AT4G01560

Brix

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002361
Physical Location & Seq
Reverse (-)
676982 .. 679276
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01560.1

Sequence Viewer

Length: 1032 bp
ATGGGGTTCAAGAGGAAGAAAGATGATGGTGATGGTGAGGAAATGGAATCTGATGTTCGTGGAAAGTCTACTTTCAGTGGGGGTGAGAAGAGGAATGTGATACTTCCTTCGATGATTAAGAACAAAGATAAGAGATCAAAAGTGTATGCGAAGCAGAAGCATGAGAAGAAATTGGAGAAGCAGAAGAAGATTAGAGCTCGTGATGCTGCTGAGAAACGAGCTTTAGAGCTTGGAGAAGAGCCTCCACAAAAGATGATTCCGAAGACGATTGAGAATACAAGAGAATCTGATGAAACTGTTTGCAGACCTGACGATGAAGAATTGTTTGCGGATATTGATGCTGATGAGTTTAATCCAGTTCTGAGACGTGAGATTGCACCTAAGGTCTTGCTCACAACATGTCGTTTCAATTCCACTAGAGGACCTGCTTTAATATCTGAGTTGCTTTCGGTGATACCAAACTCTCATTATCAAAAGAGAGGAACCTATGATTTGAAGAAGATTGTAGAATACGCAACGAAGAAAGATTTTACATCTCTTATTGTTGTTCATACAAATCGTAGAGAACCTGATGCGCTTCTTATCATCGGTTTGCCAAATGGTCCTACTGCTCATTTCAAATTGTCAAATCTTGTTCTAAGGAAGGATATTAAGAATCACGGAAATCCTACAAGCCATCAACCAGAACTGGTTTTGAATAACTTTACAACGCGTTTAGGGAATCGTGTTGGGAGATTTTTTCAATCACTCTTCCCTCCGGATCCTAATTTCCGTGGTAGGAGAGTTGTAACATTCCACAACCAGCGTGACTTTATATTTTTCAGACATCACCGTTACATATTTGAGACAAAGGAAAGCAAGAGTGATAAAGGAAAAGAAGAGACAATAAAACCTCGTCTTCAGGAATGCGGTCCTCGATTCACGCTTAAGCTAGTTACTCTACAGCATGGAACTTTTGACACCAAAGGTGGAGAATTTGAATGGGTTCATAAGCCTGAAATGGACACGAGCAGGAGAAGGTTCTTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

343

Amino Acids

39.85

Weight (kDa)

