FvH4_2g25280

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001867
Physical Location & Seq
Forward (+)
20570064 .. 20571897
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25280.t2

Sequence Viewer

Length: 945 bp
ATGGCTACTTCAAAGAATGCTAGTACTAGTGCCTTTGTTCTTCCTCTAGCTTTCTGTTTAGTTGGGATATCTCAGCTGCTGCTTTGCTCAGGTCATGCTCCCAACTGTGATCCCAATTTGATTGAGGCCAGAGATCGGGACCGGCTTCAGTTTGCTTTGAACTTGGAATTCTTGGAGGCTGAGTTTTTCCTTTATTCTGCCCTTGGAAAAGGTCTAGATTATATCAGTCCAAATTTAAGCCTAGGCGGACCCCCGCCGATCGGTGCTCAGAAGGCGAATCTCGACCCTCTTGTTCGTCGTATGACTGAGGAATTCGGTTTACAAGAAGTTGGTCATGTCAGATCAATTATTAGAAAAGAAGGAGGATTTCGCAAGCCTTTGTTAGATCTCAGTTGTCAGAATTTCGCAAAGCTAATGGATCGAGCAGTGGGTTTCACTCTGATCCCGCCATTTGATCCATATGCAGACTCATTGAAGTTTCTCTTGGCAACCTACTTGATCCCTTACGTTGGAGAAAATGGTTATGTTGGCACAATTCCATACCTTAGAAAAAGAAAATCTCGCAGATTGGCTGCATCACTGTTGGCGGTTGAGGCGGGACAAGATGCAATCGTACGTGCATTTCTGTATCAAAGAGCCTATGAGAAGGTGCAGCCCTATAACCTCACAGTGGCTCATTTTACAAACCGTATTTCTATGCTTAGGAACGAGCTTGGAATGTGTGGGATCAAAGATGAAGGCATCATAGTGCCGGAAGAGCTCGGGGCCGAGAATCGGACGTCCAGTAACATCATATCGGCCGATCCTAGCTCGCTTGCGTATGCAAGAACACCGCCGGAGATATTGAGGATTGTTTACTCAAGTGGGAATGAATCACTGCCGGGAGGATTTTACCCTGAAGGTGCAAATGGGAAAATTGCAAGGAGCTTCCTGAAGATCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

315

Amino Acids

34.55

Weight (kDa)

