FvH4_2g25320

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001867
Physical Location & Seq
Forward (+)
20591284 .. 20593112
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25320.t1

Sequence Viewer

Length: 951 bp
ATGGCTCCTTCAACCTCTCATTTTCTCAGCACTGCATTCCTTGTTCTTGTTTCTCTAAACCTCTGCCTTGTTCATGAGGTCATGACTCAGACTCCCAACTGCTTGCCCCTCCCGAACGTTACTGATGCTGATCGCCTTCAGTTTGCGTTGAACTTAGAATTCTTAGAAGCTGAGTTTTTCTTGTTTGGCGCTCTTGGAACAGGGCTCGACAGTATCAATCCGAATCTGGCCGGAGGCGGTCCTCCGCCTTTCGGTGCGCAGAGAGCTTTGCTCGACCCCGTCGTTGCTCGAATCATGGAGGAGTTCGGTTATCAACAAGTTGGTCACATCAGAGCGATCATCGATAAATTTGGAGGGATTCCGAGGCCTCTGTTAAACATCAGCCGTGAAAACTTTGCGAGAGGTTTTAACGGCATAGTGGGTTTCAACCTGATCCCTCCCTTTAATCCCTATGCAAACACACTCAATTATCTTCTAGCAGCCTATTCAATCCCTTATATTGCACTTGGAGGCTATGTTGGCAGAATCCGTAACCTTACCACTATTGATAATCGTGCGTTGGCTGCATCACTTTTGGGGATAGTGGCTGGACAAGATGCGGTAATACGTACATTACTGTATACAAGAGCCAACCAGTTCGTACCTCCATATCCGCTCACAGTGGCCGAGTTCACAAATCGTATTTCAGCGCGTCGGAACTTCTTCGGCGGGTGTGGCAACAAAGACGAAGGCATCCTGTTACCAGACACCACGCTCGGGGCTGAGAACCGGACGACAAGTAACATCCTATCGGCGGATTTTTATTCGGTGGCGTACACCAGAAGACCAGTTGAGATCTTGAGGATTGTGTATGGAGGCAATGAATCTGTGCCCGGCGGATTTTTCCCTCAAGGTGCTAATGGAAACATTGCAAAGCGCTACCTCAATGGTGGCGCCAGCTCAATAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

317

Amino Acids

34.16

Weight (kDa)