9.68

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 137 - 312 5.6e-35 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1030
Acc36I ACCTGC 1 cut(s) 433
AccI GTMKAC 1 cut(s) 68
AccII CGCG 1 cut(s) 712
AccIII TCCGGA 1 cut(s) 757
AciI CCGC 2 cut(s) 329, 909
AclWI GGATC 2 cut(s) 755, 768
AcsI RAATTY 1 cut(s) 974
AcuI CTGAAG 1 cut(s) 884
AflII CTTAAG 1 cut(s) 926
AflIII ACRYGT 2 cut(s) 398, 710
AgsI TTSAA 7 cut(s) 10, 409, 496, 619, 697, 743, 980
AjiI CACGTC 1 cut(s) 368
AluBI AGCT 4 cut(s) 197, 221, 229, 931
AluI AGCT 4 cut(s) 197, 221, 229, 931
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 3 cut(s) 358, 839, 875
AlwI GGATC 2 cut(s) 755, 768
Aor13HI TCCGGA 1 cut(s) 757
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 974
Asp700I GAANNNNTTC 1 cut(s) 984
AspLEI GCGC 1 cut(s) 577
AspS9I GGNCC 3 cut(s) 422, 602, 911
AsuHPI GGTGA 5 cut(s) 41, 47, 95, 463, 821
AvaII GGWCC 3 cut(s) 422, 602, 911
AxyI CCTNAGG 1 cut(s) 381
BamHI GGATCC 1 cut(s) 760
BanII GRGCYC 1 cut(s) 199
BauI CACGAG 2 cut(s) 198, 1006
BbsI GAAGAC 2 cut(s) 269, 890
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 193
BccI CCATC 3 cut(s) 20, 26, 684
BcoDI GTCTC 3 cut(s) 358, 839, 875
BfaI CTAG 2 cut(s) 417, 932
BfmI CTRYAG 1 cut(s) 941
BfrI CTTAAG 1 cut(s) 926
BfuAI ACCTGC 1 cut(s) 433
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme18I GGWCC 3 cut(s) 422, 602, 911
BmgBI CACGTC 1 cut(s) 368
BmgT120I GGNCC 3 cut(s) 422, 602, 911
BmiI GGNNCC 2 cut(s) 484, 762
BmsI GCATC 3 cut(s) 193, 328, 562
BpiI GAAGAC 2 cut(s) 269, 890
BsaJI CCNNGG 1 cut(s) 772
BsaWI WCCGGW 1 cut(s) 757
Bse1I ACTGG 2 cut(s) 356, 693
Bse21I CCTNAGG 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 757
BseDI CCNNGG 1 cut(s) 772
BseMII CTCAG 3 cut(s) 201, 353, 429
BseNI ACTGG 2 cut(s) 356, 693
BseXI GCAGC 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 712
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 758
BsmAI GTCTC 3 cut(s) 358, 839, 875
BsmBI CGTCTC 1 cut(s) 358
BsmI GAATGC 1 cut(s) 911
Bsp1286I GDGCHC 1 cut(s) 199
Bsp13I TCCGGA 1 cut(s) 757
Bsp143I GATC 2 cut(s) 134, 760
BspACI CCGC 2 cut(s) 329, 909
BspCNI CTCAG 3 cut(s) 202, 354, 430
BspEI TCCGGA 1 cut(s) 757
BspFNI CGCG 1 cut(s) 712
BspLI GGNNCC 2 cut(s) 484, 762
BspMI ACCTGC 1 cut(s) 433
BspPI GGATC 2 cut(s) 755, 768
BspQI GCTCTTC 1 cut(s) 231
BspTI CTTAAG 1 cut(s) 926
BsrI ACTGG 2 cut(s) 356, 693
BssECI CCNNGG 1 cut(s) 772
BssMI GATC 2 cut(s) 134, 760
BssSI CACGAG 2 cut(s) 198, 1006
Bst2BI CACGAG 2 cut(s) 198, 1006
Bst4CI ACNGT 2 cut(s) 298, 833
Bst6I CTCTTC 4 cut(s) 83, 231, 755, 873
BstAFI CTTAAG 1 cut(s) 926
BstDEI CTNAG 5 cut(s) 210, 362, 381, 438, 638
BstDSI CCRYGG 1 cut(s) 772
BstFNI CGCG 1 cut(s) 712
BstHHI GCGC 1 cut(s) 577
BstKTI GATC 2 cut(s) 137, 763
BstMAI GTCTC 3 cut(s) 358, 839, 875
BstMBI GATC 2 cut(s) 134, 760
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 402
BstSFI CTRYAG 1 cut(s) 941
BstUI CGCG 1 cut(s) 712
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 2 cut(s) 269, 890
BstX2I RGATCY 1 cut(s) 760
BstYI RGATCY 1 cut(s) 760
Bsu36I CCTNAGG 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 772
BtrI CACGTC 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 82
BveI ACCTGC 1 cut(s) 433
CfoI GCGC 1 cut(s) 577
Cfr13I GGNCC 3 cut(s) 422, 602, 911
CviAII CATG 3 cut(s) 161, 399, 947
CviJI RGCY 7 cut(s) 197, 221, 229, 241, 675, 931, 994
CviKI_1 RGCY 7 cut(s) 197, 221, 229, 241, 675, 931, 994
DdeI CTNAG 5 cut(s) 210, 362, 381, 438, 638
DpnI GATC 2 cut(s) 136, 762
DpnII GATC 2 cut(s) 134, 760
Eam1104I CTCTTC 4 cut(s) 83, 231, 755, 873
EarI CTCTTC 4 cut(s) 83, 231, 755, 873
Ecl136II GAGCTC 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 199
Eco47I GGWCC 3 cut(s) 422, 602, 911
Eco53kI GAGCTC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 884
