Rh6BG050100

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001867
Physical Location & Seq
Forward (+)
8163717 .. 8165218
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG050100.1

Sequence Viewer

Length: 969 bp
ATGAAATTAGCAATGGCTAGTTCAATTTCTCATTTCAAGAACACTGCCTCCCTTTTTCTTCTTGCATTGAATCTCAGCCTCACTATTCACCAGGTCCTGAGTGCCACTGATAACAGTACTCTCAAGTACTGCGGACCCATTGCAGCCACTGATACTGATCGAGTTCAATTTGCTTTGAACTTGGAGTTCTTGGAGGCTGAGTTTTTTCTGTTCGGTGCTCTTGGCAAAGGCCTCGACAGCATCAATCCTGCTTATAGCCAAGGCGGTCCTCCTCCTATTGGTGGTCAGAAGGCCCTTCTTGAAGACCCTGTTGTCGCTCGTATCATTGAGGAATTTGCTTATGAAGAAGTTGGCAATATCAGAGCAATTATTGATACAGTAGGAGGATTTCCAAGGCCTCTCTTAAATATCAGCCGTGCGCAATTTGCAAGAAGTTTCGACGATGTAGTGGGTTACCGCCTCATTCCTCCATTTGAACCCTATGCAAACTCTCTCAATTTTCTGCTAGCAGCCTATATTATCCCGTATTTGGAACTAAATGGCTATGTCAGCACCCTTCCAAGCCTTAACAGCACTATTTCTCGCAGCTTGGTTGCAAAACTCTTGGGAATTAAAGGTGGACAAGATGCAGTGATACGTACGTTACTGTATGAGAGAGCAAACGAGAGGGTGGTTCCGTACAAATTCACGGTGGCTGAATTAACCAACCTTATCTCTGCAAGACGGAACTCGCTCGGTGGGTGTGGCAACAAAGATGAAGGCATCATACTGCCTAACAAGACGCTCGGGGCAGAAAATCAGACAACCAGCAATGTTCTATCCGCTGATGCAAATTCGCTTGCCTACGCGAGAACCCCGCCTGAGATCTTGAGGATTGTCTATGGAAGTTTCAATGAATCTGTGCCTGGAGGGTTTTTCCCTAAAGGAGCTAATGGAGTTATTGCAAAGAGCTACCTTACCAGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

322

Amino Acids

34.81

Weight (kDa)

6.76

Isoelectric Point (pI)

