pycom03g22550

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0001867
Physical Location & Seq
Forward (+)
22646556 .. 22647713
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g22550.1

Sequence Viewer

Length: 921 bp
ATGAAATTAGCAGTAATGGCTCCTACTTCTACTGCATCTTATTTCAGTGCTGTCTTTGTTTTCCTTGTTGCTTTTAATTTCCTCAGCTTTCATGTCATGACTGCTTCTGGTCATGCAGCCAACGACAGTGACTTCCTAGAGTTTATGTTGAACTTGGAATATTTGGACGGTGAGTTTTACTCATACGGTGTTTTTGGCAATGACCTCGATAGTATCTCCCCAAACTTGTCCCAAGGGGGCCCGCGTCCTATTGGTGGTCAGAAGGCCAATCTCGAACCCCTTGTGACTGAAATAATCAAGGAATTTGCTTATGAAGAAGTTGGTCATATCAGGTATAGAGCAACAGGTGGGTTCCCAAGGCCTCTTATAAACCTCAGCAGTGCGCTTTTCTCACTATTTGTTGACCTAGCACTGGGTTACCCATTGCTCCCTCGATTTGACCCCTACGCAAACACAGTCAATTATCTTATAGCAGCGCAAGCACTGAATTATGATGGTCTAGTGGGTTATGTTTACATCAATGCAAACCTCAACGCCGATGCTGCTAACAGATTGGGTGCATCGCTTTTGGGTATGAAGGCTGGACAAAATGCAGTGGTACGTGCATTACTGTATGAGAGAGCGAATCAGACGGTGGCTCCGTACAATTTCACGGTGGCTTATATCGTCAGCCGAATTGCTGAATTGGGGAACAAGGTGACCAGGGGTGGCCTCGAAGAAGGCATCATAGTACCCATCACGCTTGGGGCTGAGAATCGAACGGTCACGAATGTCCTATCAGCGGACACGAATTCGCTGTCCTATGCAAGGACGCCACAAGAGATCTTGAGGATTCTGTATGGAACAGGAAATGAATATGTGCCTGGCGGCTTTTTCCCTGCAAAAGCAAATGGCCAACTTGCAAGAACTCTTGTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

307

Amino Acids

33.18

Weight (kDa)

5.28

Isoelectric Point (pI)

