RchiOBHm_Chr6g0293441

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001867
Physical Location & Seq
Forward (+)
56134385 .. 56135098
714 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26329

Sequence Viewer

Length: 507 bp
ATGGCTCGTTCAATCTCTCATTTTCTCATTACTGCCTTCCTTGTTCTTGTTGCTTTGGATCTCTGCCTTGTTCATGAGTTTGCTTTGAGCTTGGAATTCTTGGAGGCTGAGTTTTTCCAGTTTGGTGCTCTTGGAAGAGGGCTTGACAGTATCAGTCCAAATTTGGCCGGAGGTGGTCCGCCTCCTTCTGGTGCGCAGAAGGCGTTGCTCAACCCTAGCCTGTTAGCGATTATCGATGCAGTAGGAGGGATTCCGAGACCTCTGTTAAACATCAGCCGCGAAAATTTTGCGAGAGGTTTTAACGGCATAGTGGGTTTCAACCTGATCCCTCAGGCAAACACAGTCAATTATCTTTTAGCAGCCTATTCAATCCTTTATATTGGAATAGGAGGCTATGTTGGTAGAATCCGTAACCTTACTACTGTTGCTGATCGCGCGGTAAGACTATATATGAACCCTATTCTCATACTCGAACACGTTCCGTTGTATATGAGACTAATACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

168

Amino Acids

18.22

Weight (kDa)

