RLG00000032763

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001867
Physical Location & Seq
Reverse (-)
18750595 .. 18753631
3037 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032763

Sequence Viewer

Length: 885 bp
ATGCACCAGGTCCTGGGTGCCACTGATAACAGTACTCTCAAGTACTGCGGACCCATTACAGCCACTGATACTGATCGAGTTCAATTTGCTTTGAACTTGGAGTTCTTGGAGACTGAGTTTTTTCTGTACGGTGCTCTTGGCAAAGGCCTCGACAGCATCAATCCTGGTTATAGCCAAGGCGGTCCTCCTCCTATTGGTGGTCAGAAGGCCCTTCTTGAAGACCCTGTTGTCGCTCGTATCATTGAGGAATTTGCTTATGAAGAAGTTGGCCATATCAGAGCGATTACTAGCACAGTAGGAGGATTTCCAAGGCCTCTCTTAAATATCAGCCGTGAGCAATTTGCAAGAAGTTTCAACGATGTAGTGGGTTACCCCCTCATTCCTCCATTTGAACCCTATGCAAACTCTCTCAATTTTCTGCTAGCAGCCTATATCATCCCGTATGTGGGACTAAATGGCTATGTCAGCACCCTTCCAAGCCTTAACAGCACTATTTCTCGCAGCTTGGTTGCAAAACTCTTGGCAATTGAAAGTGGACAAGATGCAGTGATACGTACGTTACTGTATGAGAGAGCAAACGAGAGGGTGGTTCCGTACAAATTCACGGTGGCTGAATTAACCAACCTTATCTCTGCAAGACGGAACTCCCTCGGTGGGTGTGGCAACAAAGATGAAGGCATCATACTGCCTAACAAGACGCTCGGGGCAGAAAATCAGACAACCAGCAATGTTCTATCCGCTGATGCAAATTCGCTTGCCTACGCGAGAACCCCGGCTGAGATCTTGAGGATTCTCTATGGAAGTTTCAATGAATCTGTGCCTGGCGGGTTTTTCCCTAAAGGAGCTAATGGAGTTATTGCAAAGAGCTACCTTACCAGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

295

Amino Acids

31.79

Weight (kDa)