23.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 41 - 206 3.2e-22 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 368
AccII CGCG 1 cut(s) 244
AciI CCGC 3 cut(s) 242, 782, 867
AcoI YGGCCR 1 cut(s) 892
AcsI RAATTY 2 cut(s) 302, 790
AcyI GRCGYC 1 cut(s) 812
AfaI GTAC 3 cut(s) 600, 644, 732
AfiI CCNNNNNNNGG 4 cut(s) 254, 412, 781, 807
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 2 cut(s) 701, 862
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
AoxI GGCC 5 cut(s) 238, 264, 359, 709, 892
ApaI GGGCCC 1 cut(s) 242
ApeKI GCWGC 3 cut(s) 116, 473, 542
ApoI RAATTY 2 cut(s) 302, 790
ArsI GACNNNNNNTTYG 2 cut(s) 782, 814
AspLEI GCGC 2 cut(s) 385, 478
AspS9I GGNCC 2 cut(s) 238, 239
AsuHPI GGTGA 2 cut(s) 182, 709
BaeGI GKGCMC 1 cut(s) 242
BalI TGGCCA 1 cut(s) 894
BanII GRGCYC 1 cut(s) 242
BbvCI CCTCAGC 2 cut(s) 83, 374
BbvI GCAGC 3 cut(s) 128, 485, 529
BccI CCATC 2 cut(s) 488, 743
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 2 cut(s) 703, 864
BfaI CTAG 3 cut(s) 137, 407, 500
BglII AGATCT 1 cut(s) 822
BisI GCNGC 4 cut(s) 117, 474, 543, 868
BlsI GCNGC 4 cut(s) 118, 475, 544, 869
Bme1390I CCNGG 2 cut(s) 703, 864
BmgT120I GGNCC 2 cut(s) 238, 239
BmiI GGNNCC 5 cut(s) 21, 239, 240, 353, 639
BmrFI CCNGG 2 cut(s) 703, 864
BmrI ACTGGG 1 cut(s) 422
BmsI GCATC 4 cut(s) 44, 529, 569, 732
BmuI ACTGGG 1 cut(s) 422
BplI GAGNNNNNCTC 2 cut(s) 164, 196
Bpu10I CCTNAGC 2 cut(s) 83, 374
BpuEI CTTGAG 1 cut(s) 847
BsaAI YACGTR 1 cut(s) 602
BsaHI GRCGYC 1 cut(s) 812
BsaJI CCNNGG 3 cut(s) 232, 356, 702
BsaXI ACNNNNNCTCC 2 cut(s) 622, 652
Bsc4I CCNNNNNNNGG 4 cut(s) 254, 412, 781, 807
Bse1I ACTGG 1 cut(s) 417
Bse3DI GCAATG 2 cut(s) 205, 422
BseBI CCWGG 2 cut(s) 703, 864
BseDI CCNNGG 3 cut(s) 232, 356, 702
BseLI CCNNNNNNNGG 4 cut(s) 254, 412, 781, 807
BseMI GCAATG 2 cut(s) 205, 422
BseMII CTCAG 3 cut(s) 97, 388, 741
BseNI ACTGG 1 cut(s) 417
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 3 cut(s) 128, 485, 529
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 5 cut(s) 240, 266, 361, 711, 894
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 4 cut(s) 254, 412, 781, 807
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 5 cut(s) 240, 266, 361, 711, 894
Bsp120I GGGCCC 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 822
BspACI CCGC 3 cut(s) 242, 782, 867
BspANI GGCC 5 cut(s) 240, 266, 361, 711, 894
BspCNI CTCAG 3 cut(s) 96, 387, 742
BspFNI CGCG 1 cut(s) 244
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 5 cut(s) 21, 239, 240, 353, 639
BsrDI GCAATG 2 cut(s) 205, 422
BsrI ACTGG 1 cut(s) 417
BssECI CCNNGG 3 cut(s) 232, 356, 702
BssMI GATC 1 cut(s) 822
BssNI GRCGYC 1 cut(s) 812
BssT1I CCWWGG 2 cut(s) 232, 356
Bst2UI CCWGG 2 cut(s) 703, 864
Bst4CI ACNGT 8 cut(s) 128, 170, 188, 457, 612, 634, 655, 763
