Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001867

Physical Location & Seq

Genomic Coordinates Forward (+)

22636195 .. 22637838

Gene Structure 1644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAAAATAGCAATAATTACCAGATTAGGAGGATTTCCAAGGCCTCAGTTGGACCTGAGCCGTGAGAATTTCGCCCGACTAATGGATGCAGCGGTGGGTTACCCGTTGAACCCTCCATTTAACATCTATGCAAGTTCAATCAATTTTCTCTTAGGATCTTATTGCATCCCTCATGTGGGACTAAATGGTTATGTTGGCACCATTCCAAACCTCACAAGGCCTGATAACCGCAGATTGGTTGCGTCACTTATGGGGGTTGAGGCTGGACAAGATGCAGTGATTCGGGCGTTACTGTATAAGTTCGCTTTTTTGAAGGTGTATCCGTACGAGCTCACGGTGGCTGATTTCACAAACCACATTTCCTGGCTGAGGAACGAGCTGGGGAGGTGTGGCAACAAAGATGAAGGAATCATAGTACCCGAGACGTTAGGGGCGGAGAACCGGACGTGGAGTAACGTCCTTTCGGCAGATTGGGAGTCACTGACGTATGCAAGGACGCAGCCGGAGATCTTGAGGATTGTGTATGCAACTGGTAATGAGTCCTGGCCCGGAGGATTTTTTCCCAGAGGTGCAAATGGCAACATTGCCATGCGTTTCCTTAAAAACAATATTATTGCAGATCAGAATAATTTACAAGAGGCAACTAAGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

218

Amino Acids

24.23

Weight (kDa)