5.56

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 22 - 190 3.5e-31 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 17
AccB7I CCANNNNNTGG 1 cut(s) 13
AccII CGCG 1 cut(s) 764
AciI CCGC 4 cut(s) 48, 180, 738, 825
AcoI YGGCCR 1 cut(s) 268
AcsI RAATTY 3 cut(s) 248, 599, 748
AfaI GTAC 5 cut(s) 34, 44, 128, 556, 596
AfiI CCNNNNNNNGG 6 cut(s) 13, 194, 197, 445, 446, 654
AgsI TTSAA 7 cut(s) 83, 94, 218, 355, 392, 530, 808
AjnI CCWGG 5 cut(s) 6, 12, 163, 820, 875
AluBI AGCT 3 cut(s) 504, 845, 867
AluI AGCT 3 cut(s) 504, 845, 867
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 104
AlwNI CAGNNNCTG 2 cut(s) 13, 65
Ama87I CYCGRG 1 cut(s) 701
AoxI GGCC 4 cut(s) 145, 207, 268, 311
ApeKI GCWGC 2 cut(s) 425, 501
ApoI RAATTY 3 cut(s) 248, 599, 748
AspS9I GGNCC 4 cut(s) 10, 50, 182, 208
AsuC2I CCSGG 1 cut(s) 773
AsuNHI GCTAGC 1 cut(s) 421
AvaI CYCGRG 1 cut(s) 701
AvaII GGWCC 3 cut(s) 10, 50, 182
BaeI ACNNNNGTAYC 2 cut(s) 542, 575
BalI TGGCCA 1 cut(s) 270
BanI GGYRCC 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 666, 698
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 437, 513
BceAI ACGGC 1 cut(s) 315
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 5 cut(s) 8, 14, 165, 822, 877
BcnI CCSGG 1 cut(s) 773
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 2 cut(s) 288, 422
BglII AGATCT 1 cut(s) 780
BisI GCNGC 2 cut(s) 426, 502
BlsI GCNGC 2 cut(s) 427, 503
BmcAI AGTACT 2 cut(s) 34, 44
Bme1390I CCNGG 6 cut(s) 8, 14, 165, 773, 822, 877
Bme18I GGWCC 3 cut(s) 10, 50, 182
BmeT110I CYCGRG 1 cut(s) 701
BmgT120I GGNCC 4 cut(s) 10, 50, 182, 208
BmiI GGNNCC 3 cut(s) 19, 52, 591
BmrFI CCNGG 6 cut(s) 8, 14, 165, 773, 822, 877
BmsI GCATC 4 cut(s) 165, 532, 687, 733
BmtI GCTAGC 1 cut(s) 425
BpiI GAAGAC 1 cut(s) 225
BpuEI CTTGAG 2 cut(s) 23, 805
BpuMI CCSGG 1 cut(s) 773
BsaAI YACGTR 1 cut(s) 554
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 5 cut(s) 13, 175, 308, 649, 771
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 6 cut(s) 13, 194, 197, 445, 446, 654
Bse3DI GCAATG 1 cut(s) 733
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 5 cut(s) 8, 14, 165, 822, 877
BseDI CCNNGG 5 cut(s) 13, 175, 308, 649, 771
BseGI GGATG 1 cut(s) 435
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 6 cut(s) 13, 194, 197, 445, 446, 654
BseMI GCAATG 1 cut(s) 733
BseMII CTCAG 2 cut(s) 105, 768
BseRI GAGGAG 1 cut(s) 177
BseXI GCAGC 2 cut(s) 437, 513
Bsh1236I CGCG 1 cut(s) 764
BshFI GGCC 4 cut(s) 147, 209, 270, 313
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 701
BsiSI CCGG 1 cut(s) 773
BsiWI CGTACG 1 cut(s) 554
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 6 cut(s) 13, 194, 197, 445, 446, 654
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 462
BsnI GGCC 4 cut(s) 147, 209, 270, 313
BsoBI CYCGRG 1 cut(s) 701
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 3 cut(s) 73, 780, 879
BspACI CCGC 4 cut(s) 48, 180, 738, 825
