Rroxscaffold_7G00212280

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001867
Physical Location & Seq
Reverse (-)
62682629 .. 62687288
4660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212280.1

Sequence Viewer

Length: 792 bp
ATGATCCAAATATGGTATCAAAGCCACTCCCCAGCTAGAAGTGTCAATGAGGTCGTCGGGCCCCTAAGAGGGGTAGATTGTGACATCCCACATCGCCCGGGGAGAGGAGAACACTGCCTCCCTTTTCTTCTTGCATTGAATCTCAGCCTCACTATTCACCAGGTCCTGAGTGCCACTGATAACAGCACTCTCAAGTACTGCGGACCCATTACAGCCACTGATACTGATCGAGTTCAATTTGCTTTGAACTTGGAGTACTTGGAGGCTGAGTTTTTTCTGGTCGCTGCTCTTGGCAAAGGCCTCGACAGCACCAATCCTGGTTTGAGCCAAGGCGGTCCTCCTCCTATTGGTGGTCAGAAGGCCCTTCTTGAAGACCCGGTTGTCGCTCGTATCATTGGGGAATTTGCTTATGAAGAAGTTGGCCATATCAGAGCGATTATTAGCAGAGTAGGAGGATTTCAAAGGCCTCTCTTAAATATCAGCCGTGGGCAATTTGCAAGAAGTTTGAACGATGTAGTGGGTTACCCCCTCATTCCTCCATTTGACCCCTATGCAAACTCTCTCAATTTTCTGCTAGCAGCCTATATTATCCCGTATTTGGGACTAAATGGCTATGTCAGCACCCTTCCAAGCCTTAACAGCACAAATTCTCGCAGCTTGGTTGCAGGACTCTTGGCAGTTGAAAGTGGACAAGATGCAGTGATACGTACATTACTGTATGAGAGAGCAAACGAGAGGCTGGTTCCGTACAAATTCACGGTTGTCAATAAGTTTCTCCGTCCTAAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

263

Amino Acids

28.78

Weight (kDa)