BstACI GRCGYC 1 cut(s) 812
BstBAI YACGTR 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 242, 480
BstDEI CTNAG 3 cut(s) 83, 374, 750
BstEII GGTNACC 2 cut(s) 416, 697
BstENI CCTNNNNNAGG 1 cut(s) 805
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 2 cut(s) 385, 478
BstKTI GATC 1 cut(s) 825
BstMBI GATC 1 cut(s) 822
BstMWI GCNNNNNNNGC 3 cut(s) 17, 479, 542
BstNI CCWGG 2 cut(s) 703, 864
BstPI GGTNACC 2 cut(s) 416, 697
BstSCI CCNGG 2 cut(s) 701, 862
BstSLI GKGCMC 1 cut(s) 242
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 3 cut(s) 128, 485, 529
BstX2I RGATCY 1 cut(s) 822
BstYI RGATCY 1 cut(s) 822
BsuRI GGCC 5 cut(s) 240, 266, 361, 711, 894
BtgZI GCGATG 1 cut(s) 546
BtsI GCAGTG 2 cut(s) 385, 600
BtsIMutI CAGTG 6 cut(s) 52, 133, 385, 410, 482, 600
Cac8I GCNNGC 2 cut(s) 242, 480
CciI TCATGA 1 cut(s) 96
CfoI GCGC 2 cut(s) 385, 478
Cfr13I GGNCC 2 cut(s) 238, 239
CseI GACGC 2 cut(s) 233, 820
Csp6I GTAC 3 cut(s) 599, 643, 731
CviAII CATG 3 cut(s) 92, 97, 113
CviQI GTAC 3 cut(s) 599, 643, 731
DdeI CTNAG 3 cut(s) 83, 374, 750
DpnI GATC 1 cut(s) 824
DpnII GATC 1 cut(s) 822
EaeI YGGCCR 1 cut(s) 892
Eco130I CCWWGG 2 cut(s) 232, 356
Eco147I AGGCCT 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 242
Eco91I GGTNACC 2 cut(s) 416, 697
EcoNI CCTNNNNNAGG 1 cut(s) 805
EcoO109I RGGNCCY 1 cut(s) 238
EcoO65I GGTNACC 2 cut(s) 416, 697
EcoRI GAATTC 1 cut(s) 790
EcoRII CCWGG 2 cut(s) 701, 862
EcoT14I CCWWGG 2 cut(s) 232, 356
EcoT38I GRGCYC 1 cut(s) 242
ErhI CCWWGG 2 cut(s) 232, 356
FaeI CATG 3 cut(s) 95, 100, 116
FaqI GGGAC 1 cut(s) 214
FatI CATG 3 cut(s) 91, 96, 112
FauI CCCGC 1 cut(s) 249
Fnu4HI GCNGC 4 cut(s) 117, 474, 543, 868
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 4 cut(s) 117, 474, 543, 868
FspBI CTAG 3 cut(s) 137, 407, 500
GlaI GCGC 2 cut(s) 384, 477
GluI GCNGC 4 cut(s) 117, 474, 543, 868
HaeIII GGCC 5 cut(s) 240, 266, 361, 711, 894
HgaI GACGC 2 cut(s) 233, 820
HhaI GCGC 2 cut(s) 385, 478
Hin1I GRCGYC 1 cut(s) 812
Hin1II CATG 3 cut(s) 95, 100, 116
Hin6I GCGC 2 cut(s) 383, 476
HinP1I GCGC 2 cut(s) 383, 476
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 3 cut(s) 625, 754, 832
HphI GGTGA 2 cut(s) 182, 709
Hpy166II GTNNAC 2 cut(s) 403, 514
Hpy188I TCNGA 2 cut(s) 261, 630
Hpy188III TCNNGA 4 cut(s) 97, 272, 766, 826
Hpy8I GTNNAC 2 cut(s) 403, 514
HpyAV CCTTC 3 cut(s) 256, 571, 713
HpyCH4III ACNGT 8 cut(s) 128, 170, 188, 457, 612, 634, 655, 763
HpyCH4IV ACGT 1 cut(s) 601
HpyCH4V TGCA 9 cut(s) 35, 116, 524, 560, 593, 605, 806, 881, 902
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 479, 542
HpyF3I CTNAG 3 cut(s) 83, 374, 750
HpySE526I ACGT 1 cut(s) 601
Hsp92I GRCGYC 1 cut(s) 812
Hsp92II CATG 3 cut(s) 95, 100, 116
HspAI GCGC 2 cut(s) 383, 476
Kzo9I GATC 1 cut(s) 822
