATGCAAGGACACCACCGGAGATATTGAGGATTGTATATGCAAGTGGCAATGAATCACTGCCGGGCGGATTTTACCCTAAAGGTGCAAATGGGAATATTGCAAGGCGCTTCTTGAAGATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

312

Amino Acids

34.01

Weight (kDa)

8.74

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 42 - 208 2.8e-31 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 773
Acc36I ACCTGC 1 cut(s) 123
AciI CCGC 3 cut(s) 237, 437, 876
AclWI GGATC 5 cut(s) 95, 417, 440, 725, 788
AcsI RAATTY 4 cut(s) 158, 223, 302, 391
AcyI GRCGYC 1 cut(s) 770
AfaI GTAC 2 cut(s) 7, 610
AfiI CCNNNNNNNGG 5 cut(s) 126, 251, 499, 500, 661
AflII CTTAAG 1 cut(s) 536
AgsI TTSAA 3 cut(s) 116, 151, 925
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 3 cut(s) 41, 67, 751
AluI AGCT 3 cut(s) 41, 67, 751
Alw21I GWGCWC 1 cut(s) 259
AlwI GGATC 5 cut(s) 95, 417, 440, 725, 788
AlwNI CAGNNNCTG 1 cut(s) 665
AoxI GGCC 3 cut(s) 168, 238, 365
ApeKI GCWGC 4 cut(s) 67, 188, 563, 643
ApoI RAATTY 4 cut(s) 158, 223, 302, 391
AseI ATTAAT 1 cut(s) 930
AspA2I CCTAGG 1 cut(s) 232
AspLEI GCGC 1 cut(s) 918
AspS9I GGNCC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 873
AsuHPI GGTGA 1 cut(s) 95
AvrII CCTAGG 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 4 cut(s) 54, 175, 550, 655
BccI CCATC 1 cut(s) 497
BceAI ACGGC 2 cut(s) 369, 401
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BciT130I CCWGG 1 cut(s) 364
BcnI CCSGG 1 cut(s) 873
BfaI CTAG 4 cut(s) 15, 38, 206, 233
BfmI CTRYAG 1 cut(s) 649
BfoI RGCGCY 1 cut(s) 919
BfrI CTTAAG 1 cut(s) 536
BfuAI ACCTGC 1 cut(s) 123
BglII AGATCT 1 cut(s) 376
BisI GCNGC 5 cut(s) 68, 189, 238, 564, 644
BlnI CCTAGG 1 cut(s) 232
BlsI GCNGC 5 cut(s) 69, 190, 239, 565, 645
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 364, 873
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 137, 241
BmrFI CCNGG 2 cut(s) 364, 873
BmsI GCATC 4 cut(s) 76, 199, 575, 741
Bpu10I CCTNAGC 2 cut(s) 79, 692
BpuMI CCSGG 1 cut(s) 873
BsaAI YACGTR 1 cut(s) 608
BsaHI GRCGYC 1 cut(s) 770
BsaJI CCNNGG 3 cut(s) 232, 362, 417
BsaWI WCCGGW 1 cut(s) 826
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 5 cut(s) 126, 251, 499, 500, 661
Bse1I ACTGG 2 cut(s) 120, 774
Bse3DI GCAATG 2 cut(s) 714, 865
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 3 cut(s) 232, 362, 417
BseGI GGATG 1 cut(s) 489
BseLI CCNNNNNNNGG 5 cut(s) 126, 251, 499, 500, 661
BseMI GCAATG 2 cut(s) 714, 865
BseMII CTCAG 5 cut(s) 77, 93, 272, 394, 624
BseNI ACTGG 2 cut(s) 120, 774
BseXI GCAGC 4 cut(s) 54, 175, 550, 655
BsgI GTGCAG 1 cut(s) 662
BshFI GGCC 3 cut(s) 170, 240, 367
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 3 cut(s) 743, 827, 872
BslI CCNNNNNNNGG 5 cut(s) 126, 251, 499, 500, 661
BsnI GGCC 3 cut(s) 170, 240, 367
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 8 cut(s) 100, 332, 376, 409, 445, 700, 717, 793
BspACI CCGC 3 cut(s) 237, 437, 876
BspANI GGCC 3 cut(s) 170, 240, 367
BspCNI CTCAG 5 cut(s) 76, 92, 271, 393, 625
BspLI GGNNCC 2 cut(s) 137, 241
BspMI ACCTGC 1 cut(s) 123