6.96

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 73 - 241 1.6e-30 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
AciI CCGC 2 cut(s) 201, 333
AcoI YGGCCR 1 cut(s) 421
AcsI RAATTY 3 cut(s) 401, 646, 752
AfaI GTAC 4 cut(s) 197, 257, 709, 749
AfiI CCNNNNNNNGG 8 cut(s) 68, 69, 70, 104, 347, 350, 598, 599
AgsI TTSAA 7 cut(s) 139, 236, 247, 371, 461, 508, 683
AjnI CCWGG 2 cut(s) 159, 316
AloI GAACNNNNNNTCC 2 cut(s) 102, 134
AluBI AGCT 2 cut(s) 35, 657
AluI AGCT 2 cut(s) 35, 657
AlwNI CAGNNNCTG 2 cut(s) 166, 218
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 5 cut(s) 59, 298, 360, 421, 464
ApaI GGGCCC 1 cut(s) 63
ApeKI GCWGC 3 cut(s) 284, 578, 654
ApoI RAATTY 3 cut(s) 401, 646, 752
AspS9I GGNCC 6 cut(s) 59, 60, 163, 203, 335, 361
AsuC2I CCSGG 3 cut(s) 98, 99, 377
AsuHPI GGTGA 1 cut(s) 149
AsuNHI GCTAGC 1 cut(s) 574
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 3 cut(s) 163, 203, 335
BaeGI GKGCMC 1 cut(s) 63
BalI TGGCCA 1 cut(s) 423
BanII GRGCYC 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 378
BbvI GCAGC 3 cut(s) 271, 590, 666
BceAI ACGGC 1 cut(s) 468
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 2 cut(s) 161, 318
BcnI CCSGG 3 cut(s) 98, 99, 377
BfaI CTAG 2 cut(s) 36, 575
BisI GCNGC 3 cut(s) 285, 579, 655
BlsI GCNGC 3 cut(s) 286, 580, 656
BmcAI AGTACT 2 cut(s) 197, 257
Bme1390I CCNGG 5 cut(s) 98, 99, 161, 318, 377
Bme18I GGWCC 3 cut(s) 163, 203, 335
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 6 cut(s) 59, 60, 163, 203, 335, 361
BmiI GGNNCC 4 cut(s) 61, 62, 205, 744
BmrFI CCNGG 5 cut(s) 98, 99, 161, 318, 377
BmsI GCATC 1 cut(s) 685
BmtI GCTAGC 1 cut(s) 578
BpiI GAAGAC 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 3 cut(s) 98, 99, 377
BsaAI YACGTR 1 cut(s) 707
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 4 cut(s) 97, 98, 328, 484
BsaXI ACNNNNNCTCC 4 cut(s) 102, 132, 254, 284
Bsc4I CCNNNNNNNGG 8 cut(s) 68, 69, 70, 104, 347, 350, 598, 599
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 2 cut(s) 161, 318
BseDI CCNNGG 4 cut(s) 97, 98, 328, 484
BseGI GGATG 1 cut(s) 84
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 8 cut(s) 68, 69, 70, 104, 347, 350, 598, 599
BseMII CTCAG 3 cut(s) 157, 158, 258
BseRI GAGGAG 2 cut(s) 120, 330
BseSI GKGCMC 1 cut(s) 63
BseXI GCAGC 3 cut(s) 271, 590, 666
BseYI CCCAGC 1 cut(s) 31
BshFI GGCC 5 cut(s) 61, 300, 362, 423, 466
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 2 cut(s) 98, 377
BslFI GGGAC 1 cut(s) 615
BslI CCNNNNNNNGG 8 cut(s) 68, 69, 70, 104, 347, 350, 598, 599
BsmFI GGGAC 1 cut(s) 615
BsnI GGCC 5 cut(s) 61, 300, 362, 423, 466
BsoBI CYCGRG 1 cut(s) 97
Bsp120I GGGCCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 2 cut(s) 3, 226
BspACI CCGC 2 cut(s) 201, 333
BspANI GGCC 5 cut(s) 61, 300, 362, 423, 466
BspCNI CTCAG 3 cut(s) 156, 159, 259
BspLI GGNNCC 4 cut(s) 61, 62, 205, 744
BspOI GCTAGC 1 cut(s) 578
BssECI CCNNGG 4 cut(s) 97, 98, 328, 484
BssMI GATC 2 cut(s) 3, 226
BssT1I CCWWGG 1 cut(s) 328
Bst2UI CCWGG 2 cut(s) 161, 318
Bst4CI ACNGT 2 cut(s) 717, 760
BstBAI YACGTR 1 cut(s) 707
BstC8I GCNNGC 1 cut(s) 576
BstDEI CTNAG 5 cut(s) 65, 143, 167, 267, 783
BstDSI CCRYGG 1 cut(s) 484
BstEII GGTNACC 1 cut(s) 521
BstF5I GGATG 1 cut(s) 84
BstKTI GATC 2 cut(s) 6, 229
BstMBI GATC 2 cut(s) 3, 226
BstMWI GCNNNNNNNGC 3 cut(s) 306, 618, 639
BstNI CCWGG 2 cut(s) 161, 318
BstPI GGTNACC 1 cut(s) 521
BstSCI CCNGG 5 cut(s) 96, 97, 159, 316, 375
BstSLI GKGCMC 1 cut(s) 63
BstSNI TACGTA 1 cut(s) 707
BstV1I GCAGC 3 cut(s) 271, 590, 666
BstV2I GAAGAC 1 cut(s) 378
BsuRI GGCC 5 cut(s) 61, 300, 362, 423, 466
BtgI CCRYGG 1 cut(s) 484
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 1 cut(s) 84
BtsI GCAGTG 2 cut(s) 112, 705
BtsIMutI CAGTG 4 cut(s) 112, 174, 216, 705
Cac8I GCNNGC 1 cut(s) 576
CaiI CAGNNNCTG 2 cut(s) 166, 218
Cfr13I GGNCC 6 cut(s) 59, 60, 163, 203, 335, 361
Cfr9I CCCGGG 1 cut(s) 97
CsiI ACCWGGT 1 cut(s) 159
Csp6I GTAC 4 cut(s) 196, 256, 708, 748
CviQI GTAC 4 cut(s) 196, 256, 708, 748
DdeI CTNAG 5 cut(s) 65, 143, 167, 267, 783
DpnI GATC 2 cut(s) 5, 228
DpnII GATC 2 cut(s) 3, 226
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
EaeI YGGCCR 1 cut(s) 421
Eco105I TACGTA 1 cut(s) 707
