Ribosome production factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G01560 |
| fragaria_vesca | FvH4_7g18100 FvH4_7g18130 |
| malus_domestica | MD01G1095300.v1.1 MD07G1164400.v1.1 |
| prunus_persica | Prupe.2G203400_v2.0.a1 |
| pyrus_communis | pycom01g11760 pycom07g15940 |
| rosa_chinensis | RchiOBHm_Chr1g0321231 RchiOBHm_Chr1g0346391 RchiOBHm_Chr1g0361751 RchiOBHm_Chr2g0110161 RchiOBHm_Chr3g0479951 RchiOBHm_Chr3g0493911 RchiOBHm_Chr4g0406331 RchiOBHm_Chr5g0043791 RchiOBHm_Chr5g0052991 RchiOBHm_Chr5g0055421 RchiOBHm_Chr6g0259761 RchiOBHm_Chr7g0204491 RchiOBHm_Chr7g0219071 RchiOBHm_Chr7g0228521 |
| rosa_laevigata | RLG00000027705 |
| rosa_multiflora | Rmu_sc0005733.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00294720 |
| rosa_rugosa | Rorug01G0291200 |
| rosa_samantha | Rh1AG105100 Rh1AG301600 Rh1BG264500 Rh1CG282900 Rh1DG144800 Rh1DG294500 Rh5BG300200 Rh5BG351900 Rh5DG309100 Rh5DG368200 Rh6AG038900 Rh6AG080500 Rh6CG040900 |
| rosa_wichuraiana | Rw1G026720 Rw5G034050 Rw6G003520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 547 |
| AccII | CGCG | 1 cut(s) | 502 |
| AciI | CCGC | 1 cut(s) | 576 |
| AclWI | GGATC | 3 cut(s) | 49, 380, 560 |
| AcsI | RAATTY | 2 cut(s) | 128, 283 |
| AcuI | CTGAAG | 2 cut(s) | 456, 504 |
| AfaI | GTAC | 2 cut(s) | 71, 404 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 162, 575 |
| AgsI | TTSAA | 2 cut(s) | 97, 413 |
| AluBI | AGCT | 4 cut(s) | 223, 232, 434, 470 |
| AluI | AGCT | 4 cut(s) | 223, 232, 434, 470 |
| Alw26I | GTCTC | 1 cut(s) | 416 |
| AlwI | GGATC | 3 cut(s) | 49, 380, 560 |
| ApoI | RAATTY | 2 cut(s) | 128, 283 |
| AseI | ATTAAT | 1 cut(s) | 258 |
| AspLEI | GCGC | 2 cut(s) | 502, 504 |
| AspS9I | GGNCC | 3 cut(s) | 23, 203, 518 |
| AsuC2I | CCSGG | 1 cut(s) | 164 |
| AsuHPI | GGTGA | 1 cut(s) | 64 |
| AvaII | GGWCC | 3 cut(s) | 23, 203, 518 |
| BclI | TGATCA | 1 cut(s) | 540 |
| BcnI | CCSGG | 1 cut(s) | 164 |
| BcoDI | GTCTC | 1 cut(s) | 416 |
| BfaI | CTAG | 1 cut(s) | 570 |
| BfmI | CTRYAG | 1 cut(s) | 548 |
| BmcAI | AGTACT | 1 cut(s) | 71 |
| Bme1390I | CCNGG | 1 cut(s) | 164 |
| Bme18I | GGWCC | 3 cut(s) | 23, 203, 518 |
| BmgT120I | GGNCC | 3 cut(s) | 23, 203, 518 |
| BmiI | GGNNCC | 2 cut(s) | 24, 168 |
| BmrFI | CCNGG | 1 cut(s) | 164 |
| BmsI | GCATC | 2 cut(s) | 163, 352 |
| BpuEI | CTTGAG | 1 cut(s) | 258 |
| BpuMI | CCSGG | 1 cut(s) | 164 |
| BsaJI | CCNNGG | 1 cut(s) | 456 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 572, 602 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 162, 575 |
| BseDI | CCNNGG | 1 cut(s) | 456 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 162, 575 |
| BsePI | GCGCGC | 1 cut(s) | 500 |
| Bsh1236I | CGCG | 1 cut(s) | 502 |
| BsiSI | CCGG | 2 cut(s) | 163, 340 |
| BslFI | GGGAC | 1 cut(s) | 571 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 162, 575 |
