RchiOBHm_Chr1g0346391

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002361
Physical Location & Seq
Forward (+)
38636129 .. 38637870
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57266

Sequence Viewer

Length: 858 bp
ATGTGTGCTAAGGTTTATGCTTTTTGTTGTTTTGGTGGTTTTCAGAGGGGTCCTGCTTTTATAGAGGAACTACTTTTGATGATCCCAAATGCGCAGTACTATAAAAGAGGCACTTATGACTTGAAAAAGATTATAGAGTATGTAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCGTTCACCGGGAACAAGATGCTCTCCTAATTATTAGCTTACCTAATGGACCTACTGCCCATTTTAAGCTCTCAAAGCTTATCAAGGGTGTGTTAACTGTCATTTTCTTTCCTTATTCTTTATTTGGCATGCCTGCAGATCATGGAAATCTAACCAGTCATGAGCCTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCGTATTGGGAGGATGGATTACCTTCAAGCTCCTATTGGTTTTCTTCTTTCACCTGCTTTCTTCAGATTAACACAGTCACTTTTCCCTCAAGAACCAAATTTTCGTGGTCGGCGAGTTGTAACTTTCCACAACCAGCGAGATTTTATATTCTTCCGGCATCGTCGATGTGCCTCCTTTGCTATTTTTAGTTCTTGCAGTGATCCTTTCTTATACTTGTACATTTTTGAAACCAAAGAGACTAAACAGGTTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAGCTGACGCTATTACTGAAGCAAAACCATTTGCGCGCCTACAGGAATGTGGTCCTCGTTTTACCCTTGAATTGATCAGTCTGCAGCACGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGGTAATCCACTTATCAGTCAATTCATTTCAGTATATTGGTTTCATATCTTTATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

285

Amino Acids

32.82

Weight (kDa)