7.71

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 41 - 207 7.5e-28 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 932
AccBSI CCGCTC 1 cut(s) 655
AccI GTMKAC 1 cut(s) 620
AccII CGCG 1 cut(s) 691
AciI CCGC 7 cut(s) 237, 245, 599, 653, 708, 794, 876
AclI AACGTT 1 cut(s) 117
AclWI GGATC 1 cut(s) 427
AcoI YGGCCR 2 cut(s) 228, 663
AcsI RAATTY 2 cut(s) 158, 347
AcuI CTGAAG 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 933
AfaI GTAC 3 cut(s) 610, 642, 815
AfeI AGCGCT 1 cut(s) 917
AfiI CCNNNNNNNGG 3 cut(s) 251, 756, 793
AgsI TTSAA 4 cut(s) 12, 151, 427, 489
AluBI AGCT 3 cut(s) 170, 266, 939
AluI AGCT 3 cut(s) 170, 266, 939
AlwI GGATC 1 cut(s) 427
Ama87I CYCGRG 1 cut(s) 755
Aor51HI AGCGCT 1 cut(s) 917
AoxI GGCC 3 cut(s) 228, 365, 663
ApeKI GCWGC 2 cut(s) 479, 563
ApoI RAATTY 2 cut(s) 158, 347
Asp700I GAANNNNTTC 1 cut(s) 701
AspLEI GCGC 5 cut(s) 191, 259, 691, 918, 935
AspS9I GGNCC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 873
AvaI CYCGRG 1 cut(s) 755
AvaII GGWCC 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 873
BanI GGYRCC 1 cut(s) 932
BanII GRGCYC 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 829
BbvI GCAGC 2 cut(s) 491, 550
BceAI ACGGC 2 cut(s) 369, 427
BcnI CCSGG 1 cut(s) 873
BfaI CTAG 1 cut(s) 476
BfoI RGCGCY 3 cut(s) 192, 919, 936
BglII AGATCT 1 cut(s) 834
BisI GCNGC 2 cut(s) 480, 564
BlsI GCNGC 2 cut(s) 481, 565
Bme1390I CCNGG 1 cut(s) 873
Bme18I GGWCC 1 cut(s) 239
BmeT110I CYCGRG 1 cut(s) 755
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 6, 934
BmrFI CCNGG 1 cut(s) 873
BmsI GCATC 4 cut(s) 115, 575, 586, 741
BpiI GAAGAC 1 cut(s) 829
BplI GAGNNNNNCTC 2 cut(s) 255, 287
BpuEI CTTGAG 2 cut(s) 859, 873
BpuMI CCSGG 1 cut(s) 873
Bsa29I ATCGAT 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 608
BsaBI GATNNNNATC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 933
BsaJI CCNNGG 1 cut(s) 362
BsaWI WCCGGW 1 cut(s) 768
BsaXI ACNNNNNCTCC 4 cut(s) 76, 106, 501, 531
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 756, 793
Bse1I ACTGG 2 cut(s) 634, 827
Bse3DI GCAATG 2 cut(s) 865, 906
Bse8I GATNNNNATC 1 cut(s) 129
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 2 cut(s) 732, 783
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 3 cut(s) 251, 756, 793
BseMI GCAATG 2 cut(s) 865, 906
BseMII CTCAG 4 cut(s) 40, 101, 162, 753
BseNI ACTGG 2 cut(s) 634, 827
BseRI GAGGAG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 873
BseXI GCAGC 2 cut(s) 491, 550
Bsh1236I CGCG 1 cut(s) 691
BshFI GGCC 3 cut(s) 230, 367, 665
BshNI GGYRCC 1 cut(s) 932
BshVI ATCGAT 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 755
BsiSI CCGG 3 cut(s) 231, 769, 873
BslI CCNNNNNNNGG 3 cut(s) 251, 756, 793
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 3 cut(s) 230, 367, 665
BsoBI CYCGRG 1 cut(s) 755
Bsp1286I GDGCHC 2 cut(s) 207, 873
Bsp143I GATC 4 cut(s) 130, 336, 432, 834
BspACI CCGC 7 cut(s) 237, 245, 599, 653, 708, 794, 876
BspANI GGCC 3 cut(s) 230, 367, 665
BspCNI CTCAG 4 cut(s) 39, 100, 163, 754
BspDI ATCGAT 1 cut(s) 342
BspFNI CGCG 1 cut(s) 691
BspHI TCATGA 2 cut(s) 73, 81
BspLI GGNNCC 2 cut(s) 6, 934
BspPI GGATC 1 cut(s) 427