31.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 50 - 218 2.1e-24 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
Acc16I TGCGCA 1 cut(s) 420
AccII CGCG 1 cut(s) 848
AciI CCGC 5 cut(s) 132, 264, 457, 822, 857
AcsI RAATTY 3 cut(s) 332, 683, 832
AfaI GTAC 4 cut(s) 118, 128, 640, 680
AfiI CCNNNNNNNGG 3 cut(s) 278, 281, 529
AgsI TTSAA 8 cut(s) 24, 37, 70, 167, 178, 302, 476, 892
AjnI CCWGG 3 cut(s) 90, 904, 959
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
AluBI AGCT 3 cut(s) 588, 929, 951
AluI AGCT 3 cut(s) 588, 929, 951
Alw21I GWGCWC 1 cut(s) 220
AlwNI CAGNNNCTG 2 cut(s) 97, 149
Ama87I CYCGRG 1 cut(s) 785
AoxI GGCC 3 cut(s) 229, 291, 395
ApeKI GCWGC 3 cut(s) 143, 509, 585
ApoI RAATTY 3 cut(s) 332, 683, 832
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 4 cut(s) 94, 134, 266, 292
AsuHPI GGTGA 1 cut(s) 80
AsuNHI GCTAGC 1 cut(s) 505
AvaI CYCGRG 1 cut(s) 785
AvaII GGWCC 3 cut(s) 94, 134, 266
BaeI ACNNNNGTAYC 2 cut(s) 626, 659
BarI GAAGNNNNNNTAC 2 cut(s) 750, 782
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 3 cut(s) 155, 521, 597
BceAI ACGGC 1 cut(s) 399
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BciT130I CCWGG 3 cut(s) 92, 906, 961
BfaI CTAG 2 cut(s) 18, 506
BglII AGATCT 1 cut(s) 864
BisI GCNGC 3 cut(s) 144, 510, 586
BlsI GCNGC 3 cut(s) 145, 511, 587
BmcAI AGTACT 2 cut(s) 118, 128
Bme1390I CCNGG 3 cut(s) 92, 906, 961
Bme18I GGWCC 3 cut(s) 94, 134, 266
BmeT110I CYCGRG 1 cut(s) 785
BmgT120I GGNCC 4 cut(s) 94, 134, 266, 292
BmiI GGNNCC 2 cut(s) 136, 675
BmrFI CCNGG 3 cut(s) 92, 906, 961
BmsI GCATC 4 cut(s) 249, 616, 771, 817
BmtI GCTAGC 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 927
BpuEI CTTGAG 2 cut(s) 107, 889
BsaAI YACGTR 1 cut(s) 638
BsaBI GATNNNNATC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 259, 392
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 185, 215
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 281, 529
Bse3DI GCAATG 3 cut(s) 18, 138, 817
Bse8I GATNNNNATC 1 cut(s) 156
BseBI CCWGG 3 cut(s) 92, 906, 961
BseDI CCNNGG 2 cut(s) 259, 392
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 3 cut(s) 278, 281, 529
BseMI GCAATG 3 cut(s) 18, 138, 817
BseMII CTCAG 4 cut(s) 88, 89, 189, 852
BseRI GAGGAG 1 cut(s) 261
BseXI GCAGC 3 cut(s) 155, 521, 597
Bsh1236I CGCG 1 cut(s) 848
BshFI GGCC 3 cut(s) 231, 293, 397
BsiHKAI GWGCWC 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 785
BsiWI CGTACG 1 cut(s) 638
BslI CCNNNNNNNGG 3 cut(s) 278, 281, 529
BsnI GGCC 3 cut(s) 231, 293, 397
BsoBI CYCGRG 1 cut(s) 785
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 3 cut(s) 157, 864, 963
BspACI CCGC 5 cut(s) 132, 264, 457, 822, 857
BspANI GGCC 3 cut(s) 231, 293, 397
