Rw6G030310

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001867
Physical Location & Seq
Forward (+)
54493018 .. 54496819
3802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G030310.1

Sequence Viewer

Length: 849 bp
ATGCCCCTCCCGAACGTGAATGATACTGACCGCCTTCAGTTTGCTTTGAACTTGGAATTCTTGGAGGCTGAGTTTTTCCAGTTTGGTGCTCTTGGAAGAGGGCTTGACAGTATCAGTCCAAATTTGGCCGGAGGTGGTCCGCCTCCTTCTGGTGCGCAGAAGGCGTTGCTCAACCCTGTTGTTGCTCGAATCATCGAGGAATTCGGTTATCAAATTTTCTTATATATATACTTGATCATGAAATTTTCATCGATTATCGATGCAGTAGGAGGGATTCCGAGACCTCTGTTAAACATCAGCCGCGAAAATTTTGCGAGAGGTTTTAACGGCATAGTGGGTTTCAACCTGATCCCTCCTATTAATCCCTATGCAAACACAGTCAATTATCTTTTAGCAGCCTATTCAATCCTTTATATTGGAATAGGAGGCTATGTTGGTAGAATCCTAATACGTACATTATTGTATACAAGAGCCAATCAATTGGTACCTCCGTATCCGCTCACAGTGGCCAAGTTCACAAATCATATTTCAACCCGTCGGAACTTCTTCGGCGGGTGTGGCAACAAAGATGAAGGCATCCTGTTACCAAACAACACGCTCGGGGCTGAGAACCGGACTACAAGTAACATCCTATCGGAGGATTTCAATTTAGGGTTGTATACCAGAACACCAGCTGAGATCTTAAGGATTGTGCATGGAGGCAATGAATCTGTGGCCGACGGATTTTTCCCTCAAGGTGCTAATGGAAACATTGCAATGCGCTACCTCAACAATGGAACACTACTACAAAAACTGCATCACACAACACCAATCACACAACGGAACATAAATCATCTATTGTGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

282

Amino Acids

30.98

Weight (kDa)

