Rroxscaffold_7G00212290

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001867
Physical Location & Seq
Reverse (-)
62694121 .. 62695015
895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212290.1

Sequence Viewer

Length: 438 bp
ATGGCTATGTCAGCACCCTTCCAAGCCTTAACAGCACTATTTCTCGCAGCTTGGTTGCAAAACTCTTGGGAATTGAAAGGTGGACAAGATGCAGCGGTACGTGCCTTATTATATGAGAGAGCAAACGAGAGGGTGGTTCCATACAATTTCACGGTGGCTGAATTAACCAACCTTATCTCTGCAAAACGGAACTTCGTCGGTGGGTGTGGCAACAAAGATGAAGGCATCATACTGCTTAACAAGACGCTCGGAGCAGAAAATCAGACAACCAGCAATGTTCTATCCGCTGATGCAAATTCGCTTGCCTACGCGAGAACCCCGGCTGAGATCTTGAGGATTGTCTATGGAAGTTTCAATGAATCTGTGCCGGGCGGGTTTTACCCTAAAGGAGCTAATGGAGTTATTGCAAAGAGTTACCTTAACAGGATTCCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

145

Amino Acids

15.64

Weight (kDa)

8.76

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 311
AciI CCGC 3 cut(s) 95, 285, 372
AcsI RAATTY 1 cut(s) 295
AfaI GTAC 1 cut(s) 99
AgsI TTSAA 2 cut(s) 76, 355
AluBI AGCT 2 cut(s) 50, 392
AluI AGCT 2 cut(s) 50, 392
ApeKI GCWGC 2 cut(s) 47, 92
ApoI RAATTY 1 cut(s) 295
AsuC2I CCSGG 2 cut(s) 320, 369
BarI GAAGNNNNNNTAC 2 cut(s) 213, 245
BbvI GCAGC 2 cut(s) 59, 104
BcnI CCSGG 2 cut(s) 320, 369
BglII AGATCT 1 cut(s) 327
BisI GCNGC 2 cut(s) 48, 93
BlsI GCNGC 2 cut(s) 49, 94
Bme1390I CCNGG 2 cut(s) 320, 369
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 2 cut(s) 320, 369
BmsI GCATC 3 cut(s) 79, 234, 280
BpuEI CTTGAG 1 cut(s) 352
BpuMI CCSGG 2 cut(s) 320, 369
BsaAI YACGTR 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 318
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 315
BseXI GCAGC 2 cut(s) 59, 104
Bsh1236I CGCG 1 cut(s) 311
BsiSI CCGG 2 cut(s) 320, 368
Bsp143I GATC 1 cut(s) 327
BspACI CCGC 3 cut(s) 95, 285, 372
BspCNI CTCAG 1 cut(s) 316
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 154
BstBAI YACGTR 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 324
BstFNI CGCG 1 cut(s) 311
BstKTI GATC 1 cut(s) 330
BstMBI GATC 1 cut(s) 327
BstMWI GCNNNNNNNGC 3 cut(s) 11, 32, 101
BstSCI CCNGG 2 cut(s) 318, 367
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 2 cut(s) 59, 104
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 303
CseI GACGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 98
CviJI RGCY 6 cut(s) 5, 26, 50, 158, 323, 392
CviKI_1 RGCY 6 cut(s) 5, 26, 50, 158, 323, 392
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 1 cut(s) 324
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
FaiI YATR 6 cut(s) 8, 112, 114, 142, 230, 345
FauI CCCGC 1 cut(s) 365
Fnu4HI GCNGC 2 cut(s) 48, 93
Fsp4HI GCNGC 2 cut(s) 48, 93
GluI GCNGC 2 cut(s) 48, 93
HapII CCGG 2 cut(s) 320, 368
HgaI GACGC 1 cut(s) 253
HinfI GANTC 2 cut(s) 359, 427
HpaII CCGG 2 cut(s) 320, 368
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 2 cut(s) 251, 264
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 1 cut(s) 83
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 2 cut(s) 28, 215
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 5 cut(s) 58, 92, 182, 293, 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 32, 101
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 100
Kzo9I GATC 1 cut(s) 327
LmnI GCTCC 2 cut(s) 251, 389
LpnPI CCDG 4 cut(s) 283, 333, 381, 409
Lsp1109I GCAGC 2 cut(s) 59, 104
LweI GCATC 3 cut(s) 79, 234, 280
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 413
MalI GATC 1 cut(s) 329
MboI GATC 1 cut(s) 327
MflI RGATCY 1 cut(s) 327
MluCI AATT 5 cut(s) 71, 145, 161, 295, 433
MnlI CCTC 2 cut(s) 123, 327
MseI TTAA 4 cut(s) 29, 164, 237, 420
MspA1I CMGCKG 2 cut(s) 95, 287
MspI CCGG 2 cut(s) 320, 368
MspR9I CCNGG 2 cut(s) 320, 369
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 3 cut(s) 11, 32, 101
NciI CCSGG 2 cut(s) 320, 369
NdeII GATC 1 cut(s) 327
NlaIV GGNNCC 1 cut(s) 138
PfeI GAWTC 2 cut(s) 359, 427
PkrI GCNGC 2 cut(s) 49, 94
Ppu21I YACGTR 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 138
PsuI RGATCY 1 cut(s) 327
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SaqAI TTAA 4 cut(s) 29, 164, 237, 420
SatI GCNGC 2 cut(s) 48, 93
Sau3AI GATC 1 cut(s) 327
ScrFI CCNGG 2 cut(s) 320, 369
SetI ASST 6 cut(s) 52, 82, 103, 174, 394, 420
SfaNI GCATC 3 cut(s) 79, 234, 280
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 5 cut(s) 71, 145, 161, 295, 433
SsiI CCGC 3 cut(s) 95, 285, 372
StyD4I CCNGG 2 cut(s) 318, 367
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 103
TasI AATT 5 cut(s) 71, 145, 161, 295, 433
TfiI GAWTC 2 cut(s) 359, 427
Tru1I TTAA 4 cut(s) 29, 164, 237, 420
Tru9I TTAA 4 cut(s) 29, 164, 237, 420
TseI GCWGC 2 cut(s) 47, 92
TspDTI ATGAA 2 cut(s) 234, 372
TspGWI ACGGA 1 cut(s) 202
XapI RAATTY 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.