BspCNI CTCAG 4 cut(s) 87, 90, 190, 853
BspFNI CGCG 1 cut(s) 848
BspLI GGNNCC 2 cut(s) 136, 675
BspOI GCTAGC 1 cut(s) 509
BsrDI GCAATG 3 cut(s) 18, 138, 817
BssECI CCNNGG 2 cut(s) 259, 392
BssMI GATC 3 cut(s) 157, 864, 963
BssT1I CCWWGG 2 cut(s) 259, 392
Bst2UI CCWGG 3 cut(s) 92, 906, 961
Bst4CI ACNGT 4 cut(s) 116, 379, 648, 691
BstBAI YACGTR 1 cut(s) 638
BstC8I GCNNGC 2 cut(s) 507, 840
BstDEI CTNAG 4 cut(s) 74, 98, 198, 861
BstEII GGTNACC 1 cut(s) 452
BstFNI CGCG 1 cut(s) 848
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 3 cut(s) 160, 867, 966
BstMBI GATC 3 cut(s) 157, 864, 963
BstMWI GCNNNNNNNGC 4 cut(s) 237, 425, 549, 570
BstNI CCWGG 3 cut(s) 92, 906, 961
BstPI GGTNACC 1 cut(s) 452
BstSCI CCNGG 3 cut(s) 90, 904, 959
BstSNI TACGTA 1 cut(s) 638
BstUI CGCG 1 cut(s) 848
BstV1I GCAGC 3 cut(s) 155, 521, 597
BstV2I GAAGAC 1 cut(s) 309
BstX2I RGATCY 2 cut(s) 864, 963
BstYI RGATCY 2 cut(s) 864, 963
BsuRI GGCC 3 cut(s) 231, 293, 397
BtsI GCAGTG 2 cut(s) 42, 636
BtsIMutI CAGTG 4 cut(s) 42, 105, 147, 636
Cac8I GCNNGC 2 cut(s) 507, 840
CaiI CAGNNNCTG 2 cut(s) 97, 149
CfoI GCGC 1 cut(s) 421
Cfr13I GGNCC 4 cut(s) 94, 134, 266, 292
CseI GACGC 1 cut(s) 790
CsiI ACCWGGT 1 cut(s) 90
Csp6I GTAC 4 cut(s) 117, 127, 639, 679
CviQI GTAC 4 cut(s) 117, 127, 639, 679
DdeI CTNAG 4 cut(s) 74, 98, 198, 861
DpnI GATC 3 cut(s) 159, 866, 965
DpnII GATC 3 cut(s) 157, 864, 963
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
Eco105I TACGTA 1 cut(s) 638
Eco130I CCWWGG 2 cut(s) 259, 392
Eco147I AGGCCT 2 cut(s) 231, 397
Eco47I GGWCC 3 cut(s) 94, 134, 266
Eco88I CYCGRG 1 cut(s) 785
Eco91I GGTNACC 1 cut(s) 452
EcoO109I RGGNCCY 2 cut(s) 94, 292
EcoO65I GGTNACC 1 cut(s) 452
EcoRII CCWGG 3 cut(s) 90, 904, 959
EcoT14I CCWWGG 2 cut(s) 259, 392
ErhI CCWWGG 2 cut(s) 259, 392
FaiI YATR 8 cut(s) 255, 342, 483, 516, 546, 651, 767, 882
FauI CCCGC 1 cut(s) 864
Fnu4HI GCNGC 3 cut(s) 144, 510, 586
Fsp4HI GCNGC 3 cut(s) 144, 510, 586
FspBI CTAG 2 cut(s) 18, 506
FspI TGCGCA 1 cut(s) 420
GlaI GCGC 1 cut(s) 420
GluI GCNGC 3 cut(s) 144, 510, 586
GsuI CTGGAG 1 cut(s) 927
HaeIII GGCC 3 cut(s) 231, 293, 397
HgaI GACGC 1 cut(s) 790
HhaI GCGC 1 cut(s) 421
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HinfI GANTC 2 cut(s) 70, 896
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 620
Hpy188I TCNGA 3 cut(s) 288, 362, 801
Hpy188III TCNNGA 4 cut(s) 37, 97, 299, 868
Hpy8I GTNNAC 1 cut(s) 620
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 4 cut(s) 283, 305, 566, 752
HpyCH4III ACNGT 4 cut(s) 116, 379, 648, 691
HpyCH4IV ACGT 2 cut(s) 637, 641
HpyCH4V TGCA 9 cut(s) 65, 143, 428, 485, 596, 629, 719, 830, 944
HpyF10VI GCNNNNNNNGC 4 cut(s) 237, 425, 549, 570