BspPI GGATC 5 cut(s) 95, 417, 440, 725, 788
BspTI CTTAAG 1 cut(s) 536
BsrDI GCAATG 2 cut(s) 714, 865
BsrI ACTGG 2 cut(s) 120, 774
BssECI CCNNGG 3 cut(s) 232, 362, 417
BssMI GATC 8 cut(s) 100, 332, 376, 409, 445, 700, 717, 793
BssNI GRCGYC 1 cut(s) 770
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 3 cut(s) 98, 661, 680
BstACI GRCGYC 1 cut(s) 770
BstAFI CTTAAG 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 6 cut(s) 63, 79, 258, 380, 633, 692
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 1 cut(s) 489
BstH2I RGCGCY 1 cut(s) 919
BstHHI GCGC 1 cut(s) 918
BstKTI GATC 8 cut(s) 103, 335, 379, 412, 448, 703, 720, 796
BstMBI GATC 8 cut(s) 100, 332, 376, 409, 445, 700, 717, 793
BstMWI GCNNNNNNNGC 2 cut(s) 263, 748
BstNI CCWGG 1 cut(s) 364
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 362, 871
BstSFI CTRYAG 1 cut(s) 649
BstSNI TACGTA 1 cut(s) 608
BstV1I GCAGC 4 cut(s) 54, 175, 550, 655
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 3 cut(s) 170, 240, 367
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 1 cut(s) 489
BtsI GCAGTG 1 cut(s) 866
BtsIMutI CAGTG 3 cut(s) 127, 666, 866
BveI ACCTGC 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 186
CaiI CAGNNNCTG 1 cut(s) 665
CfoI GCGC 1 cut(s) 918
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 6, 609
CviAII CATG 1 cut(s) 185
CviQI GTAC 2 cut(s) 6, 609
DdeI CTNAG 6 cut(s) 63, 79, 258, 380, 633, 692
DpnI GATC 8 cut(s) 102, 334, 378, 411, 447, 702, 719, 795
DpnII GATC 8 cut(s) 100, 332, 376, 409, 445, 700, 717, 793
EciI GGCGGA 1 cut(s) 891
Eco105I TACGTA 1 cut(s) 608
Eco130I CCWWGG 1 cut(s) 232
Eco147I AGGCCT 1 cut(s) 367
Eco32I GATATC 1 cut(s) 60
EcoRI GAATTC 2 cut(s) 158, 302
EcoRII CCWGG 1 cut(s) 362
EcoRV GATATC 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 1 cut(s) 188
FatI CATG 1 cut(s) 184
FauI CCCGC 1 cut(s) 444
FauNDI CATATG 1 cut(s) 451
Fnu4HI GCNGC 5 cut(s) 68, 189, 238, 564, 644
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 5 cut(s) 68, 189, 238, 564, 644
FspBI CTAG 4 cut(s) 15, 38, 206, 233
GlaI GCGC 1 cut(s) 917
GluI GCNGC 5 cut(s) 68, 189, 238, 564, 644
HaeII RGCGCY 1 cut(s) 919
HaeIII GGCC 3 cut(s) 170, 240, 367
HapII CCGG 3 cut(s) 743, 827, 872
HhaI GCGC 1 cut(s) 918
Hin1I GRCGYC 1 cut(s) 770
Hin1II CATG 1 cut(s) 188
Hin6I GCGC 1 cut(s) 916
HinP1I GCGC 1 cut(s) 916
HindIII AAGCTT 1 cut(s) 749
HinfI GANTC 4 cut(s) 268, 596, 763, 863
HpaII CCGG 3 cut(s) 743, 827, 872
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 590
Hpy188I TCNGA 8 cut(s) 249, 261, 332, 390, 432, 624, 634, 768
Hpy188III TCNNGA 4 cut(s) 206, 272, 314, 922
Hpy8I GTNNAC 1 cut(s) 590
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 3 cut(s) 256, 631, 722
HpyCH4III ACNGT 3 cut(s) 98, 661, 680
HpyCH4IV ACGT 2 cut(s) 607, 770
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 748
HpyF3I CTNAG 6 cut(s) 63, 79, 258, 380, 633, 692
HpySE526I ACGT 2 cut(s) 607, 770
Hsp92I GRCGYC 1 cut(s) 770
Hsp92II CATG 1 cut(s) 188
HspAI GCGC 1 cut(s) 916
Kzo9I GATC 8 cut(s) 100, 332, 376, 409, 445, 700, 717, 793