7.95

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 26 - 141 1.9e-06 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 195
AccII CGCG 3 cut(s) 279, 435, 437
AciI CCGC 3 cut(s) 179, 277, 437
AclWI GGATC 2 cut(s) 66, 319
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 3 cut(s) 95, 160, 283
AfiI CCNNNNNNNGG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 3 cut(s) 12, 319, 369
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 2 cut(s) 250, 487
AlwI GGATC 2 cut(s) 66, 319
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 3 cut(s) 95, 160, 283
Asp700I GAANNNNTTC 1 cut(s) 477
AspLEI GCGC 2 cut(s) 196, 437
AspS9I GGNCC 1 cut(s) 176
AvaII GGWCC 1 cut(s) 176
AxyI CCTNAGG 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 371
BceAI ACGGC 1 cut(s) 319
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BcoDI GTCTC 2 cut(s) 250, 487
BfaI CTAG 1 cut(s) 216
BisI GCNGC 2 cut(s) 277, 360
BlsI GCNGC 2 cut(s) 278, 361
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmsI GCATC 1 cut(s) 226
Bsa29I ATCGAT 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 250
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 381, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 118
Bse21I CCTNAGG 1 cut(s) 330
BseCI ATCGAT 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 2 cut(s) 99, 344
BseNI ACTGG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 371
Bsh1236I CGCG 3 cut(s) 279, 435, 437
BshFI GGCC 1 cut(s) 167
BshVI ATCGAT 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 2 cut(s) 250, 487
BsnI GGCC 1 cut(s) 167
Bso31I GGTCTC 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 3 cut(s) 58, 324, 430
BspACI CCGC 3 cut(s) 179, 277, 437
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 2 cut(s) 100, 343
BspDI ATCGAT 1 cut(s) 234
BspFNI CGCG 3 cut(s) 279, 435, 437
BspHI TCATGA 1 cut(s) 73
BspPI GGATC 2 cut(s) 66, 319
BspTNI GGTCTC 1 cut(s) 250
BsrI ACTGG 1 cut(s) 118
BssMI GATC 3 cut(s) 58, 324, 430
Bst4CI ACNGT 3 cut(s) 149, 343, 424
Bst6I CTCTTC 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 108, 330
BstFNI CGCG 3 cut(s) 279, 435, 437
BstHHI GCGC 2 cut(s) 196, 437
BstKTI GATC 3 cut(s) 61, 327, 433
BstMAI GTCTC 2 cut(s) 250, 487
BstMBI GATC 3 cut(s) 58, 324, 430
BstMWI GCNNNNNNNGC 2 cut(s) 200, 434
BstUI CGCG 3 cut(s) 279, 435, 437
BstV1I GCAGC 1 cut(s) 371
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 234
Bsu36I CCTNAGG 1 cut(s) 330
BsuRI GGCC 1 cut(s) 167
BsuTUI ATCGAT 1 cut(s) 234
CciI TCATGA 1 cut(s) 73
CfoI GCGC 2 cut(s) 196, 437
Cfr13I GGNCC 1 cut(s) 176
ClaI ATCGAT 1 cut(s) 234
CviAII CATG 1 cut(s) 74
CviJI RGCY 9 cut(s) 5, 90, 107, 142, 167, 219, 276, 362, 393
CviKI_1 RGCY 9 cut(s) 5, 90, 107, 142, 167, 219, 276, 362, 393
DdeI CTNAG 2 cut(s) 108, 330
DpnI GATC 3 cut(s) 60, 326, 432
DpnII GATC 3 cut(s) 58, 324, 430
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
EciI GGCGGA 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 330
EcoRI GAATTC 1 cut(s) 95
FaeI CATG 1 cut(s) 77
FatI CATG 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 277, 360
Fsp4HI GCNGC 2 cut(s) 277, 360
FspBI CTAG 1 cut(s) 216
FspI TGCGCA 1 cut(s) 195
GlaI GCGC 2 cut(s) 195, 436
GluI GCNGC 2 cut(s) 277, 360
HaeIII GGCC 1 cut(s) 167
HapII CCGG 1 cut(s) 168
HhaI GCGC 2 cut(s) 196, 437
Hin1II CATG 1 cut(s) 77
Hin6I GCGC 2 cut(s) 194, 435
HinP1I GCGC 2 cut(s) 194, 435
HinfI GANTC 2 cut(s) 250, 405
HpaII CCGG 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 1 cut(s) 74
HpyAV CCTTC 3 cut(s) 46, 193, 195
HpyCH4III ACNGT 3 cut(s) 149, 343, 424
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 434
HpyF3I CTNAG 2 cut(s) 108, 330
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 1 cut(s) 77
HspAI GCGC 2 cut(s) 194, 435
Kzo9I GATC 3 cut(s) 58, 324, 430
LpnPI CCDG 6 cut(s) 131, 174, 181, 233, 317, 335
Lsp1109I GCAGC 1 cut(s) 371
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 410
MalI GATC 3 cut(s) 60, 326, 432
MboI GATC 3 cut(s) 58, 324, 430
MboII GAAGA 1 cut(s) 147
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 4 cut(s) 95, 160, 283, 346
MnlI CCTC 9 cut(s) 97, 131, 164, 192, 239, 270, 287, 339, 383
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 3 cut(s) 266, 300, 505
MspI CCGG 1 cut(s) 168
MvnI CGCG 3 cut(s) 279, 435, 437
MwoI GCNNNNNNNGC 2 cut(s) 200, 434
NdeII GATC 3 cut(s) 58, 324, 430
NlaIII CATG 1 cut(s) 77
NsbI TGCGCA 1 cut(s) 195
PagI TCATGA 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 2 cut(s) 250, 405
PkrI GCNGC 2 cut(s) 278, 361
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 58
SaqAI TTAA 3 cut(s) 266, 300, 505
SatI GCNGC 2 cut(s) 277, 360
Sau3AI GATC 3 cut(s) 58, 324, 430
Sau96I GGNCC 1 cut(s) 176
SduI GDGCHC 1 cut(s) 130
SetI ASST 7 cut(s) 92, 175, 262, 298, 324, 417, 480
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 1 cut(s) 176
Sse9I AATT 4 cut(s) 95, 160, 283, 346
SsiI CCGC 3 cut(s) 179, 277, 437
SspMI CTAG 1 cut(s) 216
TaaI ACNGT 3 cut(s) 149, 343, 424
TaiI ACGT 1 cut(s) 480
TaqI TCGA 2 cut(s) 234, 471
TasI AATT 4 cut(s) 95, 160, 283, 346
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 2 cut(s) 250, 405
Tru1I TTAA 3 cut(s) 266, 300, 505
Tru9I TTAA 3 cut(s) 266, 300, 505
TseI GCWGC 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 62, 467
TspGWI ACGGA 2 cut(s) 398, 471
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 3 cut(s) 95, 160, 283
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.