HpyF3I CTNAG 4 cut(s) 74, 98, 198, 861
HpySE526I ACGT 2 cut(s) 637, 641
HspAI GCGC 1 cut(s) 419
Kzo9I GATC 3 cut(s) 157, 864, 963
LmnI GCTCC 1 cut(s) 926
Lsp1109I GCAGC 3 cut(s) 155, 521, 597
LweI GCATC 4 cut(s) 249, 616, 771, 817
MabI ACCWGGT 1 cut(s) 90
MaeI CTAG 2 cut(s) 18, 506
MaeII ACGT 2 cut(s) 637, 641
MaeIII GTNAC 2 cut(s) 452, 642
MalI GATC 3 cut(s) 159, 866, 965
MboI GATC 3 cut(s) 157, 864, 963
MboII GAAGA 3 cut(s) 50, 314, 356
MflI RGATCY 2 cut(s) 864, 963
MhlI GDGCHC 1 cut(s) 220
MseI TTAA 4 cut(s) 404, 567, 612, 701
MspA1I CMGCKG 1 cut(s) 824
MspR9I CCNGG 3 cut(s) 92, 906, 961
MvaI CCWGG 3 cut(s) 92, 906, 961
MvnI CGCG 1 cut(s) 848
MwoI GCNNNNNNNGC 4 cut(s) 237, 425, 549, 570
NdeII GATC 3 cut(s) 157, 864, 963
NheI GCTAGC 1 cut(s) 505
NlaIV GGNNCC 2 cut(s) 136, 675
NsbI TGCGCA 1 cut(s) 420
PceI AGGCCT 2 cut(s) 231, 397
PfeI GAWTC 2 cut(s) 70, 896
Pfl23II CGTACG 1 cut(s) 638
PkrI GCNGC 3 cut(s) 145, 511, 587
Ppu21I YACGTR 1 cut(s) 638
PpuMI RGGWCCY 1 cut(s) 94
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 3 cut(s) 90, 904, 959
PspEI GGTNACC 1 cut(s) 452
PspGI CCWGG 3 cut(s) 90, 904, 959
PspLI CGTACG 1 cut(s) 638
PspN4I GGNNCC 2 cut(s) 136, 675
PspPI GGNCC 4 cut(s) 94, 134, 266, 292
PspPPI RGGWCCY 1 cut(s) 94
PstNI CAGNNNCTG 2 cut(s) 97, 149
PsuI RGATCY 2 cut(s) 864, 963
RsaI GTAC 4 cut(s) 118, 128, 640, 680
RsaNI GTAC 4 cut(s) 117, 127, 639, 679
SaqAI TTAA 4 cut(s) 404, 567, 612, 701
SatI GCNGC 3 cut(s) 144, 510, 586
Sau3AI GATC 3 cut(s) 157, 864, 963
Sau96I GGNCC 4 cut(s) 94, 134, 266, 292
ScaI AGTACT 2 cut(s) 118, 128
ScrFI CCNGG 3 cut(s) 92, 906, 961
SduI GDGCHC 1 cut(s) 220
SetI ASST 9 cut(s) 96, 590, 619, 640, 644, 711, 931, 953, 957
SexAI ACCWGGT 1 cut(s) 90
SfaNI GCATC 4 cut(s) 249, 616, 771, 817
SinI GGWCC 3 cut(s) 94, 134, 266
SmlI CTYRAG 2 cut(s) 122, 868
SmoI CTYRAG 2 cut(s) 122, 868
SnaBI TACGTA 1 cut(s) 638
SseBI AGGCCT 2 cut(s) 231, 397
SsiI CCGC 5 cut(s) 132, 264, 457, 822, 857
SspMI CTAG 2 cut(s) 18, 506
StuI AGGCCT 2 cut(s) 231, 397
StyD4I CCNGG 3 cut(s) 90, 904, 959
StyI CCWWGG 2 cut(s) 259, 392
TaaI ACNGT 4 cut(s) 116, 379, 648, 691
TaiI ACGT 2 cut(s) 640, 644
TaqI TCGA 3 cut(s) 160, 234, 438
TatI WGTACW 2 cut(s) 116, 126
TfiI GAWTC 2 cut(s) 70, 896
Tru1I TTAA 4 cut(s) 404, 567, 612, 701
Tru9I TTAA 4 cut(s) 404, 567, 612, 701
TscAI CASTG 4 cut(s) 49, 112, 154, 636
TseI GCWGC 3 cut(s) 143, 509, 585
TspDTI ATGAA 4 cut(s) 17, 357, 771, 909
TspGWI ACGGA 2 cut(s) 666, 739
TspRI CASTG 4 cut(s) 49, 112, 154, 636
VpaK11BI GGWCC 3 cut(s) 94, 134, 266
XapI RAATTY 3 cut(s) 332, 683, 832
XspI CTAG 2 cut(s) 18, 506
ZrmI AGTACT 2 cut(s) 118, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.