| BsmAI | GTCTC | 1 cut(s) | 416 |
| BsmFI | GGGAC | 1 cut(s) | 571 |
| Bsp1407I | TGTACA | 1 cut(s) | 402 |
| Bsp143I | GATC | 4 cut(s) | 54, 385, 540, 565 |
| BspACI | CCGC | 1 cut(s) | 576 |
| BspFNI | CGCG | 1 cut(s) | 502 |
| BspLI | GGNNCC | 2 cut(s) | 24, 168 |
| BspPI | GGATC | 3 cut(s) | 49, 380, 560 |
| BsrGI | TGTACA | 1 cut(s) | 402 |
| BssECI | CCNNGG | 1 cut(s) | 456 |
| BssHII | GCGCGC | 1 cut(s) | 500 |
| BssMI | GATC | 4 cut(s) | 54, 385, 540, 565 |
| BssT1I | CCWWGG | 1 cut(s) | 456 |
| Bst4CI | ACNGT | 1 cut(s) | 69 |
| BstAUI | TGTACA | 1 cut(s) | 402 |
| BstC8I | GCNNGC | 1 cut(s) | 502 |
| BstFNI | CGCG | 1 cut(s) | 502 |
| BstHHI | GCGC | 2 cut(s) | 502, 504 |
| BstKTI | GATC | 4 cut(s) | 57, 388, 543, 568 |
| BstMAI | GTCTC | 1 cut(s) | 416 |
| BstMBI | GATC | 4 cut(s) | 54, 385, 540, 565 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 229, 362 |
| BstSCI | CCNGG | 1 cut(s) | 162 |
| BstSFI | CTRYAG | 1 cut(s) | 548 |
| BstUI | CGCG | 1 cut(s) | 502 |
| BtsI | GCAGTG | 1 cut(s) | 388 |
| BtsIMutI | CAGTG | 1 cut(s) | 388 |
| Cac8I | GCNNGC | 1 cut(s) | 502 |
| CfoI | GCGC | 2 cut(s) | 502, 504 |
| Cfr13I | GGNCC | 3 cut(s) | 23, 203, 518 |
| CseI | GACGC | 1 cut(s) | 482 |
| Csp6I | GTAC | 2 cut(s) | 70, 403 |
| CviJI | RGCY | 5 cut(s) | 192, 223, 232, 434, 470 |
| CviKI_1 | RGCY | 5 cut(s) | 192, 223, 232, 434, 470 |
| CviQI | GTAC | 2 cut(s) | 70, 403 |
| DpnI | GATC | 4 cut(s) | 56, 387, 542, 567 |
| DpnII | GATC | 4 cut(s) | 54, 385, 540, 565 |
| Eco130I | CCWWGG | 1 cut(s) | 456 |
| Eco32I | GATATC | 1 cut(s) | 250 |
| Eco47I | GGWCC | 3 cut(s) | 23, 203, 518 |
| Eco57I | CTGAAG | 2 cut(s) | 456, 504 |
| EcoO109I | RGGNCCY | 1 cut(s) | 23 |
| EcoRV | GATATC | 1 cut(s) | 250 |
| EcoT14I | CCWWGG | 1 cut(s) | 456 |
| ErhI | CCWWGG | 1 cut(s) | 456 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 70, 102 |
| FaqI | GGGAC | 1 cut(s) | 571 |
| FauI | CCCGC | 1 cut(s) | 569 |
| FbaI | TGATCA | 1 cut(s) | 540 |
| FblI | GTMKAC | 1 cut(s) | 547 |
| FspBI | CTAG | 1 cut(s) | 570 |
| GlaI | GCGC | 2 cut(s) | 501, 503 |
| HapII | CCGG | 2 cut(s) | 163, 340 |
| HgaI | GACGC | 1 cut(s) | 482 |
| HhaI | GCGC | 2 cut(s) | 502, 504 |
| Hin6I | GCGC | 2 cut(s) | 500, 502 |
| HinP1I | GCGC | 2 cut(s) | 500, 502 |
| HindIII | AAGCTT | 1 cut(s) | 230 |
| HinfI | GANTC | 1 cut(s) | 461 |
| HpaII | CCGG | 2 cut(s) | 163, 340 |
| HphI | GGTGA | 1 cut(s) | 64 |
| Hpy166II | GTNNAC | 2 cut(s) | 548, 595 |
| Hpy188I | TCNGA | 1 cut(s) | 18 |
| Hpy188III | TCNNGA | 2 cut(s) | 253, 275 |
| Hpy8I | GTNNAC | 2 cut(s) | 548, 595 |
| HpyAV | CCTTC | 1 cut(s) | 238 |
| HpyCH4III | ACNGT | 1 cut(s) | 69 |
| HpyCH4V | TGCA | 3 cut(s) | 65, 116, 381 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 229, 362 |