8.71

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 45 - 171 7.8e-15 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 782
AciI CCGC 6 cut(s) 246, 254, 446, 587, 596, 833
AclWI GGATC 7 cut(s) 104, 426, 436, 449, 493, 734, 797
AcoI YGGCCR 1 cut(s) 798
AcsI RAATTY 4 cut(s) 167, 232, 311, 400
AcuI CTGAAG 2 cut(s) 131, 918
AcyI GRCGYC 1 cut(s) 779
AfaI GTAC 2 cut(s) 25, 615
AfiI CCNNNNNNNGG 5 cut(s) 135, 260, 509, 670, 774
AgsI TTSAA 3 cut(s) 12, 160, 475
AhlI ACTAGT 1 cut(s) 26
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AluBI AGCT 7 cut(s) 50, 76, 412, 712, 760, 810, 927
AluI AGCT 7 cut(s) 50, 76, 412, 712, 760, 810, 927
Alw21I GWGCWC 2 cut(s) 268, 762
AlwI GGATC 7 cut(s) 104, 426, 436, 449, 493, 734, 797
AlwNI CAGNNNCTG 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 3 cut(s) 126, 765, 798
ApeKI GCWGC 4 cut(s) 76, 79, 572, 652
ApoI RAATTY 4 cut(s) 167, 232, 311, 400
AspA2I CCTAGG 1 cut(s) 241
AspS9I GGNCC 3 cut(s) 139, 248, 765
AsuC2I CCSGG 1 cut(s) 882
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 2 cut(s) 139, 248
AvrII CCTAGG 1 cut(s) 241
BanII GRGCYC 1 cut(s) 762
Bbv12I GWGCWC 2 cut(s) 268, 762
BbvI GCAGC 4 cut(s) 63, 66, 559, 664
BcnI CCSGG 1 cut(s) 882
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 6 cut(s) 21, 27, 47, 215, 242, 807
BglII AGATCT 1 cut(s) 385
BisI GCNGC 4 cut(s) 77, 80, 573, 653
BlnI CCTAGG 1 cut(s) 241
BlsI GCNGC 4 cut(s) 78, 81, 574, 654
BmcAI AGTACT 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 882
Bme18I GGWCC 2 cut(s) 139, 248
BmeT110I CYCGRG 1 cut(s) 761
BmgT120I GGNCC 3 cut(s) 139, 248, 765
BmiI GGNNCC 3 cut(s) 140, 250, 766
BmrFI CCNGG 1 cut(s) 882
BmsI GCATC 3 cut(s) 584, 595, 750
Bpu10I CCTNAGC 2 cut(s) 88, 701
BpuEI CTTGAG 1 cut(s) 844
BpuMI CCSGG 1 cut(s) 882
BsaAI YACGTR 1 cut(s) 617
BsaHI GRCGYC 1 cut(s) 779
BsaJI CCNNGG 2 cut(s) 202, 241
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 5 cut(s) 135, 260, 509, 670, 774
Bse118I RCCGGY 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 783
BseDI CCNNGG 2 cut(s) 202, 241
BseLI CCNNNNNNNGG 5 cut(s) 135, 260, 509, 670, 774
BseMII CTCAG 6 cut(s) 86, 102, 171, 281, 297, 403
BseNI ACTGG 1 cut(s) 783
BseX3I CGGCCG 1 cut(s) 798
BseXI GCAGC 4 cut(s) 63, 66, 559, 664
BsgI GTGCAG 1 cut(s) 671
Bsh1285I CGRYCG 2 cut(s) 261, 801
BshFI GGCC 3 cut(s) 128, 767, 800
BsiEI CGRYCG 2 cut(s) 261, 801
BsiHKAI GWGCWC 2 cut(s) 268, 762
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 4 cut(s) 142, 752, 836, 881
BsiWI CGTACG 1 cut(s) 613
BslFI GGGAC 2 cut(s) 152, 612
BslI CCNNNNNNNGG 5 cut(s) 135, 260, 509, 670, 774
BsmFI GGGAC 2 cut(s) 152, 612
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 3 cut(s) 128, 767, 800
BsoBI CYCGRG 1 cut(s) 761
Bsp1286I GDGCHC 2 cut(s) 268, 762
BspACI CCGC 6 cut(s) 246, 254, 446, 587, 596, 833
BspANI GGCC 3 cut(s) 128, 767, 800
BspCNI CTCAG 6 cut(s) 85, 101, 172, 280, 298, 402
