Rroxscaffold_7G00174170

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001867
Physical Location & Seq
Reverse (-)
13917648 .. 13919148
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174170.1

Sequence Viewer

Length: 930 bp
ATGGCTACTTCAATGAGTACTAATTCTAATGCCTTTGTTTTTCCTCTAGCTTTCTGTTTAGTTGGGATATCTCAGCTGCTGCTTTGCTCAGGTGATGCTCCCAACTGTGATCCCAATTTGATTGAAGCCAGTGATAGGGGCAGGCTCCAATTTGCTTTGAACTTGGAATTCTTGGAGGCCGAGTTTTTCTTGCATGCTGCTCTTGGCAAAGGTCTAGATGCTATCAGTCCAAATTTAACCCTAGGCGGCCCCCCTCCGATTGGTGCTCAGAAGGCGAATCTCGACCCTCTTGTTCGTCGTATCATCGAGGAATTCGGTTATCAAGAAGTTGGTCGTGTCAGATCAATTATTAGAAAAGAGGGAGGGTTTCCCAGGCCTTTGTTAGATCTCAGCCGTCAGAATTTCGCAAAACTAATGGATCGAGCAGTGGGTTTCACTCTGAACCCGCCATTCGATCCATATGCAAACTCACTTAATTATCTCTTGGCAACCTACACCATCCCTTATGTGGGATTAGTAGCTTATGTTGGCACAATTCCATACCTTAAAAACATGACATCTTGCAGATTGGCTGCATCACTTTTGGGGGTTGAGAGTGGACAAGATTCGGTCACACGTACATTTCTCTATCAGAGAGCCTTTGAGAAGGTGCAGCCCTATAACCTCACAGTGGCTGATTTTACAAACCGTATTTCTATGCTTAGGAACGATCTTGCAATGTGTGGGATCAAAGATGAAGGCATCATAGTGCCGGAGAAGCTTGGGGCGGAGAATCGGACGTCCAGTAACATCATATCGGCCGATCCTAACTCGCTTTCGTATGCAAGGACACCGCCGGAGATATTGAGGATTGTATATGGAAGTGGCAATGAATCACTGCCGGGCGGATTTTACCCTAAAGGTGCAAATGGGAATATTGCATACGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

309

Amino Acids

33.66

Weight (kDa)