BspT107I GGYRCC 1 cut(s) 932
BsrBI CCGCTC 1 cut(s) 655
BsrDI GCAATG 2 cut(s) 865, 906
BsrI ACTGG 2 cut(s) 634, 827
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 4 cut(s) 130, 336, 432, 834
BssNAI GTATAC 1 cut(s) 621
BssNI GRCGYC 1 cut(s) 933
Bst1107I GTATAC 1 cut(s) 621
Bst4CI ACNGT 3 cut(s) 212, 618, 661
BstACI GRCGYC 1 cut(s) 933
BstBAI YACGTR 1 cut(s) 608
BstC8I GCNNGC 2 cut(s) 104, 937
BstDEI CTNAG 6 cut(s) 26, 87, 154, 163, 171, 762
BstF5I GGATG 2 cut(s) 732, 783
BstFNI CGCG 1 cut(s) 691
BstH2I RGCGCY 3 cut(s) 192, 919, 936
BstHHI GCGC 5 cut(s) 191, 259, 691, 918, 935
BstKTI GATC 4 cut(s) 133, 339, 435, 837
BstMBI GATC 4 cut(s) 130, 336, 432, 834
BstMWI GCNNNNNNNGC 4 cut(s) 263, 519, 563, 714
BstSCI CCNGG 1 cut(s) 871
BstSLI GKGCMC 1 cut(s) 873
BstSNI TACGTA 1 cut(s) 608
BstUI CGCG 1 cut(s) 691
BstV1I GCAGC 2 cut(s) 491, 550
BstV2I GAAGAC 1 cut(s) 829
BstX2I RGATCY 1 cut(s) 834
BstYI RGATCY 1 cut(s) 834
BstZ17I GTATAC 1 cut(s) 621
Bsu15I ATCGAT 1 cut(s) 342
BsuRI GGCC 3 cut(s) 230, 367, 665
BsuTUI ATCGAT 1 cut(s) 342
BtsCI GGATG 2 cut(s) 732, 783
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 30, 666
Cac8I GCNNGC 2 cut(s) 104, 937
CciI TCATGA 2 cut(s) 73, 81
CfoI GCGC 5 cut(s) 191, 259, 691, 918, 935
Cfr13I GGNCC 1 cut(s) 239
ClaI ATCGAT 1 cut(s) 342
CseI GACGC 1 cut(s) 680
Csp6I GTAC 3 cut(s) 609, 641, 814
CviAII CATG 3 cut(s) 74, 82, 295
CviQI GTAC 3 cut(s) 609, 641, 814
DdeI CTNAG 6 cut(s) 26, 87, 154, 163, 171, 762
DinI GGCGCC 1 cut(s) 934
DpnI GATC 4 cut(s) 132, 338, 434, 836
DpnII GATC 4 cut(s) 130, 336, 432, 834
EaeI YGGCCR 2 cut(s) 228, 663
EciI GGCGGA 3 cut(s) 234, 809, 891
Eco105I TACGTA 1 cut(s) 608
Eco147I AGGCCT 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 239
Eco47III AGCGCT 1 cut(s) 917
Eco57I CTGAAG 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 755
EcoRI GAATTC 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 207
EgeI GGCGCC 1 cut(s) 934
EheI GGCGCC 1 cut(s) 934
FaeI CATG 3 cut(s) 77, 85, 298
FatI CATG 3 cut(s) 73, 81, 294
FauI CCCGC 1 cut(s) 701
FblI GTMKAC 1 cut(s) 620
Fnu4HI GCNGC 2 cut(s) 480, 564
FokI GGATG 2 cut(s) 719, 770
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 2 cut(s) 480, 564
FspBI CTAG 1 cut(s) 476
FspI TGCGCA 1 cut(s) 258
GlaI GCGC 5 cut(s) 190, 258, 690, 917, 934
GluI GCNGC 2 cut(s) 480, 564
HaeII RGCGCY 3 cut(s) 192, 919, 936
HaeIII GGCC 3 cut(s) 230, 367, 665
HapII CCGG 3 cut(s) 231, 769, 873
HgaI GACGC 1 cut(s) 680
HhaI GCGC 5 cut(s) 191, 259, 691, 918, 935
Hin1I GRCGYC 1 cut(s) 933
Hin1II CATG 3 cut(s) 77, 85, 298
Hin6I GCGC 5 cut(s) 189, 257, 689, 916, 933
HinP1I GCGC 5 cut(s) 189, 257, 689, 916, 933
HinfI GANTC 7 cut(s) 85, 91, 223, 291, 358, 525, 863
HpaII CCGG 3 cut(s) 231, 769, 873
Hpy166II GTNNAC 3 cut(s) 621, 672, 816
Hpy188I TCNGA 5 cut(s) 90, 222, 332, 363, 696
Hpy188III TCNNGA 4 cut(s) 74, 82, 112, 838
Hpy8I GTNNAC 3 cut(s) 621, 672, 816
Hpy99I CGWCG 2 cut(s) 284, 696
HpyAV CCTTC 3 cut(s) 18, 146, 722
HpyCH4III ACNGT 3 cut(s) 212, 618, 661
HpyCH4IV ACGT 2 cut(s) 117, 607
HpyCH4V TGCA 5 cut(s) 35, 455, 503, 566, 911
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 519, 563, 714