BspLI GGNNCC 3 cut(s) 140, 250, 766
BspPI GGATC 7 cut(s) 104, 426, 436, 449, 493, 734, 797
BspQI GCTCTTC 1 cut(s) 750
BsrFI RCCGGY 1 cut(s) 141
BsrI ACTGG 1 cut(s) 783
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 2 cut(s) 202, 241
BssNI GRCGYC 1 cut(s) 779
BssT1I CCWWGG 2 cut(s) 202, 241
Bst4CI ACNGT 4 cut(s) 107, 582, 670, 689
Bst6I CTCTTC 1 cut(s) 750
BstACI GRCGYC 1 cut(s) 779
BstBAI YACGTR 1 cut(s) 617
BstC8I GCNNGC 3 cut(s) 374, 812, 816
BstDEI CTNAG 8 cut(s) 72, 88, 180, 267, 306, 389, 545, 701
BstMCI CGRYCG 2 cut(s) 261, 801
BstMWI GCNNNNNNNGC 3 cut(s) 272, 593, 757
BstSCI CCNGG 1 cut(s) 880
BstV1I GCAGC 4 cut(s) 63, 66, 559, 664
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BstZI CGGCCG 1 cut(s) 798
BsuRI GGCC 3 cut(s) 128, 767, 800
BtsI GCAGTG 2 cut(s) 432, 875
BtsIMutI CAGTG 4 cut(s) 432, 578, 675, 875
Cac8I GCNNGC 3 cut(s) 374, 812, 816
CaiI CAGNNNCTG 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 141
Cfr13I GGNCC 3 cut(s) 139, 248, 765
Csp6I GTAC 2 cut(s) 24, 614
CviAII CATG 2 cut(s) 95, 335
CviQI GTAC 2 cut(s) 24, 614
DdeI CTNAG 8 cut(s) 72, 88, 180, 267, 306, 389, 545, 701
EaeI YGGCCR 1 cut(s) 798
EagI CGGCCG 1 cut(s) 798
Eam1104I CTCTTC 1 cut(s) 750
EarI CTCTTC 1 cut(s) 750
EciI GGCGGA 1 cut(s) 261
Ecl136II GAGCTC 1 cut(s) 760
EclXI CGGCCG 1 cut(s) 798
Eco130I CCWWGG 2 cut(s) 202, 241
Eco24I GRGCYC 1 cut(s) 762
Eco32I GATATC 1 cut(s) 69
Eco47I GGWCC 2 cut(s) 139, 248
Eco52I CGGCCG 1 cut(s) 798
Eco53kI GAGCTC 1 cut(s) 760
Eco57I CTGAAG 2 cut(s) 131, 918
Eco88I CYCGRG 1 cut(s) 761
EcoICRI GAGCTC 1 cut(s) 760
EcoRI GAATTC 2 cut(s) 167, 311
EcoRV GATATC 1 cut(s) 69
EcoT14I CCWWGG 2 cut(s) 202, 241
EcoT38I GRGCYC 1 cut(s) 762
ErhI CCWWGG 2 cut(s) 202, 241
FaeI CATG 2 cut(s) 98, 338
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 2 cut(s) 152, 612
FatI CATG 2 cut(s) 94, 334
FauI CCCGC 3 cut(s) 261, 453, 589
FauNDI CATATG 1 cut(s) 460
Fnu4HI GCNGC 4 cut(s) 77, 80, 573, 653
FriOI GRGCYC 1 cut(s) 762
Fsp4HI GCNGC 4 cut(s) 77, 80, 573, 653
FspBI CTAG 6 cut(s) 21, 27, 47, 215, 242, 807
GluI GCNGC 4 cut(s) 77, 80, 573, 653
HaeIII GGCC 3 cut(s) 128, 767, 800
HapII CCGG 4 cut(s) 142, 752, 836, 881
Hin1I GRCGYC 1 cut(s) 779
Hin1II CATG 2 cut(s) 98, 338
HinfI GANTC 4 cut(s) 277, 467, 772, 872
HpaII CCGG 4 cut(s) 142, 752, 836, 881
Hpy166II GTNNAC 2 cut(s) 320, 856
Hpy188I TCNGA 5 cut(s) 270, 341, 399, 441, 777
Hpy188III TCNNGA 4 cut(s) 137, 215, 281, 931
Hpy8I GTNNAC 2 cut(s) 320, 856
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 5 cut(s) 265, 353, 640, 731, 893
HpyCH4III ACNGT 4 cut(s) 107, 582, 670, 689
HpyCH4IV ACGT 3 cut(s) 507, 616, 779
HpyCH4V TGCA 8 cut(s) 464, 575, 608, 620, 652, 824, 905, 920
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 593, 757
HpyF3I CTNAG 8 cut(s) 72, 88, 180, 267, 306, 389, 545, 701
HpySE526I ACGT 3 cut(s) 507, 616, 779
Hsp92I GRCGYC 1 cut(s) 779
