Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002361

Physical Location & Seq

Genomic Coordinates Forward (+)

40693568 .. 40694610

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0291200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCTTCTTTCAGCTCAGATCATCATGATCATGGGAATCCAGAGATTCTAGTACAAGAAAATAATCCATTCATTAGGACATTGACACTCCACCAGCCTAAAAAATTGAATGTTATCTCCAATCCCATGATCTTCCGATTGTTTGAGCTGTTCCTCAACTACGAGCACGATGCCTTTGTCAAGTTAGTAATTCTCAAAGGTAGCGGAAAAGCTTTTTGTGCTGGTGGTGATGTTGTGTATGTAGCACGTCATCTCTACAATGGCAATTTGAGACCTGCTCTCAATTTTTTCAAAATTGGATACACTCTAATGTATTTCCTAGCAACAAAAACTACACTACAAGTTTCATTTCTTAATGGAATCACTATGGGGAGTGGGGCAGGTATTTCTATACACGGTAGCTTTCGTGTAGCAACGGAGAAGACAGTGTTTGCTATGCCAGAAACGGCTATTGGAGGGTTTCCTGATGTTGGTTCCTTTTACTACCTTTCAAGACTTCCTGGATTCTTTGGAGAGTATCTTGGTCTTACAGGTGCTAGATTGGACGGTCCTGAAATGCTTGCTTTGGGTCTAGCAACTCACTATGTTCCCTCATCTAACTTGGGTTTGCTAGAAGAAGCCTTAATAAGAAAACTAGGCGCCTCTTCAACTAATACAAGCTCAACTGATGACTATGCTATTATTTCAGCTATTCTAGATGAATACTCTGAGCAACCAGCTCCAAAAACCAAGAGTGCTTACCACTATATGGATGTTATTGACAAGTGTTTTTCTCAATCAACAATGGAAGACATATTAAGTAGCCTAGAGAATGAGCTTGCTACCATAATCAACATAACTGATCACCATGAATGGTTATCGTCAGCAATTCAATCACTAAGACAGGCATCACCAACAAGTTTGAAGATTACTTTAAGATCGATTCAAGGAGGAAGGCGGCTTCAAGGAGTTGGTGAGTGCATTGTTCGCGAATATAGAATTATTTCTCATGTTTTGCATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

334

Amino Acids

36.85

Weight (kDa)

