Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001867

Physical Location & Seq

Genomic Coordinates Reverse (-)

37787406 .. 37787981

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0235500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTCGGTCTTTTCATCTAGTATCAAGCTATTGTCCGAGAGGCCTTACTATACAAAGTTGATTGCAGACCATCTTTCCGGCATGGGTGTGCCACAACGTGTACGACCATATATTATCCAAGAGATATTCCGGGCAGTGGATGTGGCCGTCCCCGATATCGTTATTGATGTGACCATAGGCGACAGAACGACGCTCATATATGGCGATTATGCTAGGACAATTGAAGATAGGGTTATAAGTGAATCCCTGGAAGGATATAAGGCCAAGCTTATTCCTGCAACTAAATCATCAATTGATGGTTTGGAGAAAGTGAGAGTTGATAGTTTTCAAGGGGAAGAAGAAGGTAGCAGACCCAAGAAAAGAAGTAGGCAGTCTTGTGTTATTTGTCTGGATCCCCTTGATGCTGCCACTGCTTCTTGTGCAGAAGAAGAGGGTCGGGACAAGACAATTAATCGCCTGCCCTGCTCGCATCTTTATCATGGAGATTGCATTGTCAAGTGGCTTAACATCAACCATGTGCGTCCTATGTGCCGATACCCAATGCCAACTGTGGAAGAGGCCAAACCGTTGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

191

Amino Acids

21.5

Weight (kDa)