HpyF3I CTNAG 6 cut(s) 26, 87, 154, 163, 171, 762
HpySE526I ACGT 2 cut(s) 117, 607
Hsp92I GRCGYC 1 cut(s) 933
Hsp92II CATG 3 cut(s) 77, 85, 298
HspAI GCGC 5 cut(s) 189, 257, 689, 916, 933
KasI GGCGCC 1 cut(s) 932
Kzo9I GATC 4 cut(s) 130, 336, 432, 834
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 2 cut(s) 491, 550
LweI GCATC 4 cut(s) 115, 575, 586, 741
MaeI CTAG 1 cut(s) 476
MaeII ACGT 2 cut(s) 117, 607
MaeIII GTNAC 5 cut(s) 118, 323, 530, 738, 779
MalI GATC 4 cut(s) 132, 338, 434, 836
MbiI CCGCTC 1 cut(s) 655
MboI GATC 4 cut(s) 130, 336, 432, 834
MboII GAAGA 3 cut(s) 464, 694, 834
MflI RGATCY 1 cut(s) 834
MhlI GDGCHC 2 cut(s) 207, 873
MluCI AATT 3 cut(s) 158, 347, 466
Mly113I GGCGCC 1 cut(s) 933
MlyI GAGTC 2 cut(s) 79, 85
MmeI TCCRAC 1 cut(s) 674
MroXI GAANNNNTTC 1 cut(s) 701
MseI TTAA 3 cut(s) 374, 408, 444
MspI CCGG 3 cut(s) 231, 769, 873
MspR9I CCNGG 1 cut(s) 873
Mva1269I GAATGC 1 cut(s) 35
MvnI CGCG 1 cut(s) 691
MwoI GCNNNNNNNGC 4 cut(s) 263, 519, 563, 714
NarI GGCGCC 1 cut(s) 933
NciI CCSGG 1 cut(s) 873
NdeII GATC 4 cut(s) 130, 336, 432, 834
NlaIII CATG 3 cut(s) 77, 85, 298
NlaIV GGNNCC 2 cut(s) 6, 934
NmeAIII GCCGAG 1 cut(s) 691
NmuCI GTSAC 1 cut(s) 323
NsbI TGCGCA 1 cut(s) 258
PagI TCATGA 2 cut(s) 73, 81
PceI AGGCCT 1 cut(s) 367
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PctI GAATGC 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 701
PfeI GAWTC 5 cut(s) 223, 291, 358, 525, 863
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 481, 565
PleI GAGTC 2 cut(s) 79, 85
PluTI GGCGCC 1 cut(s) 936
PpsI GAGTC 2 cut(s) 79, 85
Ppu21I YACGTR 1 cut(s) 608
Psp1406I AACGTT 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 6, 934
PspPI GGNCC 1 cut(s) 239
PsuI RGATCY 1 cut(s) 834
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 3 cut(s) 610, 642, 815
RsaNI GTAC 3 cut(s) 609, 641, 814
SaqAI TTAA 3 cut(s) 374, 408, 444
SatI GCNGC 2 cut(s) 480, 564
Sau3AI GATC 4 cut(s) 130, 336, 432, 834
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 2 cut(s) 79, 85
ScrFI CCNGG 1 cut(s) 873
SduI GDGCHC 2 cut(s) 207, 873
SfaNI GCATC 4 cut(s) 115, 575, 586, 741
SfoI GGCGCC 1 cut(s) 934
SinI GGWCC 1 cut(s) 239
SmlI CTYRAG 2 cut(s) 838, 888
SmoI CTYRAG 2 cut(s) 838, 888
SnaBI TACGTA 1 cut(s) 608
Sse9I AATT 3 cut(s) 158, 347, 466
SseBI AGGCCT 1 cut(s) 367
SsiI CCGC 7 cut(s) 237, 245, 599, 653, 708, 794, 876
SspDI GGCGCC 1 cut(s) 932
SspMI CTAG 1 cut(s) 476
StuI AGGCCT 1 cut(s) 367
StyD4I CCNGG 1 cut(s) 871
TaaI ACNGT 3 cut(s) 212, 618, 661
TaiI ACGT 2 cut(s) 120, 610
TaqI TCGA 4 cut(s) 207, 273, 289, 342
TasI AATT 3 cut(s) 158, 347, 466
TfiI GAWTC 5 cut(s) 223, 291, 358, 525, 863
Tru1I TTAA 3 cut(s) 374, 408, 444
Tru9I TTAA 3 cut(s) 374, 408, 444
TscAI CASTG 2 cut(s) 37, 666
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 2 cut(s) 479, 563
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 2 cut(s) 62, 876
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 2 cut(s) 37, 666
Tth111I GACNNNGTC 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 2 cut(s) 158, 347
XmiI GTMKAC 1 cut(s) 620
XmnI GAANNNNTTC 1 cut(s) 701
XspI CTAG 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.