LmnI GCTCC 3 cut(s) 25, 432, 643
Lsp1109I GCAGC 3 cut(s) 128, 485, 529
LweI GCATC 4 cut(s) 44, 529, 569, 732
MaeI CTAG 3 cut(s) 137, 407, 500
MaeII ACGT 1 cut(s) 601
MaeIII GTNAC 5 cut(s) 128, 283, 416, 697, 763
MalI GATC 1 cut(s) 824
MboI GATC 1 cut(s) 822
MboII GAAGA 2 cut(s) 326, 728
MflI RGATCY 1 cut(s) 822
MhlI GDGCHC 1 cut(s) 242
MlsI TGGCCA 1 cut(s) 894
MluCI AATT 9 cut(s) 5, 76, 302, 460, 487, 646, 675, 683, 790
MluNI TGGCCA 1 cut(s) 894
MnlI CCTC 8 cut(s) 92, 215, 372, 383, 441, 539, 722, 822
Mox20I TGGCCA 1 cut(s) 894
MscI TGGCCA 1 cut(s) 894
MseI TTAA 1 cut(s) 75
Msp20I TGGCCA 1 cut(s) 894
MspA1I CMGCKG 1 cut(s) 782
MspR9I CCNGG 2 cut(s) 703, 864
MvaI CCWGG 2 cut(s) 703, 864
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 3 cut(s) 17, 479, 542
NdeII GATC 1 cut(s) 822
NlaIII CATG 3 cut(s) 95, 100, 116
NlaIV GGNNCC 5 cut(s) 21, 239, 240, 353, 639
NmuCI GTSAC 4 cut(s) 128, 283, 697, 763
PagI TCATGA 1 cut(s) 96
PceI AGGCCT 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 638
PfeI GAWTC 3 cut(s) 625, 754, 832
PkrI GCNGC 4 cut(s) 118, 475, 544, 869
Ppu21I YACGTR 1 cut(s) 602
PsiI TTATAA 1 cut(s) 368
Psp6I CCWGG 2 cut(s) 701, 862
PspEI GGTNACC 2 cut(s) 416, 697
PspGI CCWGG 2 cut(s) 701, 862
PspN4I GGNNCC 5 cut(s) 21, 239, 240, 353, 639
PspOMI GGGCCC 1 cut(s) 238
PspPI GGNCC 2 cut(s) 238, 239
PsuI RGATCY 1 cut(s) 822
RsaI GTAC 3 cut(s) 600, 644, 732
RsaNI GTAC 3 cut(s) 599, 643, 731
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 4 cut(s) 117, 474, 543, 868
Sau3AI GATC 1 cut(s) 822
Sau96I GGNCC 2 cut(s) 238, 239
ScrFI CCNGG 2 cut(s) 703, 864
SduI GDGCHC 1 cut(s) 242
SetI ASST 9 cut(s) 89, 207, 335, 349, 375, 408, 531, 604, 699
SfaNI GCATC 4 cut(s) 44, 529, 569, 732
SmlI CTYRAG 1 cut(s) 826
SmoI CTYRAG 1 cut(s) 826
Sse9I AATT 9 cut(s) 5, 76, 302, 460, 487, 646, 675, 683, 790
SseBI AGGCCT 1 cut(s) 361
SsiI CCGC 3 cut(s) 242, 782, 867
SspI AATATT 1 cut(s) 161
SspMI CTAG 3 cut(s) 137, 407, 500
StuI AGGCCT 1 cut(s) 361
StyD4I CCNGG 2 cut(s) 701, 862
StyI CCWWGG 2 cut(s) 232, 356
TaaI ACNGT 8 cut(s) 128, 170, 188, 457, 612, 634, 655, 763
TaiI ACGT 1 cut(s) 604
TaqI TCGA 5 cut(s) 207, 273, 433, 714, 757
TasI AATT 9 cut(s) 5, 76, 302, 460, 487, 646, 675, 683, 790
TauI GCSGC 1 cut(s) 870
TfiI GAWTC 3 cut(s) 625, 754, 832
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 6 cut(s) 52, 133, 385, 417, 489, 600
TseFI GTSAC 4 cut(s) 128, 283, 697, 763
TseI GCWGC 3 cut(s) 116, 473, 542
Tsp45I GTSAC 4 cut(s) 128, 283, 697, 763
TspDTI ATGAA 5 cut(s) 17, 80, 327, 590, 867
TspGWI ACGGA 1 cut(s) 630
TspRI CASTG 6 cut(s) 52, 133, 385, 417, 489, 600
XagI CCTNNNNNAGG 1 cut(s) 805
XapI RAATTY 2 cut(s) 302, 790
XspI CTAG 3 cut(s) 137, 407, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.