Hsp92II CATG 2 cut(s) 98, 338
LguI GCTCTTC 1 cut(s) 750
LmnI GCTCC 2 cut(s) 103, 924
LpnPI CCDG 8 cut(s) 75, 142, 155, 765, 796, 849, 894, 909
Lsp1109I GCAGC 4 cut(s) 63, 66, 559, 664
LweI GCATC 3 cut(s) 584, 595, 750
MaeI CTAG 6 cut(s) 21, 27, 47, 215, 242, 807
MaeII ACGT 3 cut(s) 507, 616, 779
MaeIII GTNAC 1 cut(s) 785
MboII GAAGA 2 cut(s) 32, 767
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 2 cut(s) 268, 762
MluCI AATT 8 cut(s) 115, 167, 232, 311, 345, 400, 534, 915
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 1 cut(s) 490
MseI TTAA 1 cut(s) 236
MslI CAYNNNNRTG 1 cut(s) 746
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 4 cut(s) 142, 752, 836, 881
MspR9I CCNGG 1 cut(s) 882
Mva1269I GAATGC 1 cut(s) 22
MwoI GCNNNNNNNGC 3 cut(s) 272, 593, 757
NciI CCSGG 1 cut(s) 882
NdeI CATATG 1 cut(s) 460
NlaIII CATG 2 cut(s) 98, 338
NlaIV GGNNCC 3 cut(s) 140, 250, 766
NmeAIII GCCGAG 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 750
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 3 cut(s) 277, 772, 872
Pfl23II CGTACG 1 cut(s) 613
PkrI GCNGC 4 cut(s) 78, 81, 574, 654
Ple19I CGATCG 1 cut(s) 261
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
Ppu21I YACGTR 1 cut(s) 617
Psp124BI GAGCTC 1 cut(s) 762
PspLI CGTACG 1 cut(s) 613
PspN4I GGNNCC 3 cut(s) 140, 250, 766
PspPI GGNCC 3 cut(s) 139, 248, 765
PstNI CAGNNNCTG 1 cut(s) 79
PsuI RGATCY 1 cut(s) 385
PvuI CGATCG 1 cut(s) 261
PvuII CAGCTG 1 cut(s) 76
RsaI GTAC 2 cut(s) 25, 615
RsaNI GTAC 2 cut(s) 24, 614
RseI CAYNNNNRTG 1 cut(s) 746
SacI GAGCTC 1 cut(s) 762
SapI GCTCTTC 1 cut(s) 750
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 4 cut(s) 77, 80, 573, 653
Sau96I GGNCC 3 cut(s) 139, 248, 765
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 1 cut(s) 882
SduI GDGCHC 2 cut(s) 268, 762
SfaNI GCATC 3 cut(s) 584, 595, 750
SinI GGWCC 2 cut(s) 139, 248
SmiMI CAYNNNNRTG 1 cut(s) 746
SmlI CTYRAG 1 cut(s) 859
SmoI CTYRAG 1 cut(s) 859
SpeI ACTAGT 1 cut(s) 26
Sse9I AATT 8 cut(s) 115, 167, 232, 311, 345, 400, 534, 915
SsiI CCGC 6 cut(s) 246, 254, 446, 587, 596, 833
SspMI CTAG 6 cut(s) 21, 27, 47, 215, 242, 807
SstI GAGCTC 1 cut(s) 762
StyD4I CCNGG 1 cut(s) 880
StyI CCWWGG 2 cut(s) 202, 241
TaaI ACNGT 4 cut(s) 107, 582, 670, 689
TaiI ACGT 3 cut(s) 510, 619, 782
TaqI TCGA 2 cut(s) 282, 421
TasI AATT 8 cut(s) 115, 167, 232, 311, 345, 400, 534, 915
TatI WGTACW 1 cut(s) 23
TfiI GAWTC 3 cut(s) 277, 772, 872
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TscAI CASTG 4 cut(s) 432, 585, 675, 882
TseI GCWGC 4 cut(s) 76, 79, 572, 652
TspDTI ATGAA 2 cut(s) 750, 885
TspRI CASTG 4 cut(s) 432, 585, 675, 882
VpaK11BI GGWCC 2 cut(s) 139, 248
XapI RAATTY 4 cut(s) 167, 232, 311, 400
XbaI TCTAGA 1 cut(s) 214
XmaJI CCTAGG 1 cut(s) 241
XspI CTAG 6 cut(s) 21, 27, 47, 215, 242, 807
ZraI GACGTC 1 cut(s) 780
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.