Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016103.1

Orthogroup ID

OG0001867

Physical Location & Seq

Genomic Coordinates Forward (+)

1184 .. 2460

Gene Structure 1277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016103.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggctcgttcaatttctcatttcaagaacactgcctccctttttcttcttgcattgaatctcagcctcactattcaccaggtcctgagtgccactgataacagtactctcaagtactgcggacccattgcagccactgatactgatctagttcaatttgctttgaactcgaagttcttggaggctgagttttttctgttcagtgctcttggcaaaggcctcgacagcatcaatcctgcttatagccaaggcggtcctcctcctattggtggtcagaaggcccttcttgaagaccctgttgtcgctcgtatcattgaggaatttgcttatgaagaagttggcaatatcagacggaactccctcggtgggtgtggcaacaaagatgaaggcatcatactgcctaacaagacgctcggggcagaaaatcagacaaccagcaatgttctatccgctgatgcaaattcgcttgcctacgcgagaaccccggctgagatcttgaggattctctatggaagtttcaatgaatctgtgcctggcgggtttttccctaaaggagctaatggagttattgcaaagagctaccttaccaggatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

198

Amino Acids

21.11

Weight (kDa)

5.7

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62730 AT3G62730
fragaria_vesca	FvH4_2g21640 FvH4_2g25280 FvH4_2g25280 FvH4_2g25300 FvH4_2g25320
malus_domestica	MD03G1284600.v1.1 MD11G1014700.v1.1
prunus_persica	Prupe.8G257600_v2.0.a1 Prupe.8G257700_v2.0.a1
pyrus_communis	pycom03g22540 pycom03g22550
rosa_chinensis	RchiOBHm_Chr6g0252921 RchiOBHm_Chr6g0293411 RchiOBHm_Chr6g0293441
rosa_laevigata	RLG00000011946 RLG00000011948 RLG00000015048 RLG00000032763
rosa_multiflora	Rmu_sc0002560.1_g000001 Rmu_sc0006269.1_g000018 Rmu_sc0006269.1_g000021 Rmu_sc0016103.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174150 Rroxscaffold_7G00174170 Rroxscaffold_7G00212280 Rroxscaffold_7G00212290
rosa_rugosa	Rorug05G0541500 Rorug06G0235500 Rorug06G0235700
rosa_samantha	Rh6AG055800 Rh6AG348200 Rh6AG348300 Rh6AG348400 Rh6BG050100 Rh6BG355900 Rh6BG356000 Rh6CG048500 Rh6CG362200 Rh6DG044100 Rh6DG349100 Rh6DG349600
rosa_wichuraiana	Rw6G005050 Rw6G030300 Rw6G030310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AccII	CGCG	1 cut(s)	476
AciI	CCGC	4 cut(s)	120, 252, 450, 537
AcsI	RAATTY	2 cut(s)	320, 460
AfaI	GTAC	2 cut(s)	106, 116
AfiI	CCNNNNNNNGG	3 cut(s)	266, 269, 366
AgsI	TTSAA	7 cut(s)	12, 25, 58, 155, 166, 290, 520
AjnI	CCWGG	3 cut(s)	78, 532, 587
AloI	GAACNNNNNNTCC	2 cut(s)	20, 52
AluBI	AGCT	2 cut(s)	557, 579
AluI	AGCT	2 cut(s)	557, 579
Alw21I	GWGCWC	1 cut(s)	208
AlwNI	CAGNNNCTG	2 cut(s)	85, 137
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	2 cut(s)	217, 279
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	2 cut(s)	320, 460
AspS9I	GGNCC	4 cut(s)	82, 122, 254, 280
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	3 cut(s)	82, 122, 254
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	143
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	3 cut(s)	80, 534, 589
BcnI	CCSGG	1 cut(s)	485
BfaI	CTAG	1 cut(s)	149
BglII	AGATCT	1 cut(s)	492
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmcAI	AGTACT	2 cut(s)	106, 116
Bme1390I	CCNGG	4 cut(s)	80, 485, 534, 589
Bme18I	GGWCC	3 cut(s)	82, 122, 254
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	4 cut(s)	82, 122, 254, 280
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	4 cut(s)	80, 485, 534, 589
BmsI	GCATC	3 cut(s)	237, 399, 445
BpiI	GAAGAC	1 cut(s)	297
BpuEI	CTTGAG	2 cut(s)	95, 517
BpuMI	CCSGG	1 cut(s)	485
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	247, 361, 483
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 173, 203
Bsc4I	CCNNNNNNNGG	3 cut(s)	266, 269, 366
Bse3DI	GCAATG	2 cut(s)	126, 445
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	3 cut(s)	80, 534, 589
BseDI	CCNNGG	3 cut(s)	247, 361, 483
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	3 cut(s)	266, 269, 366
BseMI	GCAATG	2 cut(s)	126, 445
BseMII	CTCAG	4 cut(s)	76, 77, 177, 480
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	476
BshFI	GGCC	2 cut(s)	219, 281
BsiHKAI	GWGCWC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	485
BslI	CCNNNNNNNGG	3 cut(s)	266, 269, 366
BsnI	GGCC	2 cut(s)	219, 281
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	145, 492, 591
BspACI	CCGC	4 cut(s)	120, 252, 450, 537
BspANI	GGCC	2 cut(s)	219, 281
BspCNI	CTCAG	4 cut(s)	75, 78, 178, 481
BspFNI	CGCG	1 cut(s)	476
BspLI	GGNNCC	1 cut(s)	124
