FvH4_2g25300

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001867
Physical Location & Seq
Forward (+)
20577942 .. 20578735
794 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25300.t1

Sequence Viewer

Length: 531 bp
ATGGATCGAGCGGTAGGTTTCACTTTGATCTTGCCATTTGATCCATATGCAGACTCATTGAAGTTTCTCTTGGCAACCTACTTGATCCCTTACGTTGGAGAAAATGGTTATGTTGGCACAGTTCCATACCTTAGAAAAAGAAAATCTCGCAGATTGGCTGCATCACTGTTGGCGGTTGAGGCGGGACAAGATGCAATCGTACGTGCATTTCTGTATCAAAGAGCCTATGAGAAGGTGCAGCCCTATAACCTCACAGTGGCTCATTTTACAAACCGTATTTCTATGCTTAGGAACGAGCTTGGAATGTGTGGGATCAAAGATGAAGGCATCATAGTGCCGGAAGAGCTCGGGGCCGAGAATCGGACGTCCAGTAACATCATATCGGCCGATCCTAGCTCGCTTGCGTATGCAAGAACACCGCCGGAGATATTGAGGATTGTTTACTCAAGTGGGAATGAATCACTGCCGGGAGGATTTTACCCTGAAGGTGCAAATGGGAAAATTGCAAGGAGCTTCCTGAAGATCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

177

Amino Acids

19.47

Weight (kDa)