Eco81I CCTNAGG 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 422
EcoT38I GRGCYC 1 cut(s) 199
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 3 cut(s) 164, 402, 950
FatI CATG 3 cut(s) 160, 398, 946
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 207
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 2 cut(s) 417, 932
GlaI GCGC 1 cut(s) 576
GluI GCNGC 1 cut(s) 207
HapII CCGG 1 cut(s) 758
HhaI GCGC 1 cut(s) 577
Hin1II CATG 3 cut(s) 164, 402, 950
Hin6I GCGC 1 cut(s) 575
HinP1I GCGC 1 cut(s) 575
HinfI GANTC 6 cut(s) 47, 256, 284, 655, 721, 918
HpaII CCGG 1 cut(s) 758
HphI GGTGA 5 cut(s) 41, 47, 95, 463, 821
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 6 cut(s) 52, 261, 289, 363, 439, 824
Hpy188III TCNNGA 4 cut(s) 10, 200, 758, 902
Hpy8I GTNNAC 1 cut(s) 69
HpyAV CCTTC 3 cut(s) 117, 637, 1011
HpyCH4III ACNGT 2 cut(s) 298, 833
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 2 cut(s) 303, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 5 cut(s) 210, 362, 381, 438, 638
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 3 cut(s) 164, 402, 950
HspAI GCGC 1 cut(s) 575
Kpn2I TCCGGA 1 cut(s) 757
Kzo9I GATC 2 cut(s) 134, 760
LguI GCTCTTC 1 cut(s) 231
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 3 cut(s) 193, 328, 562
MaeI CTAG 2 cut(s) 417, 932
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 4 cut(s) 787, 806, 833, 934
MalI GATC 2 cut(s) 136, 762
MboI GATC 2 cut(s) 134, 760
MflI RGATCY 1 cut(s) 760
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 6 cut(s) 170, 320, 409, 620, 766, 974
MluI ACGCGT 1 cut(s) 710
MnlI CCTC 9 cut(s) 6, 31, 84, 252, 413, 473, 765, 903, 924
MroI TCCGGA 1 cut(s) 757
MroXI GAANNNNTTC 1 cut(s) 984
MseI TTAA 5 cut(s) 117, 351, 431, 651, 927
MspCI CTTAAG 1 cut(s) 926
MspI CCGG 1 cut(s) 758
Mva1269I GAATGC 1 cut(s) 911
MvnI CGCG 1 cut(s) 712
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 2 cut(s) 134, 760
NlaIII CATG 3 cut(s) 164, 402, 950
NlaIV GGNNCC 2 cut(s) 484, 762
NmuCI GTSAC 1 cut(s) 806
NspI RCATGY 1 cut(s) 402
PciI ACATGT 1 cut(s) 398
PciSI GCTCTTC 1 cut(s) 231
PctI GAATGC 1 cut(s) 911
PdmI GAANNNNTTC 1 cut(s) 984
PfeI GAWTC 6 cut(s) 47, 256, 284, 655, 721, 918
PkrI GCNGC 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 422
PscI ACATGT 1 cut(s) 398
PsiI TTATAA 1 cut(s) 1030
Psp124BI GAGCTC 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 422
PspN4I GGNNCC 2 cut(s) 484, 762
PspPI GGNCC 3 cut(s) 422, 602, 911
PspPPI RGGWCCY 1 cut(s) 422
PsuI RGATCY 1 cut(s) 760
SacI GAGCTC 1 cut(s) 199
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 5 cut(s) 117, 351, 431, 651, 927
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 2 cut(s) 134, 760
Sau96I GGNCC 3 cut(s) 422, 602, 911
SduI GDGCHC 1 cut(s) 199
SfaNI GCATC 3 cut(s) 193, 328, 562
SfcI CTRYAG 1 cut(s) 941
SinI GGWCC 3 cut(s) 422, 602, 911
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
Sse9I AATT 6 cut(s) 170, 320, 409, 620, 766, 974
SsiI CCGC 2 cut(s) 329, 909
SspMI CTAG 2 cut(s) 417, 932
SstI GAGCTC 1 cut(s) 199
TaaI ACNGT 2 cut(s) 298, 833
TaiI ACGT 1 cut(s) 370
TaqI TCGA 2 cut(s) 110, 916
TasI AATT 6 cut(s) 170, 320, 409, 620, 766, 974
TfiI GAWTC 6 cut(s) 47, 256, 284, 655, 721, 918
Tru1I TTAA 5 cut(s) 117, 351, 431, 651, 927
Tru9I TTAA 5 cut(s) 117, 351, 431, 651, 927
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 1 cut(s) 806
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 4 cut(s) 306, 330, 539, 977
TspGWI ACGGA 2 cut(s) 675, 761
TspRI CASTG 1 cut(s) 82
Vha464I CTTAAG 1 cut(s) 926
VpaK11BI GGWCC 3 cut(s) 422, 602, 911
XapI RAATTY 1 cut(s) 974
XceI RCATGY 1 cut(s) 402
XmiI GTMKAC 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 984
XspI CTAG 2 cut(s) 417, 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.