BspANI GGCC 4 cut(s) 147, 209, 270, 313
BspCNI CTCAG 2 cut(s) 106, 769
BspFNI CGCG 1 cut(s) 764
BspLI GGNNCC 3 cut(s) 19, 52, 591
BspOI GCTAGC 1 cut(s) 425
BspT107I GGYRCC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 733
BssECI CCNNGG 5 cut(s) 13, 175, 308, 649, 771
BssMI GATC 3 cut(s) 73, 780, 879
BssT1I CCWWGG 2 cut(s) 175, 308
Bst2UI CCWGG 5 cut(s) 8, 14, 165, 822, 877
Bst4CI ACNGT 5 cut(s) 32, 131, 295, 564, 607
BstBAI YACGTR 1 cut(s) 554
BstC8I GCNNGC 2 cut(s) 423, 756
BstDEI CTNAG 2 cut(s) 114, 777
BstEII GGTNACC 1 cut(s) 368
BstF5I GGATG 1 cut(s) 435
BstFNI CGCG 1 cut(s) 764
BstKTI GATC 3 cut(s) 76, 783, 882
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 3 cut(s) 73, 780, 879
BstMWI GCNNNNNNNGC 3 cut(s) 153, 465, 486
BstNI CCWGG 5 cut(s) 8, 14, 165, 822, 877
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 6 cut(s) 6, 12, 163, 771, 820, 875
BstSNI TACGTA 1 cut(s) 554
BstUI CGCG 1 cut(s) 764
BstV1I GCAGC 2 cut(s) 437, 513
BstV2I GAAGAC 1 cut(s) 225
BstX2I RGATCY 2 cut(s) 780, 879
BstYI RGATCY 2 cut(s) 780, 879
BsuRI GGCC 4 cut(s) 147, 209, 270, 313
BtsCI GGATG 1 cut(s) 435
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 3 cut(s) 21, 63, 552
Cac8I GCNNGC 2 cut(s) 423, 756
CaiI CAGNNNCTG 2 cut(s) 13, 65
Cfr13I GGNCC 4 cut(s) 10, 50, 182, 208
CseI GACGC 1 cut(s) 706
CsiI ACCWGGT 1 cut(s) 6
Csp6I GTAC 5 cut(s) 33, 43, 127, 555, 595
CviQI GTAC 5 cut(s) 33, 43, 127, 555, 595
DdeI CTNAG 2 cut(s) 114, 777
DpnI GATC 3 cut(s) 75, 782, 881
DpnII GATC 3 cut(s) 73, 780, 879
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 268
Eco105I TACGTA 1 cut(s) 554
Eco130I CCWWGG 2 cut(s) 175, 308
Eco147I AGGCCT 2 cut(s) 147, 313
Eco47I GGWCC 3 cut(s) 10, 50, 182
Eco88I CYCGRG 1 cut(s) 701
Eco91I GGTNACC 1 cut(s) 368
EcoO109I RGGNCCY 2 cut(s) 10, 208
EcoO65I GGTNACC 1 cut(s) 368
EcoRII CCWGG 5 cut(s) 6, 12, 163, 820, 875
EcoT14I CCWWGG 2 cut(s) 175, 308
ErhI CCWWGG 2 cut(s) 175, 308
FaqI GGGAC 1 cut(s) 462
FauI CCCGC 1 cut(s) 818
Fnu4HI GCNGC 2 cut(s) 426, 502
FokI GGATG 1 cut(s) 422
Fsp4HI GCNGC 2 cut(s) 426, 502
FspBI CTAG 2 cut(s) 288, 422
GluI GCNGC 2 cut(s) 426, 502
HaeIII GGCC 4 cut(s) 147, 209, 270, 313
HapII CCGG 1 cut(s) 773
HgaI GACGC 1 cut(s) 706
HinfI GANTC 2 cut(s) 790, 812
HpaII CCGG 1 cut(s) 773
Hpy166II GTNNAC 1 cut(s) 536
Hpy188I TCNGA 3 cut(s) 204, 278, 717
Hpy188III TCNNGA 2 cut(s) 215, 784
Hpy8I GTNNAC 1 cut(s) 536
HpyAV CCTTC 4 cut(s) 199, 221, 482, 668
HpyCH4III ACNGT 5 cut(s) 32, 131, 295, 564, 607
HpyCH4IV ACGT 2 cut(s) 553, 557
HpyCH4V TGCA 8 cut(s) 4, 344, 401, 512, 545, 635, 746, 860
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 465, 486
HpyF3I CTNAG 2 cut(s) 114, 777
HpySE526I ACGT 2 cut(s) 553, 557
Kzo9I GATC 3 cut(s) 73, 780, 879
LmnI GCTCC 1 cut(s) 842
Lsp1109I GCAGC 2 cut(s) 437, 513
LweI GCATC 4 cut(s) 165, 532, 687, 733
MabI ACCWGGT 1 cut(s) 6
MaeI CTAG 2 cut(s) 288, 422