LmnI GCTCC 2 cut(s) 75, 94
LpnPI CCDG 9 cut(s) 66, 118, 133, 349, 376, 756, 787, 840, 885
Lsp1109I GCAGC 4 cut(s) 54, 175, 550, 655
LweI GCATC 4 cut(s) 76, 199, 575, 741
MaeI CTAG 4 cut(s) 15, 38, 206, 233
MaeII ACGT 2 cut(s) 607, 770
MaeIII GTNAC 1 cut(s) 776
MalI GATC 8 cut(s) 102, 334, 378, 411, 447, 702, 719, 795
MboI GATC 8 cut(s) 100, 332, 376, 409, 445, 700, 717, 793
MboII GAAGA 2 cut(s) 23, 553
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 259
MnlI CCTC 9 cut(s) 45, 160, 255, 288, 292, 347, 640, 665, 831
MseI TTAA 5 cut(s) 227, 465, 537, 930, 934
MslI CAYNNNNRTG 1 cut(s) 737
MspA1I CMGCKG 1 cut(s) 67
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 3 cut(s) 743, 827, 872
MspR9I CCNGG 2 cut(s) 364, 873
MvaI CCWGG 1 cut(s) 364
MwoI GCNNNNNNNGC 2 cut(s) 263, 748
NciI CCSGG 1 cut(s) 873
NdeI CATATG 1 cut(s) 451
NdeII GATC 8 cut(s) 100, 332, 376, 409, 445, 700, 717, 793
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 2 cut(s) 137, 241
NmeAIII GCCGAG 1 cut(s) 196
NspI RCATGY 1 cut(s) 188
PacI TTAATTAA 1 cut(s) 934
PaeI GCATGC 1 cut(s) 188
PceI AGGCCT 1 cut(s) 367
PfeI GAWTC 4 cut(s) 268, 596, 763, 863
PkrI GCNGC 5 cut(s) 69, 190, 239, 565, 645
Ppu21I YACGTR 1 cut(s) 608
PshBI ATTAAT 1 cut(s) 930
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 2 cut(s) 137, 241
PspPI GGNCC 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 665
PsuI RGATCY 1 cut(s) 376
PvuII CAGCTG 1 cut(s) 67
RsaI GTAC 2 cut(s) 7, 610
RsaNI GTAC 2 cut(s) 6, 609
RseI CAYNNNNRTG 1 cut(s) 737
SaqAI TTAA 5 cut(s) 227, 465, 537, 930, 934
SatI GCNGC 5 cut(s) 68, 189, 238, 564, 644
Sau3AI GATC 8 cut(s) 100, 332, 376, 409, 445, 700, 717, 793
Sau96I GGNCC 1 cut(s) 239
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 2 cut(s) 364, 873
SduI GDGCHC 1 cut(s) 259
SfaNI GCATC 4 cut(s) 76, 199, 575, 741
SfcI CTRYAG 1 cut(s) 649
SmiMI CAYNNNNRTG 1 cut(s) 737
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
SnaBI TACGTA 1 cut(s) 608
SphI GCATGC 1 cut(s) 188
SseBI AGGCCT 1 cut(s) 367
SsiI CCGC 3 cut(s) 237, 437, 876
SspI AATATT 1 cut(s) 907
SspMI CTAG 4 cut(s) 15, 38, 206, 233
StuI AGGCCT 1 cut(s) 367
StyD4I CCNGG 2 cut(s) 362, 871
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 3 cut(s) 98, 661, 680
TaiI ACGT 2 cut(s) 610, 773
TaqI TCGA 4 cut(s) 273, 297, 412, 444
TaqII GACCGA 1 cut(s) 589
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 4 cut(s) 268, 596, 763, 863
Tru1I TTAA 5 cut(s) 227, 465, 537, 930, 934
Tru9I TTAA 5 cut(s) 227, 465, 537, 930, 934
TscAI CASTG 3 cut(s) 127, 666, 873
TseI GCWGC 4 cut(s) 67, 188, 563, 643
TspDTI ATGAA 3 cut(s) 560, 741, 876
TspRI CASTG 3 cut(s) 127, 666, 873
Vha464I CTTAAG 1 cut(s) 536
VspI ATTAAT 1 cut(s) 930
XapI RAATTY 4 cut(s) 158, 223, 302, 391
XbaI TCTAGA 1 cut(s) 205
XceI RCATGY 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmaJI CCTAGG 1 cut(s) 232
XspI CTAG 4 cut(s) 15, 38, 206, 233
ZraI GACGTC 1 cut(s) 771
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.