9.33

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 19 - 248 2.5e-19 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 448
Acc16I TGCGCA 1 cut(s) 93
Acc36I ACCTGC 1 cut(s) 448
AccII CGCG 1 cut(s) 703
AciI CCGC 1 cut(s) 777
AclWI GGATC 3 cut(s) 76, 581, 761
AcsI RAATTY 2 cut(s) 155, 484
AcuI CTGAAG 2 cut(s) 433, 705
AfaI GTAC 2 cut(s) 98, 605
AfiI CCNNNNNNNGG 2 cut(s) 189, 776
AgsI TTSAA 5 cut(s) 124, 413, 614, 638, 737
AluBI AGCT 6 cut(s) 219, 250, 259, 352, 416, 671
AluI AGCT 6 cut(s) 219, 250, 259, 352, 416, 671
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 3 cut(s) 76, 581, 761
ApeKI GCWGC 1 cut(s) 751
ApoI RAATTY 2 cut(s) 155, 484
AspLEI GCGC 3 cut(s) 94, 703, 705
AspS9I GGNCC 3 cut(s) 50, 230, 719
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 179, 429
AvaII GGWCC 3 cut(s) 50, 230, 719
BbvI GCAGC 1 cut(s) 763
BccI CCATC 1 cut(s) 394
BclI TGATCA 1 cut(s) 741
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 1 cut(s) 771
BfmI CTRYAG 3 cut(s) 315, 707, 749
BfuAI ACCTGC 1 cut(s) 448
BisI GCNGC 1 cut(s) 752
BlsI GCNGC 1 cut(s) 753
BmcAI AGTACT 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 3 cut(s) 50, 230, 719
BmgT120I GGNCC 3 cut(s) 50, 230, 719
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 2 cut(s) 190, 553
Bpu10I CCTNAGC 2 cut(s) 9, 348
BpuEI CTTGAG 1 cut(s) 459
BpuMI CCSGG 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 379, 657
BsaXI ACNNNNNCTCC 2 cut(s) 773, 803
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 776
Bse1I ACTGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 379, 657
BseGI GGATG 1 cut(s) 405
BseLI CCNNNNNNNGG 2 cut(s) 189, 776
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 336
BsePI GCGCGC 1 cut(s) 701
BseXI GCAGC 1 cut(s) 763
Bsh1236I CGCG 1 cut(s) 703
BsiSI CCGG 2 cut(s) 190, 541
BslFI GGGAC 1 cut(s) 772
BslI CCNNNNNNNGG 2 cut(s) 189, 776
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 1 cut(s) 772
Bsp1407I TGTACA 1 cut(s) 603
Bsp143I GATC 5 cut(s) 81, 319, 586, 741, 766
BspACI CCGC 1 cut(s) 777
BspCNI CTCAG 1 cut(s) 340
BspFNI CGCG 1 cut(s) 703
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 51
BspMAI CTGCAG 2 cut(s) 319, 753
BspMI ACCTGC 1 cut(s) 448
BspPI GGATC 3 cut(s) 76, 581, 761
BsrGI TGTACA 1 cut(s) 603
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 379, 657
BssHII GCGCGC 1 cut(s) 701
BssMI GATC 5 cut(s) 81, 319, 586, 741, 766
BssT1I CCWWGG 2 cut(s) 379, 657
Bst4CI ACNGT 3 cut(s) 184, 280, 462
BstAUI TGTACA 1 cut(s) 603
BstC8I GCNNGC 3 cut(s) 311, 315, 703
BstDEI CTNAG 2 cut(s) 9, 348
BstF5I GGATG 1 cut(s) 405
BstFNI CGCG 1 cut(s) 703
BstHHI GCGC 3 cut(s) 94, 703, 705
BstKTI GATC 5 cut(s) 84, 322, 589, 744, 769
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 5 cut(s) 81, 319, 586, 741, 766
BstMWI GCNNNNNNNGC 2 cut(s) 256, 563
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 3 cut(s) 315, 707, 749
BstUI CGCG 1 cut(s) 703
BstV1I GCAGC 1 cut(s) 763
BtsCI GGATG 1 cut(s) 405
BtsI GCAGTG 1 cut(s) 589
BtsIMutI CAGTG 1 cut(s) 589
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 3 cut(s) 311, 315, 703
CciI TCATGA 1 cut(s) 340
CfoI GCGC 3 cut(s) 94, 703, 705
Cfr13I GGNCC 3 cut(s) 50, 230, 719
CseI GACGC 1 cut(s) 683
Csp6I GTAC 2 cut(s) 97, 604
CviAII CATG 3 cut(s) 310, 323, 341
CviJI RGCY 7 cut(s) 219, 250, 259, 346, 352, 416, 671
CviKI_1 RGCY 7 cut(s) 219, 250, 259, 346, 352, 416, 671
CviQI GTAC 2 cut(s) 97, 604
DdeI CTNAG 2 cut(s) 9, 348
DpnI GATC 5 cut(s) 83, 321, 588, 743, 768
DpnII GATC 5 cut(s) 81, 319, 586, 741, 766
Eco130I CCWWGG 2 cut(s) 379, 657
Eco47I GGWCC 3 cut(s) 50, 230, 719
Eco57I CTGAAG 2 cut(s) 433, 705