MaeII ACGT 2 cut(s) 553, 557
MaeIII GTNAC 2 cut(s) 368, 558
MalI GATC 3 cut(s) 75, 782, 881
MboI GATC 3 cut(s) 73, 780, 879
MboII GAAGA 2 cut(s) 230, 272
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 2 cut(s) 780, 879
MhlI GDGCHC 1 cut(s) 136
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 8 cut(s) 83, 248, 338, 412, 525, 599, 614, 748
MluNI TGGCCA 1 cut(s) 270
Mox20I TGGCCA 1 cut(s) 270
MscI TGGCCA 1 cut(s) 270
MseI TTAA 3 cut(s) 320, 483, 617
Msp20I TGGCCA 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 740
MspI CCGG 1 cut(s) 773
MspR9I CCNGG 6 cut(s) 8, 14, 165, 773, 822, 877
MunI CAATTG 1 cut(s) 525
MvaI CCWGG 5 cut(s) 8, 14, 165, 822, 877
MvnI CGCG 1 cut(s) 764
MwoI GCNNNNNNNGC 3 cut(s) 153, 465, 486
NciI CCSGG 1 cut(s) 773
NdeII GATC 3 cut(s) 73, 780, 879
NheI GCTAGC 1 cut(s) 421
NlaIV GGNNCC 3 cut(s) 19, 52, 591
PceI AGGCCT 2 cut(s) 147, 313
PfeI GAWTC 2 cut(s) 790, 812
Pfl23II CGTACG 1 cut(s) 554
PflMI CCANNNNNTGG 1 cut(s) 13
PkrI GCNGC 2 cut(s) 427, 503
Ppu21I YACGTR 1 cut(s) 554
PpuMI RGGWCCY 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 10
Psp6I CCWGG 5 cut(s) 6, 12, 163, 820, 875
PspEI GGTNACC 1 cut(s) 368
PspGI CCWGG 5 cut(s) 6, 12, 163, 820, 875
PspLI CGTACG 1 cut(s) 554
PspN4I GGNNCC 3 cut(s) 19, 52, 591
PspPI GGNCC 4 cut(s) 10, 50, 182, 208
PspPPI RGGWCCY 1 cut(s) 10
PstNI CAGNNNCTG 2 cut(s) 13, 65
PsuI RGATCY 2 cut(s) 780, 879
RsaI GTAC 5 cut(s) 34, 44, 128, 556, 596
RsaNI GTAC 5 cut(s) 33, 43, 127, 555, 595
SaqAI TTAA 3 cut(s) 320, 483, 617
SatI GCNGC 2 cut(s) 426, 502
Sau3AI GATC 3 cut(s) 73, 780, 879
Sau96I GGNCC 4 cut(s) 10, 50, 182, 208
ScaI AGTACT 2 cut(s) 34, 44
ScrFI CCNGG 6 cut(s) 8, 14, 165, 773, 822, 877
SduI GDGCHC 1 cut(s) 136
SetI ASST 8 cut(s) 12, 506, 556, 560, 627, 847, 869, 873
SexAI ACCWGGT 1 cut(s) 6
SfaNI GCATC 4 cut(s) 165, 532, 687, 733
SinI GGWCC 3 cut(s) 10, 50, 182
SmlI CTYRAG 2 cut(s) 38, 784
SmoI CTYRAG 2 cut(s) 38, 784
SnaBI TACGTA 1 cut(s) 554
Sse9I AATT 8 cut(s) 83, 248, 338, 412, 525, 599, 614, 748
SseBI AGGCCT 2 cut(s) 147, 313
SsiI CCGC 4 cut(s) 48, 180, 738, 825
SspMI CTAG 2 cut(s) 288, 422
StuI AGGCCT 2 cut(s) 147, 313
StyD4I CCNGG 6 cut(s) 6, 12, 163, 771, 820, 875
StyI CCWWGG 2 cut(s) 175, 308
TaaI ACNGT 5 cut(s) 32, 131, 295, 564, 607
TaiI ACGT 2 cut(s) 556, 560
TaqI TCGA 2 cut(s) 76, 150
TasI AATT 8 cut(s) 83, 248, 338, 412, 525, 599, 614, 748
TatI WGTACW 2 cut(s) 32, 42
TfiI GAWTC 2 cut(s) 790, 812
Tru1I TTAA 3 cut(s) 320, 483, 617
Tru9I TTAA 3 cut(s) 320, 483, 617
TscAI CASTG 3 cut(s) 28, 70, 552
TseI GCWGC 2 cut(s) 425, 501
TspDTI ATGAA 3 cut(s) 273, 687, 825
TspGWI ACGGA 2 cut(s) 582, 655
TspRI CASTG 3 cut(s) 28, 70, 552
Van91I CCANNNNNTGG 1 cut(s) 13
VpaK11BI GGWCC 3 cut(s) 10, 50, 182
XapI RAATTY 3 cut(s) 248, 599, 748
XspI CTAG 2 cut(s) 288, 422
ZrmI AGTACT 2 cut(s) 34, 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.