Rh6AG348200

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001867
Physical Location & Seq
Forward (+)
54842510 .. 54843099
590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG348200.1

Sequence Viewer

Length: 468 bp
ATGAGTACTAATTCTAATGCCTTTGTTTTTCCTCTTGCTTTCTGTTTAGTTGGGATATCTCAGCTGCTGCTTTGCTCAGGTGATGCTCCCAACTGTGATCCCAATTTGATTGAAGCCAGTGATAGGGACAGGCTCCAATTTGCTTTGAACTTGGAATTCTTGGAGACCGAGTTTTTCTTGTATGCTGCTCTTGGAAAAGGTCTAGATGCTATCAGTCCAAATTTAACCCTAGGCGGCCCCCCTCCGATTGGTGCTCAGAAGGCGAATCTCGAACCTCTTGTTCGTCGTATCATCGAGGAATTCGGTTATCAAGAAGTTGGTCATATCAGATCAATTATTAAAAAAGAAGGAGGGTTTCCCAGGCCTTTGTTAGATGTCAGCCGTCAGAATTTCGCAAAACTAATGGATCGAGCAGTGGGTTTCACTCTGAACCCGCCATTCGATCGATCCATATGCAAACTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

155

Amino Acids

17.06

Weight (kDa)

5.41

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 40 - 132 6.1e-14 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 234, 434
AclWI GGATC 3 cut(s) 92, 414, 441
AcsI RAATTY 4 cut(s) 155, 220, 299, 388
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 123, 248
AgsI TTSAA 2 cut(s) 113, 148
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 3 cut(s) 92, 414, 441
AlwNI CAGNNNCTG 1 cut(s) 67
AoxI GGCC 2 cut(s) 235, 362
ApeKI GCWGC 3 cut(s) 64, 67, 185
ApoI RAATTY 4 cut(s) 155, 220, 299, 388
AspA2I CCTAGG 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 92
AvrII CCTAGG 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 3 cut(s) 51, 54, 172
BceAI ACGGC 1 cut(s) 366
BcgI CGANNNNNNTGC 1 cut(s) 435
BciT130I CCWGG 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 2 cut(s) 203, 230
BisI GCNGC 4 cut(s) 65, 68, 186, 235
BlnI CCTAGG 1 cut(s) 229
BlsI GCNGC 4 cut(s) 66, 69, 187, 236
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 134, 238
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 2 cut(s) 73, 196
Bpu10I CCTNAGC 1 cut(s) 76
Bsa29I ATCGAT 1 cut(s) 445
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 229, 359
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 248
Bse1I ACTGG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 361
BseCI ATCGAT 1 cut(s) 445
BseDI CCNNGG 2 cut(s) 229, 359
BseLI CCNNNNNNNGG 2 cut(s) 123, 248
BseMII CTCAG 3 cut(s) 74, 90, 269
BseNI ACTGG 1 cut(s) 117
BseXI GCAGC 3 cut(s) 51, 54, 172
Bsh1285I CGRYCG 1 cut(s) 445
BshFI GGCC 2 cut(s) 237, 364
BshVI ATCGAT 1 cut(s) 445
BsiEI CGRYCG 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 256
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 123, 248
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 2 cut(s) 237, 364
Bso31I GGTCTC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 5 cut(s) 97, 329, 406, 442, 446
BspACI CCGC 2 cut(s) 234, 434
BspANI GGCC 2 cut(s) 237, 364
BspCNI CTCAG 3 cut(s) 73, 89, 268
BspDI ATCGAT 1 cut(s) 445
BspLI GGNNCC 2 cut(s) 134, 238
BspPI GGATC 3 cut(s) 92, 414, 441
BspTNI GGTCTC 1 cut(s) 158
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 2 cut(s) 229, 359
BssMI GATC 5 cut(s) 97, 329, 406, 442, 446
BssT1I CCWWGG 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 95
BstDEI CTNAG 3 cut(s) 60, 76, 255
BstKTI GATC 5 cut(s) 100, 332, 409, 445, 449
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 5 cut(s) 97, 329, 406, 442, 446
BstMCI CGRYCG 1 cut(s) 445
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 359
BstV1I GCAGC 3 cut(s) 51, 54, 172
Bsu15I ATCGAT 1 cut(s) 445
BsuRI GGCC 2 cut(s) 237, 364