8.55

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62730 AT3G62730
fragaria_vesca	FvH4_2g21640 FvH4_2g25280 FvH4_2g25280 FvH4_2g25300 FvH4_2g25320
malus_domestica	MD03G1284600.v1.1 MD11G1014700.v1.1
prunus_persica	Prupe.8G257600_v2.0.a1 Prupe.8G257700_v2.0.a1
pyrus_communis	pycom03g22540 pycom03g22550
rosa_chinensis	RchiOBHm_Chr6g0252921 RchiOBHm_Chr6g0293411 RchiOBHm_Chr6g0293441
rosa_laevigata	RLG00000011946 RLG00000011948 RLG00000015048 RLG00000032763
rosa_multiflora	Rmu_sc0002560.1_g000001 Rmu_sc0006269.1_g000018 Rmu_sc0006269.1_g000021 Rmu_sc0016103.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174150 Rroxscaffold_7G00174170 Rroxscaffold_7G00212280 Rroxscaffold_7G00212290
rosa_rugosa	Rorug05G0541500 Rorug06G0235500 Rorug06G0235700
rosa_samantha	Rh6AG055800 Rh6AG348200 Rh6AG348300 Rh6AG348400 Rh6BG050100 Rh6BG355900 Rh6BG356000 Rh6CG048500 Rh6CG362200 Rh6DG044100 Rh6DG349100 Rh6DG349600
rosa_wichuraiana	Rw6G005050 Rw6G030300 Rw6G030310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AciI	CCGC	3 cut(s)	92, 229, 434
AclWI	GGATC	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	67
AfaI	GTAC	2 cut(s)	326, 417
AfiI	CCNNNNNNNGG	5 cut(s)	82, 175, 176, 235, 369
AgsI	TTSAA	3 cut(s)	109, 138, 313
AjiI	CACGTC	1 cut(s)	447
AjnI	CCWGG	2 cut(s)	362, 542
AluBI	AGCT	2 cut(s)	331, 379
AluI	AGCT	2 cut(s)	331, 379
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	163
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	3 cut(s)	41, 218, 545
ApeKI	GCWGC	2 cut(s)	89, 499
ApoI	RAATTY	1 cut(s)	67
AspS9I	GGNCC	2 cut(s)	52, 546
AsuC2I	CCSGG	1 cut(s)	549
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	333
BbvCI	CCTCAGC	1 cut(s)	368
BbvI	GCAGC	2 cut(s)	101, 511
BceAI	ACGGC	1 cut(s)	45
BciT130I	CCWGG	2 cut(s)	364, 544
BciVI	GTATCC	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	549
BcoDI	GTCTC	1 cut(s)	416
BfuI	GTATCC	1 cut(s)	330
BglII	AGATCT	1 cut(s)	507
BisI	GCNGC	2 cut(s)	90, 500
BlsI	GCNGC	2 cut(s)	91, 501
Bme1390I	CCNGG	3 cut(s)	364, 544, 549
Bme18I	GGWCC	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	419
BmgBI	CACGTC	1 cut(s)	447
BmgT120I	GGNCC	2 cut(s)	52, 546
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	3 cut(s)	364, 544, 549
BmsI	GCATC	3 cut(s)	76, 174, 262
Bpu10I	CCTNAGC	2 cut(s)	56, 368
BpuEI	CTTGAG	1 cut(s)	532
BpuMI	CCSGG	1 cut(s)	549
BsaJI	CCNNGG	1 cut(s)	38
BsaWI	WCCGGW	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 175, 176, 235, 369
Bse1I	ACTGG	1 cut(s)	535
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	2 cut(s)	364, 544
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	91, 165
BseLI	CCNNNNNNNGG	5 cut(s)	82, 175, 176, 235, 369
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	3 cut(s)	47, 59, 359
BseNI	ACTGG	1 cut(s)	535
BseXI	GCAGC	2 cut(s)	101, 511
BseYI	CCCAGC	1 cut(s)	379
BshFI	GGCC	3 cut(s)	43, 220, 547
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	3 cut(s)	442, 503, 549
BsiWI	CGTACG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	5 cut(s)	82, 175, 176, 235, 369
BsmAI	GTCTC	1 cut(s)	416
BsmBI	CGTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	43, 220, 547
BsoBI	CYCGRG	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	155, 507, 619
BspACI	CCGC	3 cut(s)	92, 229, 434
BspANI	GGCC	3 cut(s)	43, 220, 547
BspCNI	CTCAG	3 cut(s)	48, 58, 360
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	535
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	3 cut(s)	155, 507, 619
BssT1I	CCWWGG	1 cut(s)	38
Bst2UI	CCWGG	2 cut(s)	364, 544
Bst4CI	ACNGT	2 cut(s)	294, 337
BstDEI	CTNAG	5 cut(s)	45, 56, 151, 368, 645
BstEII	GGTNACC	1 cut(s)	98
BstENI	CCTNNNNNAGG	1 cut(s)	367
BstF5I	GGATG	2 cut(s)	91, 165
BstKTI	GATC	3 cut(s)	158, 510, 622
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	3 cut(s)	155, 507, 619
BstNI	CCWGG	2 cut(s)	364, 544
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	362, 542, 547
BstV1I	GCAGC	2 cut(s)	101, 511
BstX2I	RGATCY	2 cut(s)	155, 507
BstYI	RGATCY	2 cut(s)	155, 507
BsuI	GTATCC	1 cut(s)	330
BsuRI	GGCC	3 cut(s)	43, 220, 547
BtrI	CACGTC	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	91, 165