BsrDI	GCAATG	2 cut(s)	126, 445
BssECI	CCNNGG	3 cut(s)	247, 361, 483
BssMI	GATC	3 cut(s)	145, 492, 591
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	3 cut(s)	80, 534, 589
Bst4CI	ACNGT	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	4 cut(s)	62, 86, 186, 489
BstFNI	CGCG	1 cut(s)	476
BstKTI	GATC	3 cut(s)	148, 495, 594
BstMBI	GATC	3 cut(s)	145, 492, 591
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	3 cut(s)	80, 534, 589
BstSCI	CCNGG	4 cut(s)	78, 483, 532, 587
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	1 cut(s)	143
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	2 cut(s)	492, 591
BstYI	RGATCY	2 cut(s)	492, 591
BsuRI	GGCC	2 cut(s)	219, 281
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	4 cut(s)	30, 93, 135, 208
Cac8I	GCNNGC	1 cut(s)	468
CaiI	CAGNNNCTG	2 cut(s)	85, 137
Cfr13I	GGNCC	4 cut(s)	82, 122, 254, 280
CseI	GACGC	1 cut(s)	418
CsiI	ACCWGGT	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	105, 115
CviQI	GTAC	2 cut(s)	105, 115
DdeI	CTNAG	4 cut(s)	62, 86, 186, 489
DpnI	GATC	3 cut(s)	147, 494, 593
DpnII	GATC	3 cut(s)	145, 492, 591
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	219
Eco47I	GGWCC	3 cut(s)	82, 122, 254
Eco88I	CYCGRG	1 cut(s)	413
EcoO109I	RGGNCCY	2 cut(s)	82, 280
EcoRII	CCWGG	3 cut(s)	78, 532, 587
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaiI	YATR	4 cut(s)	243, 330, 395, 510
FauI	CCCGC	1 cut(s)	530
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	219, 281
HapII	CCGG	1 cut(s)	485
HgaI	GACGC	1 cut(s)	418
HinfI	GANTC	3 cut(s)	58, 502, 524
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	1 cut(s)	68
Hpy188I	TCNGA	3 cut(s)	276, 350, 429
Hpy188III	TCNNGA	4 cut(s)	25, 85, 287, 496
HpyAV	CCTTC	3 cut(s)	271, 293, 380
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	4 cut(s)	53, 131, 458, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	4 cut(s)	62, 86, 186, 489
Kzo9I	GATC	3 cut(s)	145, 492, 591
LmnI	GCTCC	1 cut(s)	554
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	3 cut(s)	237, 399, 445
MabI	ACCWGGT	1 cut(s)	78
MaeI	CTAG	1 cut(s)	149
MalI	GATC	3 cut(s)	147, 494, 593
MboI	GATC	3 cut(s)	145, 492, 591
MboII	GAAGA	3 cut(s)	38, 302, 344
MflI	RGATCY	2 cut(s)	492, 591
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	4 cut(s)	12, 155, 320, 460
MnlI	CCTC	9 cut(s)	46, 77, 175, 230, 267, 270, 310, 371, 492
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	4 cut(s)	80, 485, 534, 589
MvaI	CCWGG	3 cut(s)	80, 534, 589
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	1 cut(s)	225
NciI	CCSGG	1 cut(s)	485
NdeII	GATC	3 cut(s)	145, 492, 591
NlaIV	GGNNCC	1 cut(s)	124
PceI	AGGCCT	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	58, 502, 524
PkrI	GCNGC	1 cut(s)	133
PpuMI	RGGWCCY	1 cut(s)	82
Psp5II	RGGWCCY	1 cut(s)	82
Psp6I	CCWGG	3 cut(s)	78, 532, 587
PspGI	CCWGG	3 cut(s)	78, 532, 587
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	4 cut(s)	82, 122, 254, 280
PspPPI	RGGWCCY	1 cut(s)	82
PstNI	CAGNNNCTG	2 cut(s)	85, 137
PsuI	RGATCY	2 cut(s)	492, 591
RsaI	GTAC	2 cut(s)	106, 116
RsaNI	GTAC	2 cut(s)	105, 115
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	3 cut(s)	145, 492, 591
Sau96I	GGNCC	4 cut(s)	82, 122, 254, 280
ScaI	AGTACT	2 cut(s)	106, 116
ScrFI	CCNGG	4 cut(s)	80, 485, 534, 589
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	4 cut(s)	84, 559, 581, 585
SexAI	ACCWGGT	1 cut(s)	78
SfaNI	GCATC	3 cut(s)	237, 399, 445
SinI	GGWCC	3 cut(s)	82, 122, 254
SmlI	CTYRAG	2 cut(s)	110, 496
SmoI	CTYRAG	2 cut(s)	110, 496
Sse9I	AATT	4 cut(s)	12, 155, 320, 460
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	4 cut(s)	120, 252, 450, 537
SspMI	CTAG	1 cut(s)	149
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	4 cut(s)	78, 483, 532, 587
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	2 cut(s)	170, 222
TasI	AATT	4 cut(s)	12, 155, 320, 460
TatI	WGTACW	2 cut(s)	104, 114
TfiI	GAWTC	3 cut(s)	58, 502, 524
TscAI	CASTG	4 cut(s)	37, 100, 142, 208
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	3 cut(s)	345, 399, 537
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	4 cut(s)	37, 100, 142, 208
VpaK11BI	GGWCC	3 cut(s)	82, 122, 254
XapI	RAATTY	2 cut(s)	320, 460
XspI	CTAG	1 cut(s)	149
ZrmI	AGTACT	2 cut(s)	106, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.