Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006269.1

Orthogroup ID

OG0001867

Physical Location & Seq

Genomic Coordinates Reverse (-)

89115 .. 90374

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006269.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgagtactaattctaatgcctttgtttttcctcttgctttctgtttagttgggatatctcagctgctgctttgctcaggtgatgctcccaactgtgatcccaatttgattgaagccagtgatagggacaggctccaatttgctttgaacttggaattcttggagaccgagtttttcttgtatgctgctcttggaaaaggtctagatgctatcagtccaaatttaaccctaggcggcccccctccgattggtgctcagaaggcgaatctcgaacctcttgttcgtcgtatcatcgaggaattcggttatcaagaagttggtcatatcaggaacgatcttgcaatgtgtggaatcaaagatgaaggcatcatagtgccggagaagcttggggcggagaatcggacgtccagtaacatcatatcagccgatcctaactcgctttcgtatgcaaggacaccgccgcagatattgaggattgtatatgcaagtggcaatgaatcactgccgggcggattttaccctaaaggtgcaaatgggaatattgcaaggcgcttcttgaagattaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

189

Amino Acids

20.45

Weight (kDa)

5.06

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62730 AT3G62730
fragaria_vesca	FvH4_2g21640 FvH4_2g25280 FvH4_2g25280 FvH4_2g25300 FvH4_2g25320
malus_domestica	MD03G1284600.v1.1 MD11G1014700.v1.1
prunus_persica	Prupe.8G257600_v2.0.a1 Prupe.8G257700_v2.0.a1
pyrus_communis	pycom03g22540 pycom03g22550
rosa_chinensis	RchiOBHm_Chr6g0252921 RchiOBHm_Chr6g0293411 RchiOBHm_Chr6g0293441
rosa_laevigata	RLG00000011946 RLG00000011948 RLG00000015048 RLG00000032763
rosa_multiflora	Rmu_sc0002560.1_g000001 Rmu_sc0006269.1_g000018 Rmu_sc0006269.1_g000021 Rmu_sc0016103.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174150 Rroxscaffold_7G00174170 Rroxscaffold_7G00212280 Rroxscaffold_7G00212290
rosa_rugosa	Rorug05G0541500 Rorug06G0235500 Rorug06G0235700
rosa_samantha	Rh6AG055800 Rh6AG348200 Rh6AG348300 Rh6AG348400 Rh6BG050100 Rh6BG355900 Rh6BG356000 Rh6CG048500 Rh6CG362200 Rh6DG044100 Rh6DG349100 Rh6DG349600
rosa_wichuraiana	Rw6G005050 Rw6G030300 Rw6G030310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	407
AciI	CCGC	5 cut(s)	234, 392, 458, 461, 510
AclWI	GGATC	2 cut(s)	92, 422
AcsI	RAATTY	3 cut(s)	155, 220, 299
AcyI	GRCGYC	1 cut(s)	404
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	2 cut(s)	123, 248
AgsI	TTSAA	3 cut(s)	113, 148, 559
AluBI	AGCT	2 cut(s)	64, 385
AluI	AGCT	2 cut(s)	64, 385
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	2 cut(s)	92, 422
AlwNI	CAGNNNCTG	1 cut(s)	67
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	3 cut(s)	64, 67, 185
ApoI	RAATTY	3 cut(s)	155, 220, 299
AseI	ATTAAT	1 cut(s)	564
AspA2I	CCTAGG	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	552
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	1 cut(s)	507
AsuHPI	GGTGA	1 cut(s)	92
AvrII	CCTAGG	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	3 cut(s)	51, 54, 172
BcnI	CCSGG	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	2 cut(s)	203, 230
BfoI	RGCGCY	1 cut(s)	553
BisI	GCNGC	5 cut(s)	65, 68, 186, 235, 461
BlnI	CCTAGG	1 cut(s)	229
BlsI	GCNGC	5 cut(s)	66, 69, 187, 236, 462
BmcAI	AGTACT	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	134, 238
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	3 cut(s)	73, 196, 375
Bpu10I	CCTNAGC	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 248
Bse1I	ACTGG	2 cut(s)	117, 408
Bse3DI	GCAATG	2 cut(s)	348, 499
BseDI	CCNNGG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	123, 248
BseMI	GCAATG	2 cut(s)	348, 499
BseMII	CTCAG	3 cut(s)	74, 90, 269
BseNI	ACTGG	2 cut(s)	117, 408
BseXI	GCAGC	3 cut(s)	51, 54, 172
BshFI	GGCC	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	256
BsiSI	CCGG	2 cut(s)	377, 506
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	123, 248
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	237
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	3 cut(s)	97, 334, 427
BspACI	CCGC	5 cut(s)	234, 392, 458, 461, 510
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	3 cut(s)	73, 89, 268
BspLI	GGNNCC	2 cut(s)	134, 238
BspPI	GGATC	2 cut(s)	92, 422
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	348, 499
BsrI	ACTGG	2 cut(s)	117, 408
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	3 cut(s)	97, 334, 427
BssNI	GRCGYC	1 cut(s)	404