8.87

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 7 - 147 1.5e-13 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 156
Acc65I GGTACC 1 cut(s) 484
AccB1I GGYRCC 1 cut(s) 484
AccBSI CCGCTC 1 cut(s) 499
AccI GTMKAC 2 cut(s) 464, 659
AccII CGCG 1 cut(s) 303
AciI CCGC 5 cut(s) 31, 140, 301, 497, 552
AclWI GGATC 1 cut(s) 343
AcoI YGGCCR 3 cut(s) 126, 507, 714
AcsI RAATTY 6 cut(s) 56, 121, 200, 213, 242, 307
AcuI CTGAAG 1 cut(s) 20
AfaI GTAC 2 cut(s) 454, 486
AfiI CCNNNNNNNGG 2 cut(s) 149, 637
AflII CTTAAG 1 cut(s) 682
AgsI TTSAA 5 cut(s) 49, 343, 405, 531, 646
AluBI AGCT 1 cut(s) 674
AluI AGCT 1 cut(s) 674
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 1 cut(s) 343
Ama87I CYCGRG 1 cut(s) 599
AoxI GGCC 3 cut(s) 126, 507, 714
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 6 cut(s) 56, 121, 200, 213, 242, 307
AseI ATTAAT 1 cut(s) 360
Asp700I GAANNNNTTC 1 cut(s) 545
Asp718I GGTACC 1 cut(s) 484
AspLEI GCGC 2 cut(s) 157, 762
AspS9I GGNCC 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 599
AvaII GGWCC 1 cut(s) 137
BaeI ACNNNNGTAYC 4 cut(s) 476, 476, 509, 509
BalI TGGCCA 1 cut(s) 509
BanI GGYRCC 1 cut(s) 484
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 407
BceAI ACGGC 1 cut(s) 343
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciVI GTATCC 1 cut(s) 504
BclI TGATCA 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 274
BfrI CTTAAG 1 cut(s) 682
BfuI GTATCC 1 cut(s) 504
BglII AGATCT 1 cut(s) 678
BisI GCNGC 2 cut(s) 301, 396
BlsI GCNGC 2 cut(s) 302, 397
Bme18I GGWCC 1 cut(s) 137
BmeT110I CYCGRG 1 cut(s) 599
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 486
BmsI GCATC 3 cut(s) 250, 585, 805
BpuEI CTTGAG 1 cut(s) 717
Bsa29I ATCGAT 2 cut(s) 251, 258
BsaAI YACGTR 1 cut(s) 452
BsaI GGTCTC 1 cut(s) 274
BsaWI WCCGGW 1 cut(s) 612
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 417, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 637
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 3 cut(s) 709, 750, 762
BseCI ATCGAT 2 cut(s) 251, 258
BseGI GGATG 2 cut(s) 576, 627
BseLI CCNNNNNNNGG 2 cut(s) 149, 637
BseMI GCAATG 3 cut(s) 709, 750, 762
BseMII CTCAG 3 cut(s) 60, 597, 666
BseNI ACTGG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 3 cut(s) 128, 509, 716
BshNI GGYRCC 1 cut(s) 484
BshVI ATCGAT 2 cut(s) 251, 258
BsiHKAI GWGCWC 1 cut(s) 91
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 2 cut(s) 129, 613
BslI CCNNNNNNNGG 2 cut(s) 149, 637
BsmAI GTCTC 1 cut(s) 274
BsnI GGCC 3 cut(s) 128, 509, 716
Bso31I GGTCTC 1 cut(s) 274
BsoBI CYCGRG 1 cut(s) 599
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 3 cut(s) 234, 348, 678
BspACI CCGC 5 cut(s) 31, 140, 301, 497, 552
BspANI GGCC 3 cut(s) 128, 509, 716
BspCNI CTCAG 3 cut(s) 61, 598, 667
BspDI ATCGAT 2 cut(s) 251, 258
BspFNI CGCG 1 cut(s) 303
BspHI TCATGA 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 486
BspPI GGATC 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 484
BspTI CTTAAG 1 cut(s) 682
BspTNI GGTCTC 1 cut(s) 274
BsrBI CCGCTC 1 cut(s) 499
BsrDI GCAATG 3 cut(s) 709, 750, 762
BsrI ACTGG 1 cut(s) 79
BssMI GATC 3 cut(s) 234, 348, 678
BssNAI GTATAC 2 cut(s) 465, 660
Bst1107I GTATAC 2 cut(s) 465, 660
Bst4CI ACNGT 3 cut(s) 110, 379, 505
Bst6I CTCTTC 1 cut(s) 91
BstAFI CTTAAG 1 cut(s) 682
BstBAI YACGTR 1 cut(s) 452
BstDEI CTNAG 3 cut(s) 69, 606, 675
BstENI CCTNNNNNAGG 1 cut(s) 635
BstF5I GGATG 2 cut(s) 576, 627
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 2 cut(s) 157, 762
BstKTI GATC 3 cut(s) 237, 351, 681
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 3 cut(s) 234, 348, 678
BstMWI GCNNNNNNNGC 2 cut(s) 161, 558
BstSNI TACGTA 1 cut(s) 452
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 678
BstXI CCANNNNNNTGG 1 cut(s) 481
BstYI RGATCY 1 cut(s) 678
BstZ17I GTATAC 2 cut(s) 465, 660
Bsu15I ATCGAT 2 cut(s) 251, 258
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 3 cut(s) 128, 509, 716
BsuTUI ATCGAT 2 cut(s) 251, 258
BtsCI GGATG 2 cut(s) 576, 627
BtsIMutI CAGTG 1 cut(s) 510
CciI TCATGA 1 cut(s) 237
CfoI GCGC 2 cut(s) 157, 762
Cfr13I GGNCC 1 cut(s) 137
ClaI ATCGAT 2 cut(s) 251, 258
Csp6I GTAC 2 cut(s) 453, 485
CviAII CATG 2 cut(s) 238, 695