6.44

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	125 - 178	1.8e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	125 - 178	4.7e-07	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62730 AT3G62730
fragaria_vesca	FvH4_2g21640 FvH4_2g25280 FvH4_2g25280 FvH4_2g25300 FvH4_2g25320
malus_domestica	MD03G1284600.v1.1 MD11G1014700.v1.1
prunus_persica	Prupe.8G257600_v2.0.a1 Prupe.8G257700_v2.0.a1
pyrus_communis	pycom03g22540 pycom03g22550
rosa_chinensis	RchiOBHm_Chr6g0252921 RchiOBHm_Chr6g0293411 RchiOBHm_Chr6g0293441
rosa_laevigata	RLG00000011946 RLG00000011948 RLG00000015048 RLG00000032763
rosa_multiflora	Rmu_sc0002560.1_g000001 Rmu_sc0006269.1_g000018 Rmu_sc0006269.1_g000021 Rmu_sc0016103.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174150 Rroxscaffold_7G00174170 Rroxscaffold_7G00212280 Rroxscaffold_7G00212290
rosa_rugosa	Rorug05G0541500 Rorug06G0235500 Rorug06G0235700
rosa_samantha	Rh6AG055800 Rh6AG348200 Rh6AG348300 Rh6AG348400 Rh6BG050100 Rh6BG355900 Rh6BG356000 Rh6CG048500 Rh6CG362200 Rh6DG044100 Rh6DG349100 Rh6DG349600
rosa_wichuraiana	Rw6G005050 Rw6G030300 Rw6G030310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AclWI	GGATC	2 cut(s)	386, 399
AcoI	YGGCCR	1 cut(s)	144
AdeI	CACNNNGTG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	2 cut(s)	224, 329
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	2 cut(s)	28, 268
AluI	AGCT	2 cut(s)	28, 268
AlwI	GGATC	2 cut(s)	386, 399
AoxI	GGCC	4 cut(s)	41, 144, 261, 558
ApeKI	GCWGC	1 cut(s)	404
AseI	ATTAAT	1 cut(s)	450
AsuC2I	CCSGG	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	2 cut(s)	78, 290
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	248
BcnI	CCSGG	1 cut(s)	131
BfaI	CTAG	2 cut(s)	18, 213
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	2 cut(s)	131, 248
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	2 cut(s)	131, 248
BmsI	GCATC	2 cut(s)	391, 478
BpuMI	CCSGG	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	391
BsgI	GTGCAG	1 cut(s)	441
BshFI	GGCC	4 cut(s)	43, 146, 263, 560
BsiSI	CCGG	2 cut(s)	78, 130
BslFI	GGGAC	2 cut(s)	134, 452
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmFI	GGGAC	2 cut(s)	134, 452
BsnI	GGCC	4 cut(s)	43, 146, 263, 560
Bsp143I	GATC	1 cut(s)	391
BspANI	GGCC	4 cut(s)	43, 146, 263, 560
BspLI	GGNNCC	1 cut(s)	393
BspPI	GGATC	2 cut(s)	386, 399
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	550, 567
Bst6I	CTCTTC	2 cut(s)	423, 549
BstC8I	GCNNGC	2 cut(s)	458, 467
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	4 cut(s)	410, 419, 462, 466
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	2 cut(s)	129, 246
BstV1I	GCAGC	1 cut(s)	391
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	4 cut(s)	43, 146, 263, 560
BtsCI	GGATG	1 cut(s)	145
BtsI	GCAGTG	2 cut(s)	141, 408
BtsIMutI	CAGTG	2 cut(s)	141, 408
Cac8I	GCNNGC	2 cut(s)	458, 467
CseI	GACGC	2 cut(s)	199, 509
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	3 cut(s)	82, 479, 515
CviJI	RGCY	7 cut(s)	28, 43, 146, 263, 268, 502, 560
CviKI_1	RGCY	7 cut(s)	28, 43, 146, 263, 268, 502, 560
CviQI	GTAC	1 cut(s)	101
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
DraIII	CACNNNGTG	1 cut(s)	98
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	2 cut(s)	423, 549
EarI	CTCTTC	2 cut(s)	423, 549
Eco147I	AGGCCT	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	246
EcoRV	GATATC	1 cut(s)	157
FaeI	CATG	3 cut(s)	85, 482, 518
FaqI	GGGAC	2 cut(s)	134, 452
FatI	CATG	3 cut(s)	81, 478, 514
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	2 cut(s)	18, 213
GluI	GCNGC	1 cut(s)	405
HaeIII	GGCC	4 cut(s)	43, 146, 263, 560
HapII	CCGG	2 cut(s)	78, 130
HgaI	GACGC	2 cut(s)	199, 509
Hin1II	CATG	3 cut(s)	85, 482, 518
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	2 cut(s)	78, 130
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	2 cut(s)	389, 437
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	245, 335
HpyCH4III	ACNGT	2 cut(s)	550, 567
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	5 cut(s)	65, 278, 422, 489, 571
HpyF10VI	GCNNNNNNNGC	4 cut(s)	410, 419, 462, 466
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	3 cut(s)	85, 482, 518
Kzo9I	GATC	1 cut(s)	391
LpnPI	CCDG	8 cut(s)	91, 143, 233, 260, 288, 374, 470, 475
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	2 cut(s)	391, 478
MaeI	CTAG	2 cut(s)	18, 213
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	6 cut(s)	236, 347, 350, 437, 440, 566
MfeI	CAATTG	2 cut(s)	219, 291
MflI	RGATCY	1 cut(s)	391
MluCI	AATT	3 cut(s)	219, 291, 447
MnlI	CCTC	3 cut(s)	33, 424, 550
MseI	TTAA	2 cut(s)	450, 504
MslI	CAYNNNNRTG	1 cut(s)	86
MspI	CCGG	2 cut(s)	78, 130
MspR9I	CCNGG	2 cut(s)	131, 248
MunI	CAATTG	2 cut(s)	219, 291
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	4 cut(s)	410, 419, 462, 466
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	3 cut(s)	85, 482, 518
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	169
PceI	AGGCCT	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	450
PsiI	TTATAA	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	450, 504
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	1 cut(s)	391
ScrFI	CCNGG	2 cut(s)	131, 248
SetI	ASST	4 cut(s)	30, 100, 270, 346
SfaNI	GCATC	2 cut(s)	391, 478
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	219, 291, 447
SseBI	AGGCCT	1 cut(s)	43
SspMI	CTAG	2 cut(s)	18, 213
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	2 cut(s)	129, 246
TaaI	ACNGT	2 cut(s)	550, 567
TaiI	ACGT	1 cut(s)	100
TasI	AATT	3 cut(s)	219, 291, 447
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	2 cut(s)	450, 504
Tru9I	TTAA	2 cut(s)	450, 504
TscAI	CASTG	2 cut(s)	141, 415
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	169
TspRI	CASTG	2 cut(s)	141, 415
VspI	ATTAAT	1 cut(s)	450
XspI	CTAG	2 cut(s)	18, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.