5.98

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 45 - 211 2.5e-30 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 782
AciI CCGC 5 cut(s) 246, 446, 767, 833, 885
AclWI GGATC 5 cut(s) 104, 426, 449, 734, 797
AcoI YGGCCR 1 cut(s) 798
AcsI RAATTY 4 cut(s) 167, 232, 311, 400
AcyI GRCGYC 1 cut(s) 779
AfaI GTAC 2 cut(s) 19, 619
AfiI CCNNNNNNNGG 5 cut(s) 135, 260, 508, 509, 670
AflIII ACRYGT 1 cut(s) 614
AgsI TTSAA 3 cut(s) 12, 125, 160
AjnI CCWGG 1 cut(s) 371
AluBI AGCT 4 cut(s) 50, 76, 521, 760
AluI AGCT 4 cut(s) 50, 76, 521, 760
Alw21I GWGCWC 1 cut(s) 268
AlwI GGATC 5 cut(s) 104, 426, 449, 734, 797
AlwNI CAGNNNCTG 2 cut(s) 79, 674
AoxI GGCC 4 cut(s) 177, 247, 374, 798
ApeKI GCWGC 5 cut(s) 76, 79, 197, 572, 652
ApoI RAATTY 4 cut(s) 167, 232, 311, 400
AspA2I CCTAGG 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 248
AsuC2I CCSGG 1 cut(s) 882
AsuHPI GGTGA 1 cut(s) 104
AvrII CCTAGG 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 5 cut(s) 63, 66, 184, 559, 664
BccI CCATC 1 cut(s) 506
BceAI ACGGC 1 cut(s) 378
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BciT130I CCWGG 1 cut(s) 373
BcnI CCSGG 1 cut(s) 882
BfaI CTAG 3 cut(s) 47, 215, 242
BglII AGATCT 1 cut(s) 385
BisI GCNGC 6 cut(s) 77, 80, 198, 247, 573, 653
BlnI CCTAGG 1 cut(s) 241
BlsI GCNGC 6 cut(s) 78, 81, 199, 248, 574, 654
BmcAI AGTACT 1 cut(s) 19
Bme1390I CCNGG 2 cut(s) 373, 882
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 2 cut(s) 146, 250
BmrFI CCNGG 2 cut(s) 373, 882
BmsI GCATC 4 cut(s) 85, 208, 584, 750
Bpu10I CCTNAGC 2 cut(s) 88, 701
BpuMI CCSGG 1 cut(s) 882
BsaAI YACGTR 1 cut(s) 617
BsaHI GRCGYC 1 cut(s) 779
BsaJI CCNNGG 2 cut(s) 241, 371
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 5 cut(s) 135, 260, 508, 509, 670
Bse1I ACTGG 2 cut(s) 129, 783
Bse3DI GCAATG 2 cut(s) 723, 874
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 2 cut(s) 241, 371
BseGI GGATG 1 cut(s) 498
BseLI CCNNNNNNNGG 5 cut(s) 135, 260, 508, 509, 670
BseMI GCAATG 2 cut(s) 723, 874
BseMII CTCAG 4 cut(s) 86, 102, 281, 403
BseNI ACTGG 2 cut(s) 129, 783
BseX3I CGGCCG 1 cut(s) 798
BseXI GCAGC 5 cut(s) 63, 66, 184, 559, 664
BsgI GTGCAG 1 cut(s) 671
Bsh1285I CGRYCG 1 cut(s) 801
BshFI GGCC 4 cut(s) 179, 249, 376, 800
BsiEI CGRYCG 1 cut(s) 801
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 3 cut(s) 752, 836, 881
BslI CCNNNNNNNGG 5 cut(s) 135, 260, 508, 509, 670
BsnI GGCC 4 cut(s) 179, 249, 376, 800
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 8 cut(s) 109, 341, 385, 418, 454, 709, 726, 802
BspACI CCGC 5 cut(s) 246, 446, 767, 833, 885
BspANI GGCC 4 cut(s) 179, 249, 376, 800
BspCNI CTCAG 4 cut(s) 85, 101, 280, 402
BspLI GGNNCC 2 cut(s) 146, 250
BspPI GGATC 5 cut(s) 104, 426, 449, 734, 797
BsrDI GCAATG 2 cut(s) 723, 874
BsrI ACTGG 2 cut(s) 129, 783
BssECI CCNNGG 2 cut(s) 241, 371
BssMI GATC 8 cut(s) 109, 341, 385, 418, 454, 709, 726, 802
BssNI GRCGYC 1 cut(s) 779
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 3 cut(s) 107, 670, 689
BstACI GRCGYC 1 cut(s) 779
BstBAI YACGTR 1 cut(s) 617
BstC8I GCNNGC 2 cut(s) 143, 195
BstDEI CTNAG 5 cut(s) 72, 88, 267, 389, 701
BstF5I GGATG 1 cut(s) 498
BstKTI GATC 8 cut(s) 112, 344, 388, 421, 457, 712, 729, 805
BstMBI GATC 8 cut(s) 109, 341, 385, 418, 454, 709, 726, 802
BstMCI CGRYCG 1 cut(s) 801
BstMWI GCNNNNNNNGC 2 cut(s) 272, 757
BstNI CCWGG 1 cut(s) 373
BstNSI RCATGY 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 371, 880
BstV1I GCAGC 5 cut(s) 63, 66, 184, 559, 664
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BstZI CGGCCG 1 cut(s) 798
BsuRI GGCC 4 cut(s) 179, 249, 376, 800
BtsCI GGATG 1 cut(s) 498
BtsI GCAGTG 2 cut(s) 432, 875
BtsIMutI CAGTG 4 cut(s) 136, 432, 675, 875
Cac8I GCNNGC 2 cut(s) 143, 195
CaiI CAGNNNCTG 2 cut(s) 79, 674
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 18, 618
CviAII CATG 2 cut(s) 194, 553
CviQI GTAC 2 cut(s) 18, 618
DdeI CTNAG 5 cut(s) 72, 88, 267, 389, 701
DpnI GATC 8 cut(s) 111, 343, 387, 420, 456, 711, 728, 804
DpnII GATC 8 cut(s) 109, 341, 385, 418, 454, 709, 726, 802
EaeI YGGCCR 1 cut(s) 798
EagI CGGCCG 1 cut(s) 798
EciI GGCGGA 2 cut(s) 782, 900
EclXI CGGCCG 1 cut(s) 798
Eco130I CCWWGG 1 cut(s) 241
Eco147I AGGCCT 1 cut(s) 376
Eco32I GATATC 1 cut(s) 69