BssT1I	CCWWGG	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	404
BstDEI	CTNAG	3 cut(s)	60, 76, 255
BstH2I	RGCGCY	1 cut(s)	553
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	3 cut(s)	100, 337, 430
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	3 cut(s)	97, 334, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 382
BstSCI	CCNGG	1 cut(s)	505
BstV1I	GCAGC	3 cut(s)	51, 54, 172
BsuRI	GGCC	1 cut(s)	237
BtsI	GCAGTG	1 cut(s)	500
BtsIMutI	CAGTG	2 cut(s)	124, 500
CaiI	CAGNNNCTG	1 cut(s)	67
CfoI	GCGC	1 cut(s)	552
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	6
CviJI	RGCY	6 cut(s)	64, 116, 133, 237, 385, 425
CviKI_1	RGCY	6 cut(s)	64, 116, 133, 237, 385, 425
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	3 cut(s)	60, 76, 255
DpnI	GATC	3 cut(s)	99, 336, 429
DpnII	GATC	3 cut(s)	97, 334, 427
EciI	GGCGGA	2 cut(s)	407, 525
Eco130I	CCWWGG	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	57
EcoRI	GAATTC	2 cut(s)	155, 299
EcoRV	GATATC	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
FaiI	YATR	7 cut(s)	183, 324, 371, 419, 447, 481, 483
FaqI	GGGAC	1 cut(s)	140
Fnu4HI	GCNGC	5 cut(s)	65, 68, 186, 235, 461
Fsp4HI	GCNGC	5 cut(s)	65, 68, 186, 235, 461
FspBI	CTAG	2 cut(s)	203, 230
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	5 cut(s)	65, 68, 186, 235, 461
HaeII	RGCGCY	1 cut(s)	553
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	2 cut(s)	377, 506
HhaI	GCGC	1 cut(s)	552
Hin1I	GRCGYC	1 cut(s)	404
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	4 cut(s)	265, 351, 397, 497
HpaII	CCGG	2 cut(s)	377, 506
HphI	GGTGA	1 cut(s)	92
Hpy188I	TCNGA	3 cut(s)	246, 258, 402
Hpy188III	TCNNGA	5 cut(s)	203, 269, 311, 328, 556
Hpy99I	CGWCG	1 cut(s)	288
HpyAV	CCTTC	2 cut(s)	253, 356
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	5 cut(s)	341, 449, 485, 530, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 382
HpyF3I	CTNAG	3 cut(s)	60, 76, 255
HpySE526I	ACGT	1 cut(s)	404
Hsp92I	GRCGYC	1 cut(s)	404
HspAI	GCGC	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	97, 334, 427
LmnI	GCTCC	2 cut(s)	91, 138
LpnPI	CCDG	7 cut(s)	63, 115, 130, 313, 390, 421, 519
Lsp1109I	GCAGC	3 cut(s)	51, 54, 172
LweI	GCATC	3 cut(s)	73, 196, 375
MaeI	CTAG	2 cut(s)	203, 230
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	3 cut(s)	99, 336, 429
MboI	GATC	3 cut(s)	97, 334, 427
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	7 cut(s)	10, 103, 137, 155, 220, 299, 565
MnlI	CCTC	5 cut(s)	42, 252, 285, 289, 465
MseI	TTAA	3 cut(s)	224, 564, 568
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	2 cut(s)	377, 506
MspR9I	CCNGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	260, 382
NciI	CCSGG	1 cut(s)	507
NdeII	GATC	3 cut(s)	97, 334, 427
NlaIV	GGNNCC	2 cut(s)	134, 238
PacI	TTAATTAA	1 cut(s)	568
PfeI	GAWTC	4 cut(s)	265, 351, 397, 497
PkrI	GCNGC	5 cut(s)	66, 69, 187, 236, 462
PshBI	ATTAAT	1 cut(s)	564
PspN4I	GGNNCC	2 cut(s)	134, 238
PspPI	GGNCC	1 cut(s)	236
PstNI	CAGNNNCTG	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	3 cut(s)	224, 564, 568
SatI	GCNGC	5 cut(s)	65, 68, 186, 235, 461
Sau3AI	GATC	3 cut(s)	97, 334, 427
Sau96I	GGNCC	1 cut(s)	236
ScaI	AGTACT	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	7 cut(s)	66, 82, 202, 277, 387, 407, 529
SfaNI	GCATC	3 cut(s)	73, 196, 375
SmiMI	CAYNNNNRTG	1 cut(s)	371
Sse9I	AATT	7 cut(s)	10, 103, 137, 155, 220, 299, 565
SsiI	CCGC	5 cut(s)	234, 392, 458, 461, 510
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	2 cut(s)	203, 230
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	2 cut(s)	270, 294
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	7 cut(s)	10, 103, 137, 155, 220, 299, 565
TatI	WGTACW	1 cut(s)	5
TauI	GCSGC	2 cut(s)	237, 463
TfiI	GAWTC	4 cut(s)	265, 351, 397, 497
Tru1I	TTAA	3 cut(s)	224, 564, 568
Tru9I	TTAA	3 cut(s)	224, 564, 568
TscAI	CASTG	2 cut(s)	124, 507
TseI	GCWGC	3 cut(s)	64, 67, 185
TspDTI	ATGAA	2 cut(s)	375, 510
TspRI	CASTG	2 cut(s)	124, 507
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	3 cut(s)	155, 220, 299
XbaI	TCTAGA	1 cut(s)	202
XmaJI	CCTAGG	1 cut(s)	229
XspI	CTAG	2 cut(s)	203, 230
ZraI	GACGTC	1 cut(s)	405
ZrmI	AGTACT	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.