Rh6AG348400

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001867
Physical Location & Seq
Forward (+)
54858527 .. 54863362
4836 bp
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UTR
Exon/CDS
Intron
Rh6AG348400.1

Sequence Viewer

Length: 285 bp
ATGCCCCTCCCGAACGTGAATGATACTGACCGCCTTCAGTTTGCTTTGAACTTGGAATTCTTGGAGGCTGAGTTTTTCCAGTTTGGTGCTCTTGGAAGAGGGCTTGACAGTATCAGTCCAAATTTGGCCGGAGGTGGTCCGCCTCCTTCTGGTGCGCAGAAGGCGTTGCTCAACCCTGTTGTTGCTCGAATCATCGAGGAATTCGGTGGCTTTACCAATATGGACGACGGGAACATTCCGGGCCCAACTACCCAAACCTTAGCGCTCCCAATTCTTCTACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

94

Amino Acids

9.92

Weight (kDa)

4.11

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 7 - 69 7.2e-09 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 156
AciI CCGC 2 cut(s) 31, 140
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 3 cut(s) 56, 121, 200
AcuI CTGAAG 1 cut(s) 20
AfeI AGCGCT 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 49
Alw21I GWGCWC 1 cut(s) 91
Aor51HI AGCGCT 1 cut(s) 264
AoxI GGCC 2 cut(s) 126, 241
ApaI GGGCCC 1 cut(s) 245
ApoI RAATTY 3 cut(s) 56, 121, 200
AspLEI GCGC 2 cut(s) 157, 265
AspS9I GGNCC 3 cut(s) 137, 241, 242
AsuC2I CCSGG 1 cut(s) 240
AvaII GGWCC 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 91
BcnI CCSGG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 3 cut(s) 137, 241, 242
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 79
BseSI GKGCMC 1 cut(s) 245
BshFI GGCC 2 cut(s) 128, 243
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 2 cut(s) 129, 239
BslI CCNNNNNNNGG 1 cut(s) 149
BsnI GGCC 2 cut(s) 128, 243
Bsp120I GGGCCC 1 cut(s) 241
Bsp1286I GDGCHC 2 cut(s) 91, 245
BspACI CCGC 2 cut(s) 31, 140
BspANI GGCC 2 cut(s) 128, 243
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 243
BsrI ACTGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 69, 259
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 2 cut(s) 157, 265
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 238
BstSLI GKGCMC 1 cut(s) 245
BsuRI GGCC 2 cut(s) 128, 243
CfoI GCGC 2 cut(s) 157, 265
Cfr13I GGNCC 3 cut(s) 137, 241, 242
CviJI RGCY 5 cut(s) 68, 103, 128, 210, 243
CviKI_1 RGCY 5 cut(s) 68, 103, 128, 210, 243
DdeI CTNAG 2 cut(s) 69, 259
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
EciI GGCGGA 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 137
Eco47III AGCGCT 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 20
EcoRI GAATTC 2 cut(s) 56, 200
EcoT38I GRGCYC 1 cut(s) 245
FaiI YATR 2 cut(s) 221, 283
FriOI GRGCYC 1 cut(s) 245
FspI TGCGCA 1 cut(s) 156
GlaI GCGC 2 cut(s) 156, 264
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 2 cut(s) 128, 243
HapII CCGG 2 cut(s) 129, 239
HhaI GCGC 2 cut(s) 157, 265
Hin6I GCGC 2 cut(s) 155, 263
HinP1I GCGC 2 cut(s) 155, 263
HinfI GANTC 1 cut(s) 189
HpaII CCGG 2 cut(s) 129, 239
Hpy188III TCNNGA 1 cut(s) 10
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 44, 154, 156
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 69, 259
HpySE526I ACGT 1 cut(s) 15
HspAI GCGC 2 cut(s) 155, 263
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 5 cut(s) 92, 135, 142, 189, 252
MaeII ACGT 1 cut(s) 15
MboII GAAGA 2 cut(s) 108, 266
MhlI GDGCHC 2 cut(s) 91, 245
MluCI AATT 4 cut(s) 56, 121, 200, 270
MnlI CCTC 6 cut(s) 17, 58, 92, 125, 153, 190
MspI CCGG 2 cut(s) 129, 239
MspR9I CCNGG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 161
NciI CCSGG 1 cut(s) 240
NlaIV GGNNCC 1 cut(s) 243
NsbI TGCGCA 1 cut(s) 156
PfeI GAWTC 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 243
PspOMI GGGCCC 1 cut(s) 241
PspPI GGNCC 3 cut(s) 137, 241, 242
Sau96I GGNCC 3 cut(s) 137, 241, 242
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 2 cut(s) 91, 245
SetI ASST 3 cut(s) 18, 136, 260
SinI GGWCC 1 cut(s) 137
Sse9I AATT 4 cut(s) 56, 121, 200, 270
SsiI CCGC 2 cut(s) 31, 140
StyD4I CCNGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 187, 195
TasI AATT 4 cut(s) 56, 121, 200, 270
TfiI GAWTC 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 137
XapI RAATTY 3 cut(s) 56, 121, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.