Eco130I CCWWGG 1 cut(s) 328
Eco147I AGGCCT 2 cut(s) 300, 466
Eco24I GRGCYC 1 cut(s) 63
Eco47I GGWCC 3 cut(s) 163, 203, 335
Eco88I CYCGRG 1 cut(s) 97
Eco91I GGTNACC 1 cut(s) 521
EcoO109I RGGNCCY 3 cut(s) 60, 163, 361
EcoO65I GGTNACC 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 159, 316
EcoT14I CCWWGG 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 328
FaiI YATR 7 cut(s) 13, 411, 426, 552, 585, 615, 720
FaqI GGGAC 1 cut(s) 615
Fnu4HI GCNGC 3 cut(s) 285, 579, 655
FokI GGATG 1 cut(s) 71
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 3 cut(s) 285, 579, 655
FspBI CTAG 2 cut(s) 36, 575
GluI GCNGC 3 cut(s) 285, 579, 655
GsaI CCCAGC 1 cut(s) 35
HaeIII GGCC 5 cut(s) 61, 300, 362, 423, 466
HapII CCGG 2 cut(s) 98, 377
HinfI GANTC 2 cut(s) 139, 669
HpaII CCGG 2 cut(s) 98, 377
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 689
Hpy188I TCNGA 2 cut(s) 357, 431
Hpy188III TCNNGA 2 cut(s) 166, 368
Hpy8I GTNNAC 1 cut(s) 689
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 3 cut(s) 352, 374, 635
HpyCH4III ACNGT 2 cut(s) 717, 760
HpyCH4IV ACGT 1 cut(s) 706
HpyCH4V TGCA 5 cut(s) 134, 497, 554, 665, 698
HpyF10VI GCNNNNNNNGC 3 cut(s) 306, 618, 639
HpyF3I CTNAG 5 cut(s) 65, 143, 167, 267, 783
HpySE526I ACGT 1 cut(s) 706
Kzo9I GATC 2 cut(s) 3, 226
Lsp1109I GCAGC 3 cut(s) 271, 590, 666
LweI GCATC 1 cut(s) 685
MabI ACCWGGT 1 cut(s) 159
MaeI CTAG 2 cut(s) 36, 575
MaeII ACGT 1 cut(s) 706
MaeIII GTNAC 2 cut(s) 80, 521
MalI GATC 2 cut(s) 5, 228
MboI GATC 2 cut(s) 3, 226
MboII GAAGA 3 cut(s) 119, 383, 425
MhlI GDGCHC 1 cut(s) 63
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 6 cut(s) 236, 401, 491, 565, 646, 752
MluNI TGGCCA 1 cut(s) 423
MlyI GAGTC 1 cut(s) 663
Mox20I TGGCCA 1 cut(s) 423
MscI TGGCCA 1 cut(s) 423
MseI TTAA 2 cut(s) 473, 636
Msp20I TGGCCA 1 cut(s) 423
MspI CCGG 2 cut(s) 98, 377
MspR9I CCNGG 5 cut(s) 98, 99, 161, 318, 377
MvaI CCWGG 2 cut(s) 161, 318
MwoI GCNNNNNNNGC 3 cut(s) 306, 618, 639
NciI CCSGG 3 cut(s) 98, 99, 377
NdeII GATC 2 cut(s) 3, 226
NheI GCTAGC 1 cut(s) 574
NlaIV GGNNCC 4 cut(s) 61, 62, 205, 744
NmuCI GTSAC 1 cut(s) 80
PceI AGGCCT 2 cut(s) 300, 466
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 3 cut(s) 286, 580, 656
PleI GAGTC 1 cut(s) 663
PpsI GAGTC 1 cut(s) 663
Ppu21I YACGTR 1 cut(s) 707
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 2 cut(s) 159, 316
PspEI GGTNACC 1 cut(s) 521
PspFI CCCAGC 1 cut(s) 31
PspGI CCWGG 2 cut(s) 159, 316
PspN4I GGNNCC 4 cut(s) 61, 62, 205, 744
PspOMI GGGCCC 1 cut(s) 59
PspPI GGNCC 6 cut(s) 59, 60, 163, 203, 335, 361
PspPPI RGGWCCY 1 cut(s) 163
PsrI GAACNNNNNNTAC 2 cut(s) 239, 271
PstNI CAGNNNCTG 2 cut(s) 166, 218
RsaI GTAC 4 cut(s) 197, 257, 709, 749
RsaNI GTAC 4 cut(s) 196, 256, 708, 748
SaqAI TTAA 2 cut(s) 473, 636
SatI GCNGC 3 cut(s) 285, 579, 655
Sau3AI GATC 2 cut(s) 3, 226
Sau96I GGNCC 6 cut(s) 59, 60, 163, 203, 335, 361
ScaI AGTACT 2 cut(s) 197, 257
SchI GAGTC 1 cut(s) 663
ScrFI CCNGG 5 cut(s) 98, 99, 161, 318, 377
SduI GDGCHC 1 cut(s) 63
SetI ASST 5 cut(s) 37, 54, 165, 659, 709
SexAI ACCWGGT 1 cut(s) 159
SfaNI GCATC 1 cut(s) 685
SinI GGWCC 3 cut(s) 163, 203, 335
SmaI CCCGGG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SnaBI TACGTA 1 cut(s) 707
Sse9I AATT 6 cut(s) 236, 401, 491, 565, 646, 752
SseBI AGGCCT 2 cut(s) 300, 466
SsiI CCGC 2 cut(s) 201, 333
SspMI CTAG 2 cut(s) 36, 575
StuI AGGCCT 2 cut(s) 300, 466
StyD4I CCNGG 5 cut(s) 96, 97, 159, 316, 375
StyI CCWWGG 1 cut(s) 328
TaaI ACNGT 2 cut(s) 717, 760
TaiI ACGT 1 cut(s) 709
TaqI TCGA 2 cut(s) 229, 303
TasI AATT 6 cut(s) 236, 401, 491, 565, 646, 752
TatI WGTACW 2 cut(s) 195, 255
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 2 cut(s) 473, 636
Tru9I TTAA 2 cut(s) 473, 636
TscAI CASTG 4 cut(s) 119, 181, 223, 705
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 3 cut(s) 284, 578, 654
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 426
TspGWI ACGGA 2 cut(s) 735, 767
TspMI CCCGGG 1 cut(s) 97
TspRI CASTG 4 cut(s) 119, 181, 223, 705
VpaK11BI GGWCC 3 cut(s) 163, 203, 335
XapI RAATTY 3 cut(s) 401, 646, 752
XmaI CCCGGG 1 cut(s) 97
XspI CTAG 2 cut(s) 36, 575
ZrmI AGTACT 2 cut(s) 197, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.