| HspAI | GCGC | 2 cut(s) | 500, 502 |
| Ksp22I | TGATCA | 1 cut(s) | 540 |
| Kzo9I | GATC | 4 cut(s) | 54, 385, 540, 565 |
| LpnPI | CCDG | 6 cut(s) | 39, 176, 183, 332, 353, 494 |
| LweI | GCATC | 2 cut(s) | 163, 352 |
| MaeI | CTAG | 1 cut(s) | 570 |
| MaeIII | GTNAC | 1 cut(s) | 304 |
| MalI | GATC | 4 cut(s) | 56, 387, 542, 567 |
| MboI | GATC | 4 cut(s) | 54, 385, 540, 565 |
| MboII | GAAGA | 1 cut(s) | 328 |
| MluCI | AATT | 6 cut(s) | 128, 141, 183, 283, 536, 619 |
| MnlI | CCTC | 7 cut(s) | 12, 31, 74, 282, 367, 531, 566 |
| MseI | TTAA | 4 cut(s) | 140, 219, 258, 534 |
| MslI | CAYNNNNRTG | 2 cut(s) | 351, 511 |
| MspI | CCGG | 2 cut(s) | 163, 340 |
| MspR9I | CCNGG | 1 cut(s) | 164 |
| MvnI | CGCG | 1 cut(s) | 502 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 229, 362 |
| NciI | CCSGG | 1 cut(s) | 164 |
| NdeII | GATC | 4 cut(s) | 54, 385, 540, 565 |
| NlaIV | GGNNCC | 2 cut(s) | 24, 168 |
| PauI | GCGCGC | 1 cut(s) | 500 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 295 |
| PfeI | GAWTC | 1 cut(s) | 461 |
| PpuMI | RGGWCCY | 1 cut(s) | 23 |
| PshBI | ATTAAT | 1 cut(s) | 258 |
| Psp5II | RGGWCCY | 1 cut(s) | 23 |
| PspN4I | GGNNCC | 2 cut(s) | 24, 168 |
| PspPI | GGNCC | 3 cut(s) | 23, 203, 518 |
| PspPPI | RGGWCCY | 1 cut(s) | 23 |
| PteI | GCGCGC | 1 cut(s) | 500 |
| RsaI | GTAC | 2 cut(s) | 71, 404 |
| RsaNI | GTAC | 2 cut(s) | 70, 403 |
| RseI | CAYNNNNRTG | 2 cut(s) | 351, 511 |
| SaqAI | TTAA | 4 cut(s) | 140, 219, 258, 534 |
| Sau3AI | GATC | 4 cut(s) | 54, 385, 540, 565 |
| Sau96I | GGNCC | 3 cut(s) | 23, 203, 518 |
| ScaI | AGTACT | 1 cut(s) | 71 |
| ScrFI | CCNGG | 1 cut(s) | 164 |
| SetI | ASST | 7 cut(s) | 199, 208, 225, 234, 436, 472, 603 |
| SfaNI | GCATC | 2 cut(s) | 163, 352 |
| SfcI | CTRYAG | 1 cut(s) | 548 |
| SinI | GGWCC | 3 cut(s) | 23, 203, 518 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 351, 511 |
| SmlI | CTYRAG | 1 cut(s) | 273 |
| SmoI | CTYRAG | 1 cut(s) | 273 |
| Sse9I | AATT | 6 cut(s) | 128, 141, 183, 283, 536, 619 |
| SsiI | CCGC | 1 cut(s) | 576 |
| SspMI | CTAG | 1 cut(s) | 570 |
| StyD4I | CCNGG | 1 cut(s) | 162 |
| StyI | CCWWGG | 1 cut(s) | 456 |
| TaaI | ACNGT | 1 cut(s) | 69 |
| TasI | AATT | 6 cut(s) | 128, 141, 183, 283, 536, 619 |
| TatI | WGTACW | 2 cut(s) | 69, 402 |
| TfiI | GAWTC | 1 cut(s) | 461 |
| Tru1I | TTAA | 4 cut(s) | 140, 219, 258, 534 |
| Tru9I | TTAA | 4 cut(s) | 140, 219, 258, 534 |
| TscAI | CASTG | 1 cut(s) | 388 |
| TspDTI | ATGAA | 3 cut(s) | 140, 612, 631 |
| TspGWI | ACGGA | 1 cut(s) | 256 |
| TspRI | CASTG | 1 cut(s) | 388 |
| VpaK11BI | GGWCC | 3 cut(s) | 23, 203, 518 |
| VspI | ATTAAT | 1 cut(s) | 258 |
| XapI | RAATTY | 2 cut(s) | 128, 283 |
| XmiI | GTMKAC | 1 cut(s) | 547 |
| XspI | CTAG | 1 cut(s) | 570 |
| ZrmI | AGTACT | 1 cut(s) | 71 |