EcoO109I RGGNCCY 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 155
EcoT14I CCWWGG 2 cut(s) 379, 657
ErhI CCWWGG 2 cut(s) 379, 657
FaeI CATG 3 cut(s) 313, 326, 344
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FaqI GGGAC 1 cut(s) 772
FatI CATG 3 cut(s) 309, 322, 340
FauI CCCGC 1 cut(s) 770
FbaI TGATCA 1 cut(s) 741
Fnu4HI GCNGC 1 cut(s) 752
FokI GGATG 1 cut(s) 412
Fsp4HI GCNGC 1 cut(s) 752
FspBI CTAG 1 cut(s) 771
FspI TGCGCA 1 cut(s) 93
GlaI GCGC 3 cut(s) 93, 702, 704
GluI GCNGC 1 cut(s) 752
HapII CCGG 2 cut(s) 190, 541
HgaI GACGC 1 cut(s) 683
HhaI GCGC 3 cut(s) 94, 703, 705
Hin1II CATG 3 cut(s) 313, 326, 344
Hin6I GCGC 3 cut(s) 92, 701, 703
HinP1I GCGC 3 cut(s) 92, 701, 703
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 1 cut(s) 662
HpaI GTTAAC 1 cut(s) 276
HpaII CCGG 2 cut(s) 190, 541
HphI GGTGA 2 cut(s) 179, 429
Hpy166II GTNNAC 3 cut(s) 187, 276, 796
Hpy188I TCNGA 2 cut(s) 45, 452
Hpy188III TCNNGA 2 cut(s) 341, 476
Hpy8I GTNNAC 3 cut(s) 187, 276, 796
Hpy99I CGWCG 1 cut(s) 552
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 3 cut(s) 184, 280, 462
HpyCH4V TGCA 3 cut(s) 317, 582, 751
HpyF10VI GCNNNNNNNGC 2 cut(s) 256, 563
HpyF3I CTNAG 2 cut(s) 9, 348
Hsp92II CATG 3 cut(s) 313, 326, 344
HspAI GCGC 3 cut(s) 92, 701, 703
Ksp22I TGATCA 1 cut(s) 741
KspAI GTTAAC 1 cut(s) 276
Kzo9I GATC 5 cut(s) 81, 319, 586, 741, 766
LmnI GCTCC 1 cut(s) 421
Lsp1109I GCAGC 1 cut(s) 763
LweI GCATC 2 cut(s) 190, 553
MaeI CTAG 1 cut(s) 771
MaeIII GTNAC 2 cut(s) 462, 505
MalI GATC 5 cut(s) 83, 321, 588, 743, 768
MboI GATC 5 cut(s) 81, 319, 586, 741, 766
MboII GAAGA 3 cut(s) 422, 439, 529
MluCI AATT 6 cut(s) 155, 168, 210, 484, 737, 820
MnlI CCTC 8 cut(s) 39, 58, 101, 390, 483, 568, 732, 767
MseI TTAA 5 cut(s) 167, 246, 275, 359, 455
MspI CCGG 2 cut(s) 190, 541
MspR9I CCNGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 703
MwoI GCNNNNNNNGC 2 cut(s) 256, 563
NciI CCSGG 1 cut(s) 191
NdeII GATC 5 cut(s) 81, 319, 586, 741, 766
NlaIII CATG 3 cut(s) 313, 326, 344
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 462
NsbI TGCGCA 1 cut(s) 93
NspI RCATGY 1 cut(s) 313
PaeI GCATGC 1 cut(s) 313
PagI TCATGA 1 cut(s) 340
PaqCI CACCTGC 1 cut(s) 448
PauI GCGCGC 1 cut(s) 701
PcsI WCGNNNNNNNCGW 1 cut(s) 496
PfeI GAWTC 1 cut(s) 662
PkrI GCNGC 1 cut(s) 753
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 3 cut(s) 50, 230, 719
PspPPI RGGWCCY 1 cut(s) 50
PstI CTGCAG 2 cut(s) 319, 753
PteI GCGCGC 1 cut(s) 701
RsaI GTAC 2 cut(s) 98, 605
RsaNI GTAC 2 cut(s) 97, 604
SaqAI TTAA 5 cut(s) 167, 246, 275, 359, 455
SatI GCNGC 1 cut(s) 752
Sau3AI GATC 5 cut(s) 81, 319, 586, 741, 766
Sau96I GGNCC 3 cut(s) 50, 230, 719
ScaI AGTACT 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 191
SfaNI GCATC 2 cut(s) 190, 553
SfcI CTRYAG 3 cut(s) 315, 707, 749
SinI GGWCC 3 cut(s) 50, 230, 719
SmlI CTYRAG 1 cut(s) 474
SmoI CTYRAG 1 cut(s) 474
SphI GCATGC 1 cut(s) 313
Sse9I AATT 6 cut(s) 155, 168, 210, 484, 737, 820
SsiI CCGC 1 cut(s) 777
SspMI CTAG 1 cut(s) 771
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 2 cut(s) 379, 657
TaaI ACNGT 3 cut(s) 184, 280, 462
TaqI TCGA 1 cut(s) 550
TasI AATT 6 cut(s) 155, 168, 210, 484, 737, 820
TatI WGTACW 2 cut(s) 96, 603
TfiI GAWTC 1 cut(s) 662
Tru1I TTAA 5 cut(s) 167, 246, 275, 359, 455
Tru9I TTAA 5 cut(s) 167, 246, 275, 359, 455
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 1 cut(s) 462
TseI GCWGC 1 cut(s) 751
Tsp45I GTSAC 1 cut(s) 462
TspDTI ATGAA 3 cut(s) 167, 813, 832
TspRI CASTG 1 cut(s) 589
VpaK11BI GGWCC 3 cut(s) 50, 230, 719
XapI RAATTY 2 cut(s) 155, 484
XceI RCATGY 1 cut(s) 313
XspI CTAG 1 cut(s) 771
ZrmI AGTACT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.