9.16

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 11 - 73 2e-14 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 368
AccBSI CCGCTC 1 cut(s) 11
AciI CCGC 4 cut(s) 11, 173, 182, 419
AclWI GGATC 5 cut(s) 12, 35, 79, 320, 383
AcoI YGGCCR 1 cut(s) 384
AcuI CTGAAG 1 cut(s) 504
AcyI GRCGYC 1 cut(s) 365
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 3 cut(s) 95, 256, 360
AgsI TTSAA 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 4 cut(s) 298, 346, 396, 513
AluI AGCT 4 cut(s) 298, 346, 396, 513
Alw21I GWGCWC 1 cut(s) 348
AlwI GGATC 5 cut(s) 12, 35, 79, 320, 383
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 2 cut(s) 351, 384
ApeKI GCWGC 2 cut(s) 158, 238
AspS9I GGNCC 1 cut(s) 351
AsuC2I CCSGG 1 cut(s) 468
AvaI CYCGRG 1 cut(s) 347
BanII GRGCYC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 145, 250
BcnI CCSGG 1 cut(s) 468
BfaI CTAG 1 cut(s) 393
BisI GCNGC 2 cut(s) 159, 239
BlsI GCNGC 2 cut(s) 160, 240
Bme1390I CCNGG 1 cut(s) 468
BmeT110I CYCGRG 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 468
BmsI GCATC 3 cut(s) 170, 181, 336
Bpu10I CCTNAGC 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 430
BpuMI CCSGG 1 cut(s) 468
BsaAI YACGTR 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 365
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 256, 360
Bse1I ACTGG 1 cut(s) 369
BseLI CCNNNNNNNGG 3 cut(s) 95, 256, 360
BseNI ACTGG 1 cut(s) 369
BseX3I CGGCCG 1 cut(s) 384
BseXI GCAGC 2 cut(s) 145, 250
BsgI GTGCAG 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 2 cut(s) 353, 386
BsiEI CGRYCG 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 348
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 3 cut(s) 338, 422, 467
BsiWI CGTACG 1 cut(s) 199
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 3 cut(s) 95, 256, 360
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 2 cut(s) 353, 386
BsoBI CYCGRG 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 7 cut(s) 4, 27, 40, 84, 312, 388, 522
BspACI CCGC 4 cut(s) 11, 173, 182, 419
BspANI GGCC 2 cut(s) 353, 386
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 5 cut(s) 12, 35, 79, 320, 383
BspQI GCTCTTC 1 cut(s) 336
BsrBI CCGCTC 1 cut(s) 11
BsrI ACTGG 1 cut(s) 369
BssMI GATC 7 cut(s) 4, 27, 40, 84, 312, 388, 522
BssNI GRCGYC 1 cut(s) 365
Bst4CI ACNGT 4 cut(s) 121, 168, 256, 275
Bst6I CTCTTC 1 cut(s) 336
BstACI GRCGYC 1 cut(s) 365
BstBAI YACGTR 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 398, 402
BstDEI CTNAG 2 cut(s) 131, 287
BstKTI GATC 7 cut(s) 7, 30, 43, 87, 315, 391, 525
BstMBI GATC 7 cut(s) 4, 27, 40, 84, 312, 388, 522
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 2 cut(s) 179, 343
BstSCI CCNGG 1 cut(s) 466
BstV1I GCAGC 2 cut(s) 145, 250
BstZI CGGCCG 1 cut(s) 384
BsuRI GGCC 2 cut(s) 353, 386
BtsI GCAGTG 1 cut(s) 461
BtsIMutI CAGTG 3 cut(s) 164, 261, 461
Cac8I GCNNGC 2 cut(s) 398, 402
Cfr13I GGNCC 1 cut(s) 351
Csp6I GTAC 1 cut(s) 200
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 2 cut(s) 131, 287
DpnI GATC 7 cut(s) 6, 29, 42, 86, 314, 390, 524
DpnII GATC 7 cut(s) 4, 27, 40, 84, 312, 388, 522
EaeI YGGCCR 1 cut(s) 384
EagI CGGCCG 1 cut(s) 384
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Ecl136II GAGCTC 1 cut(s) 346
EclXI CGGCCG 1 cut(s) 384
Eco24I GRGCYC 1 cut(s) 348
Eco52I CGGCCG 1 cut(s) 384
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 504
Eco88I CYCGRG 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 348
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 1 cut(s) 198
FauI CCCGC 1 cut(s) 175
FauNDI CATATG 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 159, 239
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 2 cut(s) 159, 239
FspBI CTAG 1 cut(s) 393
GluI GCNGC 2 cut(s) 159, 239
HaeIII GGCC 2 cut(s) 353, 386
HapII CCGG 3 cut(s) 338, 422, 467
Hin1I GRCGYC 1 cut(s) 365
HinfI GANTC 3 cut(s) 53, 358, 458
HpaII CCGG 3 cut(s) 338, 422, 467
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 1 cut(s) 363
Hpy188III TCNNGA 1 cut(s) 517
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 3 cut(s) 226, 317, 479
HpyCH4III ACNGT 4 cut(s) 121, 168, 256, 275
HpyCH4IV ACGT 3 cut(s) 93, 202, 365
HpyCH4V TGCA 8 cut(s) 50, 161, 194, 206, 238, 410, 491, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 343
HpyF3I CTNAG 2 cut(s) 131, 287
HpySE526I ACGT 3 cut(s) 93, 202, 365
Hsp92I GRCGYC 1 cut(s) 365
Kzo9I GATC 7 cut(s) 4, 27, 40, 84, 312, 388, 522
LguI GCTCTTC 1 cut(s) 336
LmnI GCTCC 1 cut(s) 510
LpnPI CCDG 5 cut(s) 351, 382, 435, 480, 495
Lsp1109I GCAGC 2 cut(s) 145, 250
LweI GCATC 3 cut(s) 170, 181, 336
MaeI CTAG 1 cut(s) 393
MaeII ACGT 3 cut(s) 93, 202, 365
MaeIII GTNAC 1 cut(s) 371
MalI GATC 7 cut(s) 6, 29, 42, 86, 314, 390, 524
MbiI CCGCTC 1 cut(s) 11
MboI GATC 7 cut(s) 4, 27, 40, 84, 312, 388, 522
MboII GAAGA 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 1 cut(s) 501
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 4 cut(s) 172, 260, 426, 464
MslI CAYNNNNRTG 1 cut(s) 332
MspI CCGG 3 cut(s) 338, 422, 467
MspR9I CCNGG 1 cut(s) 468
MwoI GCNNNNNNNGC 2 cut(s) 179, 343
NciI CCSGG 1 cut(s) 468
NdeI CATATG 1 cut(s) 46
NdeII GATC 7 cut(s) 4, 27, 40, 84, 312, 388, 522
NlaIV GGNNCC 1 cut(s) 352
NmeAIII GCCGAG 1 cut(s) 379
PciSI GCTCTTC 1 cut(s) 336
PfeI GAWTC 2 cut(s) 358, 458
Pfl23II CGTACG 1 cut(s) 199
PkrI GCNGC 2 cut(s) 160, 240
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
Ppu21I YACGTR 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 348
PspLI CGTACG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 351
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 332
SacI GAGCTC 1 cut(s) 348
SapI GCTCTTC 1 cut(s) 336
SatI GCNGC 2 cut(s) 159, 239
Sau3AI GATC 7 cut(s) 4, 27, 40, 84, 312, 388, 522
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 468
SduI GDGCHC 1 cut(s) 348
SfaNI GCATC 3 cut(s) 170, 181, 336
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 1 cut(s) 501
SsiI CCGC 4 cut(s) 11, 173, 182, 419
SspMI CTAG 1 cut(s) 393
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 466
TaaI ACNGT 4 cut(s) 121, 168, 256, 275
TaiI ACGT 3 cut(s) 96, 205, 368
TaqI TCGA 1 cut(s) 7
TasI AATT 1 cut(s) 501
TfiI GAWTC 2 cut(s) 358, 458
TscAI CASTG 3 cut(s) 171, 261, 468
TseI GCWGC 2 cut(s) 158, 238
TspDTI ATGAA 2 cut(s) 336, 471
TspRI CASTG 3 cut(s) 171, 261, 468
XspI CTAG 1 cut(s) 393
ZraI GACGTC 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.