6.35

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	25 - 332	2.9e-93	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	25 - 217	1.9e-21	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01560
fragaria_vesca	FvH4_7g18100 FvH4_7g18130
malus_domestica	MD01G1095300.v1.1 MD07G1164400.v1.1
prunus_persica	Prupe.2G203400_v2.0.a1
pyrus_communis	pycom01g11760 pycom07g15940
rosa_chinensis	RchiOBHm_Chr1g0321231 RchiOBHm_Chr1g0346391 RchiOBHm_Chr1g0361751 RchiOBHm_Chr2g0110161 RchiOBHm_Chr3g0479951 RchiOBHm_Chr3g0493911 RchiOBHm_Chr4g0406331 RchiOBHm_Chr5g0043791 RchiOBHm_Chr5g0052991 RchiOBHm_Chr5g0055421 RchiOBHm_Chr6g0259761 RchiOBHm_Chr7g0204491 RchiOBHm_Chr7g0219071 RchiOBHm_Chr7g0228521
rosa_laevigata	RLG00000027705
rosa_multiflora	Rmu_sc0005733.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294720
rosa_rugosa	Rorug01G0291200
rosa_samantha	Rh1AG105100 Rh1AG301600 Rh1BG264500 Rh1CG282900 Rh1DG144800 Rh1DG294500 Rh5BG300200 Rh5BG351900 Rh5DG309100 Rh5DG368200 Rh6AG038900 Rh6AG080500 Rh6CG040900
rosa_wichuraiana	Rw1G026720 Rw5G034050 Rw6G003520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	283, 371
AccB1I	GGYRCC	1 cut(s)	638
AccB7I	CCANNNNNTGG	1 cut(s)	748
AccII	CGCG	1 cut(s)	969
AciI	CCGC	2 cut(s)	204, 937
AcyI	GRCGYC	1 cut(s)	639
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	470, 748
AgsI	TTSAA	8 cut(s)	109, 292, 492, 648, 872, 904, 926, 944
AjiI	CACGTC	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	499
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	8 cut(s)	15, 148, 212, 402, 660, 689, 719, 817
AluI	AGCT	8 cut(s)	15, 148, 212, 402, 660, 689, 719, 817
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	982
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	4 cut(s)	239, 836, 882, 965
AvaII	GGWCC	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	638
BbsI	GAAGAC	2 cut(s)	428, 795
Bbv12I	GWGCWC	1 cut(s)	168
BceAI	ACGGC	1 cut(s)	462
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	1 cut(s)	501
BciVI	GTATCC	1 cut(s)	293
BclI	TGATCA	2 cut(s)	28, 841
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	8 cut(s)	50, 320, 537, 572, 611, 635, 695, 806
BfoI	RGCGCY	1 cut(s)	642
BfuAI	ACCTGC	2 cut(s)	283, 371
BfuI	GTATCC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	938
BlsI	GCNGC	1 cut(s)	939
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	1 cut(s)	548
BmgBI	CACGTC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	2 cut(s)	475, 640
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	2 cut(s)	160, 896
BpiI	GAAGAC	2 cut(s)	428, 795
BplI	GAGNNNNNCTC	2 cut(s)	262, 294
Bsa29I	ATCGAT	1 cut(s)	920
BsaHI	GRCGYC	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 748
BseBI	CCWGG	1 cut(s)	501
BseCI	ATCGAT	1 cut(s)	920
BseGI	GGATG	1 cut(s)	757
BseLI	CCNNNNNNNGG	2 cut(s)	470, 748
BseMII	CTCAG	2 cut(s)	30, 699
Bsh1236I	CGCG	1 cut(s)	969
BshNI	GGYRCC	1 cut(s)	638
BshVI	ATCGAT	1 cut(s)	920
BsiHKAI	GWGCWC	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	470, 748
BsmAI	GTCTC	1 cut(s)	265
Bso31I	GGTCTC	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	5 cut(s)	19, 28, 129, 841, 917
Bsp68I	TCGCGA	1 cut(s)	969
BspACI	CCGC	2 cut(s)	204, 937
BspCNI	CTCAG	2 cut(s)	29, 700
BspDI	ATCGAT	1 cut(s)	920
BspFNI	CGCG	1 cut(s)	969
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	475, 640
BspMI	ACCTGC	2 cut(s)	283, 371
BspT107I	GGYRCC	1 cut(s)	638
BspTNI	GGTCTC	1 cut(s)	265
BssMI	GATC	5 cut(s)	19, 28, 129, 841, 917
BssNI	GRCGYC	1 cut(s)	639
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	3 cut(s)	398, 427, 548
Bst6I	CTCTTC	1 cut(s)	649
BstACI	GRCGYC	1 cut(s)	639
BstC8I	GCNNGC	2 cut(s)	561, 819
BstDEI	CTNAG	3 cut(s)	16, 708, 878
BstF5I	GGATG	1 cut(s)	757
BstFNI	CGCG	1 cut(s)	969
BstH2I	RGCGCY	1 cut(s)	642
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	5 cut(s)	22, 31, 132, 844, 920
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	5 cut(s)	19, 28, 129, 841, 917
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 966
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	499
BstUI	CGCG	1 cut(s)	969
BstV2I	GAAGAC	2 cut(s)	428, 795
Bsu15I	ATCGAT	1 cut(s)	920
BsuI	GTATCC	1 cut(s)	293
BsuTUI	ATCGAT	1 cut(s)	920
BtrI	CACGTC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	757