CviQI GTAC 2 cut(s) 453, 485
DdeI CTNAG 3 cut(s) 69, 606, 675
DpnI GATC 3 cut(s) 236, 350, 680
DpnII GATC 3 cut(s) 234, 348, 678
EaeI YGGCCR 3 cut(s) 126, 507, 714
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
EciI GGCGGA 1 cut(s) 129
Eco105I TACGTA 1 cut(s) 452
Eco31I GGTCTC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 599
EcoNI CCTNNNNNAGG 1 cut(s) 635
EcoRI GAATTC 2 cut(s) 56, 200
FaeI CATG 2 cut(s) 241, 698
FatI CATG 2 cut(s) 237, 694
FauI CCCGC 1 cut(s) 545
FbaI TGATCA 1 cut(s) 234
FblI GTMKAC 2 cut(s) 464, 659
Fnu4HI GCNGC 2 cut(s) 301, 396
FokI GGATG 2 cut(s) 563, 614
Fsp4HI GCNGC 2 cut(s) 301, 396
FspI TGCGCA 1 cut(s) 156
GlaI GCGC 2 cut(s) 156, 761
GluI GCNGC 2 cut(s) 301, 396
HaeIII GGCC 3 cut(s) 128, 509, 716
HapII CCGG 2 cut(s) 129, 613
HhaI GCGC 2 cut(s) 157, 762
Hin1II CATG 2 cut(s) 241, 698
Hin6I GCGC 2 cut(s) 155, 760
HinP1I GCGC 2 cut(s) 155, 760
HinfI GANTC 4 cut(s) 189, 274, 441, 707
HpaII CCGG 2 cut(s) 129, 613
Hpy166II GTNNAC 3 cut(s) 465, 516, 660
Hpy188I TCNGA 3 cut(s) 279, 540, 637
Hpy188III TCNNGA 2 cut(s) 10, 238
Hpy8I GTNNAC 3 cut(s) 465, 516, 660
Hpy99I CGWCG 2 cut(s) 540, 722
HpyAV CCTTC 4 cut(s) 44, 154, 156, 566
HpyCH4III ACNGT 3 cut(s) 110, 379, 505
HpyCH4IV ACGT 2 cut(s) 15, 451
HpyCH4V TGCA 5 cut(s) 263, 371, 694, 755, 796
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 558
HpyF3I CTNAG 3 cut(s) 69, 606, 675
HpySE526I ACGT 2 cut(s) 15, 451
Hsp92II CATG 2 cut(s) 241, 698
HspAI GCGC 2 cut(s) 155, 760
KpnI GGTACC 1 cut(s) 488
Ksp22I TGATCA 1 cut(s) 234
Kzo9I GATC 3 cut(s) 234, 348, 678
LpnPI CCDG 9 cut(s) 92, 135, 142, 189, 359, 593, 626, 676, 684
Lsp1109I GCAGC 1 cut(s) 407
LweI GCATC 3 cut(s) 250, 585, 805
MaeII ACGT 2 cut(s) 15, 451
MaeIII GTNAC 2 cut(s) 582, 623
MalI GATC 3 cut(s) 236, 350, 680
MbiI CCGCTC 1 cut(s) 499
MboI GATC 3 cut(s) 234, 348, 678
MboII GAAGA 2 cut(s) 108, 538
MfeI CAATTG 1 cut(s) 479
MflI RGATCY 1 cut(s) 678
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 509
MluCI AATT 9 cut(s) 56, 121, 200, 213, 242, 307, 382, 479, 646
MluNI TGGCCA 1 cut(s) 509
MmeI TCCRAC 1 cut(s) 518
Mox20I TGGCCA 1 cut(s) 509
MroXI GAANNNNTTC 1 cut(s) 545
MscI TGGCCA 1 cut(s) 509
MseI TTAA 5 cut(s) 290, 324, 360, 683, 847
MslI CAYNNNNRTG 1 cut(s) 755
Msp20I TGGCCA 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 674
MspCI CTTAAG 1 cut(s) 682
MspI CCGG 2 cut(s) 129, 613
MunI CAATTG 1 cut(s) 479
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 161, 558
NdeII GATC 3 cut(s) 234, 348, 678
NlaIII CATG 2 cut(s) 241, 698
NlaIV GGNNCC 1 cut(s) 486
NsbI TGCGCA 1 cut(s) 156
PagI TCATGA 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 4 cut(s) 189, 274, 441, 707
PkrI GCNGC 2 cut(s) 302, 397
Ppu21I YACGTR 1 cut(s) 452
PshBI ATTAAT 1 cut(s) 360
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 1 cut(s) 137
PsuI RGATCY 1 cut(s) 678
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 2 cut(s) 454, 486
RsaNI GTAC 2 cut(s) 453, 485
RseI CAYNNNNRTG 1 cut(s) 755
SaqAI TTAA 5 cut(s) 290, 324, 360, 683, 847
SatI GCNGC 2 cut(s) 301, 396
Sau3AI GATC 3 cut(s) 234, 348, 678
Sau96I GGNCC 1 cut(s) 137
SduI GDGCHC 1 cut(s) 91
SfaNI GCATC 3 cut(s) 250, 585, 805
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 2 cut(s) 682, 732
SmoI CTYRAG 2 cut(s) 682, 732
SnaBI TACGTA 1 cut(s) 452
Sse9I AATT 9 cut(s) 56, 121, 200, 213, 242, 307, 382, 479, 646
SsiI CCGC 5 cut(s) 31, 140, 301, 497, 552
TaaI ACNGT 3 cut(s) 110, 379, 505
TaiI ACGT 2 cut(s) 18, 454
TaqI TCGA 4 cut(s) 187, 195, 251, 258
TasI AATT 9 cut(s) 56, 121, 200, 213, 242, 307, 382, 479, 646
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 4 cut(s) 189, 274, 441, 707
Tru1I TTAA 5 cut(s) 290, 324, 360, 683, 847
Tru9I TTAA 5 cut(s) 290, 324, 360, 683, 847
TscAI CASTG 1 cut(s) 510
TseI GCWGC 1 cut(s) 395
TspDTI ATGAA 4 cut(s) 237, 254, 585, 720
TspGWI ACGGA 3 cut(s) 480, 735, 835
TspRI CASTG 1 cut(s) 510
Vha464I CTTAAG 1 cut(s) 682
VpaK11BI GGWCC 1 cut(s) 137
VspI ATTAAT 1 cut(s) 360
XagI CCTNNNNNAGG 1 cut(s) 635
XapI RAATTY 6 cut(s) 56, 121, 200, 213, 242, 307
XmiI GTMKAC 2 cut(s) 464, 659
XmnI GAANNNNTTC 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.