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	3 cut(s)	282, 479, 649
Cfr13I	GGNCC	2 cut(s)	52, 546
CseI	GACGC	2 cut(s)	231, 505
Csp6I	GTAC	2 cut(s)	325, 416
CviAII	CATG	2 cut(s)	173, 589
CviQI	GTAC	2 cut(s)	325, 416
DdeI	CTNAG	5 cut(s)	45, 56, 151, 368, 645
DpnI	GATC	3 cut(s)	157, 509, 621
DpnII	GATC	3 cut(s)	155, 507, 619
EciI	GGCGGA	1 cut(s)	449
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	38
Eco147I	AGGCCT	2 cut(s)	43, 220
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	331
Eco88I	CYCGRG	1 cut(s)	419
Eco91I	GGTNACC	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	331
EcoNI	CCTNNNNNAGG	1 cut(s)	367
EcoO65I	GGTNACC	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	362, 542
EcoT14I	CCWWGG	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	38
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	2 cut(s)	176, 592
FaiI	YATR	9 cut(s)	129, 174, 192, 251, 297, 413, 489, 525, 590
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	2 cut(s)	172, 588
Fnu4HI	GCNGC	2 cut(s)	90, 500
FokI	GGATG	2 cut(s)	98, 152
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	2 cut(s)	90, 500
GluI	GCNGC	2 cut(s)	90, 500
GsaI	CCCAGC	1 cut(s)	383
HaeIII	GGCC	3 cut(s)	43, 220, 547
HapII	CCGG	3 cut(s)	442, 503, 549
HgaI	GACGC	2 cut(s)	231, 505
Hin1II	CATG	2 cut(s)	176, 592
HinfI	GANTC	4 cut(s)	280, 408, 476, 539
HpaII	CCGG	3 cut(s)	442, 503, 549
Hpy188I	TCNGA	1 cut(s)	624
Hpy188III	TCNNGA	1 cut(s)	511
HpyAV	CCTTC	2 cut(s)	307, 398
HpyCH4III	ACNGT	2 cut(s)	294, 337
HpyCH4IV	ACGT	4 cut(s)	425, 446, 456, 485
HpyCH4V	TGCA	8 cut(s)	89, 131, 165, 275, 491, 527, 572, 617
HpyF3I	CTNAG	5 cut(s)	45, 56, 151, 368, 645
HpySE526I	ACGT	4 cut(s)	425, 446, 456, 485
Hsp92II	CATG	2 cut(s)	176, 592
Kzo9I	GATC	3 cut(s)	155, 507, 619
Lsp1109I	GCAGC	2 cut(s)	101, 511
LweI	GCATC	3 cut(s)	76, 174, 262
MaeII	ACGT	4 cut(s)	425, 446, 456, 485
MaeIII	GTNAC	5 cut(s)	98, 243, 288, 452, 477
MalI	GATC	3 cut(s)	157, 509, 621
MboI	GATC	3 cut(s)	155, 507, 619
MflI	RGATCY	2 cut(s)	155, 507
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	4 cut(s)	15, 67, 142, 628
MlyI	GAGTC	2 cut(s)	485, 548
MmeI	TCCRAC	1 cut(s)	30
MseI	TTAA	2 cut(s)	120, 600
MslI	CAYNNNNRTG	1 cut(s)	587
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	3 cut(s)	442, 503, 549
MspR9I	CCNGG	3 cut(s)	364, 544, 549
MvaI	CCWGG	2 cut(s)	364, 544
NciI	CCSGG	1 cut(s)	549
NdeII	GATC	3 cut(s)	155, 507, 619
NlaIII	CATG	2 cut(s)	176, 592
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	243, 477
PceI	AGGCCT	2 cut(s)	43, 220
PfeI	GAWTC	2 cut(s)	280, 408
Pfl23II	CGTACG	1 cut(s)	324
PkrI	GCNGC	2 cut(s)	91, 501
PleI	GAGTC	2 cut(s)	484, 547
PpsI	GAGTC	2 cut(s)	484, 547
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	2 cut(s)	362, 542
PspEI	GGTNACC	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	379
PspGI	CCWGG	2 cut(s)	362, 542
PspLI	CGTACG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	52, 546
PsuI	RGATCY	2 cut(s)	155, 507
RsaI	GTAC	2 cut(s)	326, 417
RsaNI	GTAC	2 cut(s)	325, 416
RseI	CAYNNNNRTG	1 cut(s)	587
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	120, 600
SatI	GCNGC	2 cut(s)	90, 500
Sau3AI	GATC	3 cut(s)	155, 507, 619
Sau96I	GGNCC	2 cut(s)	52, 546
SchI	GAGTC	2 cut(s)	485, 548
ScrFI	CCNGG	3 cut(s)	364, 544, 549
SduI	GDGCHC	1 cut(s)	333
SfaNI	GCATC	3 cut(s)	76, 174, 262
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	4 cut(s)	15, 67, 142, 628
SseBI	AGGCCT	2 cut(s)	43, 220
SsiI	CCGC	3 cut(s)	92, 229, 434
SspI	AATATT	1 cut(s)	610
SstI	GAGCTC	1 cut(s)	333
StuI	AGGCCT	2 cut(s)	43, 220
StyD4I	CCNGG	3 cut(s)	362, 542, 547
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	2 cut(s)	294, 337
TaiI	ACGT	4 cut(s)	428, 449, 459, 488
TasI	AATT	4 cut(s)	15, 67, 142, 628
TfiI	GAWTC	2 cut(s)	280, 408
Tru1I	TTAA	2 cut(s)	120, 600
Tru9I	TTAA	2 cut(s)	120, 600
TscAI	CASTG	2 cut(s)	282, 486
TseFI	GTSAC	2 cut(s)	243, 477
TseI	GCWGC	2 cut(s)	89, 499
Tsp45I	GTSAC	2 cut(s)	243, 477
TspDTI	ATGAA	2 cut(s)	17, 417
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	2 cut(s)	282, 486
VpaK11BI	GGWCC	1 cut(s)	52
XagI	CCTNNNNNAGG	1 cut(s)	367
XapI	RAATTY	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.