BtsIMutI	CAGTG	1 cut(s)	432
BtuMI	TCGCGA	1 cut(s)	969
BveI	ACCTGC	2 cut(s)	283, 371
Cac8I	GCNNGC	2 cut(s)	561, 819
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	1 cut(s)	641
Cfr13I	GGNCC	1 cut(s)	548
ClaI	ATCGAT	1 cut(s)	920
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	6 cut(s)	26, 32, 127, 848, 989, 998
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	3 cut(s)	16, 708, 878
DinI	GGCGCC	1 cut(s)	640
DpnI	GATC	5 cut(s)	21, 30, 131, 843, 919
DpnII	GATC	5 cut(s)	19, 28, 129, 841, 917
Eam1104I	CTCTTC	1 cut(s)	649
EarI	CTCTTC	1 cut(s)	649
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	499
EgeI	GGCGCC	1 cut(s)	640
EheI	GGCGCC	1 cut(s)	640
FaeI	CATG	6 cut(s)	29, 35, 130, 851, 992, 1001
FatI	CATG	6 cut(s)	25, 31, 126, 847, 988, 997
FbaI	TGATCA	2 cut(s)	28, 841
Fnu4HI	GCNGC	1 cut(s)	938
FokI	GGATG	1 cut(s)	764
Fsp4HI	GCNGC	1 cut(s)	938
FspBI	CTAG	8 cut(s)	50, 320, 537, 572, 611, 635, 695, 806
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	1 cut(s)	938
HaeII	RGCGCY	1 cut(s)	642
HhaI	GCGC	1 cut(s)	641
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	6 cut(s)	29, 35, 130, 851, 992, 1001
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	5 cut(s)	37, 46, 360, 504, 922
HphI	GGTGA	4 cut(s)	239, 836, 882, 965
Hpy188I	TCNGA	3 cut(s)	19, 137, 709
Hpy188III	TCNNGA	7 cut(s)	26, 41, 464, 492, 551, 695, 968
HpyAV	CCTTC	1 cut(s)	927
HpyCH4III	ACNGT	3 cut(s)	398, 427, 548
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	2 cut(s)	960, 997
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 966
HpyF3I	CTNAG	3 cut(s)	16, 708, 878
HpySE526I	ACGT	1 cut(s)	247
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	6 cut(s)	29, 35, 130, 851, 992, 1001
HspAI	GCGC	1 cut(s)	639
KasI	GGCGCC	1 cut(s)	638
Ksp22I	TGATCA	2 cut(s)	28, 841
Kzo9I	GATC	5 cut(s)	19, 28, 129, 841, 917
LmnI	GCTCC	1 cut(s)	724
LweI	GCATC	2 cut(s)	160, 896
MaeI	CTAG	8 cut(s)	50, 320, 537, 572, 611, 635, 695, 806
MaeII	ACGT	1 cut(s)	247
MalI	GATC	5 cut(s)	21, 30, 131, 843, 919
MboI	GATC	5 cut(s)	19, 28, 129, 841, 917
MboII	GAAGA	6 cut(s)	124, 433, 626, 636, 800, 916
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	7 cut(s)	104, 189, 265, 283, 294, 867, 978
Mly113I	GGCGCC	1 cut(s)	639
MnlI	CCTC	5 cut(s)	164, 449, 601, 652, 923
MroXI	GAANNNNTTC	1 cut(s)	982
MseI	TTAA	4 cut(s)	354, 623, 797, 914
MslI	CAYNNNNRTG	2 cut(s)	30, 308
MspR9I	CCNGG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	969
MwoI	GCNNNNNNNGC	2 cut(s)	218, 966
NarI	GGCGCC	1 cut(s)	639
NdeII	GATC	5 cut(s)	19, 28, 129, 841, 917
NlaIII	CATG	6 cut(s)	29, 35, 130, 851, 992, 1001
NlaIV	GGNNCC	2 cut(s)	475, 640
NruI	TCGCGA	1 cut(s)	969
PagI	TCATGA	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	982
PfeI	GAWTC	5 cut(s)	37, 46, 360, 504, 922
PflMI	CCANNNNNTGG	1 cut(s)	748
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	1 cut(s)	939
PluTI	GGCGCC	1 cut(s)	642
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	475, 640
PspPI	GGNCC	1 cut(s)	548
RruI	TCGCGA	1 cut(s)	969
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	2 cut(s)	30, 308
SaqAI	TTAA	4 cut(s)	354, 623, 797, 914
SatI	GCNGC	1 cut(s)	938
Sau3AI	GATC	5 cut(s)	19, 28, 129, 841, 917
Sau96I	GGNCC	1 cut(s)	548
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	1 cut(s)	168
SfaNI	GCATC	2 cut(s)	160, 896
SfoI	GGCGCC	1 cut(s)	640
SinI	GGWCC	1 cut(s)	548
SmiMI	CAYNNNNRTG	2 cut(s)	30, 308
Sse9I	AATT	7 cut(s)	104, 189, 265, 283, 294, 867, 978
SsiI	CCGC	2 cut(s)	204, 937
SspDI	GGCGCC	1 cut(s)	638
SspMI	CTAG	8 cut(s)	50, 320, 537, 572, 611, 635, 695, 806
StyD4I	CCNGG	1 cut(s)	499
TaaI	ACNGT	3 cut(s)	398, 427, 548
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	920
TasI	AATT	7 cut(s)	104, 189, 265, 283, 294, 867, 978
TatI	WGTACW	1 cut(s)	52
TauI	GCSGC	1 cut(s)	940
TfiI	GAWTC	5 cut(s)	37, 46, 360, 504, 922
Tru1I	TTAA	4 cut(s)	354, 623, 797, 914
Tru9I	TTAA	4 cut(s)	354, 623, 797, 914
TscAI	CASTG	1 cut(s)	432
TspDTI	ATGAA	4 cut(s)	61, 336, 714, 864
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	1 cut(s)	432
Van91I	CCANNNNNTGG	1 cut(s)	748
VpaK11BI	GGWCC	1 cut(s)	548
XbaI	TCTAGA	1 cut(s)	694
XmnI	GAANNNNTTC	1 cut(s)	982
XspI	CTAG	8 cut(s)	50, 320, 537, 572, 611, 635, 695, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.