BsuTUI ATCGAT 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 2 cut(s) 124, 420
CaiI CAGNNNCTG 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 236
ClaI ATCGAT 1 cut(s) 445
Csp6I GTAC 1 cut(s) 6
CviJI RGCY 6 cut(s) 64, 116, 133, 237, 364, 381
CviKI_1 RGCY 6 cut(s) 64, 116, 133, 237, 364, 381
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 3 cut(s) 60, 76, 255
DpnI GATC 5 cut(s) 99, 331, 408, 444, 448
DpnII GATC 5 cut(s) 97, 329, 406, 442, 446
Eco130I CCWWGG 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 364
Eco31I GGTCTC 1 cut(s) 158
Eco32I GATATC 1 cut(s) 57
EcoRI GAATTC 2 cut(s) 155, 299
EcoRII CCWGG 1 cut(s) 359
EcoRV GATATC 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 229
FaiI YATR 4 cut(s) 183, 324, 452, 454
FaqI GGGAC 1 cut(s) 140
FauI CCCGC 1 cut(s) 441
FauNDI CATATG 1 cut(s) 452
Fnu4HI GCNGC 4 cut(s) 65, 68, 186, 235
Fsp4HI GCNGC 4 cut(s) 65, 68, 186, 235
FspBI CTAG 2 cut(s) 203, 230
GluI GCNGC 4 cut(s) 65, 68, 186, 235
HaeIII GGCC 2 cut(s) 237, 364
HinfI GANTC 1 cut(s) 265
HphI GGTGA 1 cut(s) 92
Hpy188I TCNGA 5 cut(s) 246, 258, 329, 387, 429
Hpy188III TCNNGA 3 cut(s) 203, 269, 311
Hpy99I CGWCG 1 cut(s) 288
HpyAV CCTTC 2 cut(s) 253, 341
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 456
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 3 cut(s) 60, 76, 255
Kzo9I GATC 5 cut(s) 97, 329, 406, 442, 446
LmnI GCTCC 2 cut(s) 91, 138
LpnPI CCDG 5 cut(s) 63, 115, 130, 346, 373
Lsp1109I GCAGC 3 cut(s) 51, 54, 172
LweI GCATC 2 cut(s) 73, 196
MaeI CTAG 2 cut(s) 203, 230
MalI GATC 5 cut(s) 99, 331, 408, 444, 448
MboI GATC 5 cut(s) 97, 329, 406, 442, 446
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 8 cut(s) 10, 103, 137, 155, 220, 299, 333, 388
MnlI CCTC 5 cut(s) 42, 252, 285, 289, 344
MseI TTAA 3 cut(s) 224, 339, 466
MspA1I CMGCKG 1 cut(s) 64
MspR9I CCNGG 1 cut(s) 361
MvaI CCWGG 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeI CATATG 1 cut(s) 452
NdeII GATC 5 cut(s) 97, 329, 406, 442, 446
NlaIV GGNNCC 2 cut(s) 134, 238
PceI AGGCCT 1 cut(s) 364
PfeI GAWTC 1 cut(s) 265
PkrI GCNGC 4 cut(s) 66, 69, 187, 236
Ple19I CGATCG 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 359
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 2 cut(s) 134, 238
PspPI GGNCC 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 67
PvuI CGATCG 1 cut(s) 445
PvuII CAGCTG 1 cut(s) 64
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SaqAI TTAA 3 cut(s) 224, 339, 466
SatI GCNGC 4 cut(s) 65, 68, 186, 235
Sau3AI GATC 5 cut(s) 97, 329, 406, 442, 446
Sau96I GGNCC 1 cut(s) 236
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 1 cut(s) 256
SetI ASST 4 cut(s) 66, 82, 202, 277
SfaNI GCATC 2 cut(s) 73, 196
Sse9I AATT 8 cut(s) 10, 103, 137, 155, 220, 299, 333, 388
SseBI AGGCCT 1 cut(s) 364
SsiI CCGC 2 cut(s) 234, 434
SspMI CTAG 2 cut(s) 203, 230
StuI AGGCCT 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 359
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 5 cut(s) 270, 294, 409, 441, 445
TaqII GACCGA 1 cut(s) 182
TasI AATT 8 cut(s) 10, 103, 137, 155, 220, 299, 333, 388
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 3 cut(s) 224, 339, 466
Tru9I TTAA 3 cut(s) 224, 339, 466
TscAI CASTG 2 cut(s) 124, 420
TseI GCWGC 3 cut(s) 64, 67, 185
TspRI CASTG 2 cut(s) 124, 420
XapI RAATTY 4 cut(s) 155, 220, 299, 388
XbaI TCTAGA 1 cut(s) 202
XmaJI CCTAGG 1 cut(s) 229
XspI CTAG 2 cut(s) 203, 230
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.