Eco52I CGGCCG 1 cut(s) 798
EcoRI GAATTC 2 cut(s) 167, 311
EcoRII CCWGG 1 cut(s) 371
EcoRV GATATC 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 2 cut(s) 197, 556
FatI CATG 2 cut(s) 193, 552
FauI CCCGC 1 cut(s) 453
FauNDI CATATG 1 cut(s) 460
Fnu4HI GCNGC 6 cut(s) 77, 80, 198, 247, 573, 653
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 6 cut(s) 77, 80, 198, 247, 573, 653
FspBI CTAG 3 cut(s) 47, 215, 242
GluI GCNGC 6 cut(s) 77, 80, 198, 247, 573, 653
HaeIII GGCC 4 cut(s) 179, 249, 376, 800
HapII CCGG 3 cut(s) 752, 836, 881
Hin1I GRCGYC 1 cut(s) 779
Hin1II CATG 2 cut(s) 197, 556
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 4 cut(s) 277, 605, 772, 872
HpaII CCGG 3 cut(s) 752, 836, 881
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 599
Hpy188I TCNGA 7 cut(s) 258, 270, 341, 399, 441, 633, 777
Hpy188III TCNNGA 3 cut(s) 215, 281, 323
Hpy8I GTNNAC 1 cut(s) 599
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 3 cut(s) 265, 640, 731
HpyCH4III ACNGT 3 cut(s) 107, 670, 689
HpyCH4IV ACGT 3 cut(s) 616, 779, 924
HpyCH4V TGCA 9 cut(s) 193, 464, 564, 575, 652, 716, 824, 905, 920
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 757
HpyF3I CTNAG 5 cut(s) 72, 88, 267, 389, 701
HpySE526I ACGT 3 cut(s) 616, 779, 924
Hsp92I GRCGYC 1 cut(s) 779
Hsp92II CATG 2 cut(s) 197, 556
Kzo9I GATC 8 cut(s) 109, 341, 385, 418, 454, 709, 726, 802
LmnI GCTCC 2 cut(s) 103, 150
LpnPI CCDG 9 cut(s) 75, 127, 142, 358, 385, 765, 796, 849, 894
Lsp1109I GCAGC 5 cut(s) 63, 66, 184, 559, 664
LweI GCATC 4 cut(s) 85, 208, 584, 750
MaeI CTAG 3 cut(s) 47, 215, 242
MaeII ACGT 3 cut(s) 616, 779, 924
MaeIII GTNAC 2 cut(s) 610, 785
MalI GATC 8 cut(s) 111, 343, 387, 420, 456, 711, 728, 804
MboI GATC 8 cut(s) 109, 341, 385, 418, 454, 709, 726, 802
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 268
MnlI CCTC 9 cut(s) 54, 169, 264, 297, 301, 352, 356, 674, 840
MseI TTAA 3 cut(s) 236, 474, 546
MslI CAYNNNNRTG 1 cut(s) 746
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 3 cut(s) 752, 836, 881
MspR9I CCNGG 2 cut(s) 373, 882
MvaI CCWGG 1 cut(s) 373
MwoI GCNNNNNNNGC 2 cut(s) 272, 757
NciI CCSGG 1 cut(s) 882
NdeI CATATG 1 cut(s) 460
NdeII GATC 8 cut(s) 109, 341, 385, 418, 454, 709, 726, 802
NlaIII CATG 2 cut(s) 197, 556
NlaIV GGNNCC 2 cut(s) 146, 250
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 610
NspI RCATGY 1 cut(s) 197
PaeI GCATGC 1 cut(s) 197
PceI AGGCCT 1 cut(s) 376
PfeI GAWTC 4 cut(s) 277, 605, 772, 872
PkrI GCNGC 6 cut(s) 78, 81, 199, 248, 574, 654
Ppu21I YACGTR 1 cut(s) 617
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 2 cut(s) 146, 250
PspPI GGNCC 1 cut(s) 248
PstNI CAGNNNCTG 2 cut(s) 79, 674
PsuI RGATCY 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 76
RsaI GTAC 2 cut(s) 19, 619
RsaNI GTAC 2 cut(s) 18, 618
RseI CAYNNNNRTG 1 cut(s) 746
SaqAI TTAA 3 cut(s) 236, 474, 546
SatI GCNGC 6 cut(s) 77, 80, 198, 247, 573, 653
Sau3AI GATC 8 cut(s) 109, 341, 385, 418, 454, 709, 726, 802
Sau96I GGNCC 1 cut(s) 248
ScaI AGTACT 1 cut(s) 19
ScrFI CCNGG 2 cut(s) 373, 882
SduI GDGCHC 1 cut(s) 268
SfaNI GCATC 4 cut(s) 85, 208, 584, 750
SmiMI CAYNNNNRTG 1 cut(s) 746
SphI GCATGC 1 cut(s) 197
SseBI AGGCCT 1 cut(s) 376
SsiI CCGC 5 cut(s) 246, 446, 767, 833, 885
SspI AATATT 1 cut(s) 916
SspMI CTAG 3 cut(s) 47, 215, 242
StuI AGGCCT 1 cut(s) 376
StyD4I CCNGG 2 cut(s) 371, 880
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 3 cut(s) 107, 670, 689
TaiI ACGT 3 cut(s) 619, 782, 927
TaqI TCGA 4 cut(s) 282, 306, 421, 453
TaqII GACCGA 1 cut(s) 598
TatI WGTACW 1 cut(s) 17
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 4 cut(s) 277, 605, 772, 872
Tru1I TTAA 3 cut(s) 236, 474, 546
Tru9I TTAA 3 cut(s) 236, 474, 546
TscAI CASTG 4 cut(s) 136, 432, 675, 882
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 5 cut(s) 76, 79, 197, 572, 652
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 2 cut(s) 750, 885
TspRI CASTG 4 cut(s) 136, 432, 675, 882
XapI RAATTY 4 cut(s) 167, 232, 311, 400
XbaI TCTAGA 1 cut(s) 214
XceI RCATGY 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmaJI CCTAGG 1 cut(s) 241
XspI CTAG 3 cut(s) 47, 215, 242
ZraI GACGTC 1 cut(s) 780
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.