Rh6AG080500

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002361
Physical Location & Seq
Reverse (-)
11722781 .. 11732626
9846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG080500.1

Sequence Viewer

Length: 801 bp
ATGACGATGAAGCTGCAGATGATCAGAGCCAATTCGAAGTTCAGGGAGAGACTGCAGGAAGTACTGAAATGGTGCTCAATGAAGATGATTTTGAAGAGGGAAGTACTAATTGGGAAGAAGGATGAGATATATGGTGGCAGGTTATTAGCGAGTTTGCAGTTGTTTGTTAGAAATGATGCGGATGAGTTTAGTGCGGTTTTGAAGCGTGAATCGAATCCAAAGATAGTGATCACCACTTGCCGATTTAACTCTTCTAGGGGTCCTACTTTTATAGAGGAACTACTTTCGGTGATCCCAAATGCGCAGTACTATAAAAGAGGCACTTATGACTTGAAAAAAATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCAATCGCTGGGAACCAGATGCTCTCCTAATTATTGGCTTACCTAATGGACCTACTACCCATTTTAAGCTCTCAAAGCTTGTTTTATGGAAGGATATCAAGCGAGATTTTATATTCTTCCGGCATCATCGGTACATTTTTGAAACCAAAGAGACTAAACAGGCTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAGCTGACGCTATTACTGAAGCAAAACCATTTTCGCGCCTACAGTATGACAGTTACTTATCCAAGCACGGAGGTTGTTCAATTGCATACACGGAAGTAGAGCATACTTGCAACCATTTTGAAGTGAAACTAGAGTTTCTCAAGGGTGCCTTGACGAGTCGGGTAAGAAGGGATTTGAGGTTTTTACAATCAACTAATGAGAATCGCATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

266

Amino Acids

31.12

Weight (kDa)

9.74

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 83 - 165 9.7e-09 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 303
Acc36I ACCTGC 1 cut(s) 129
AccB1I GGYRCC 1 cut(s) 731
AccB7I CCANNNNNTGG 1 cut(s) 399
AccII CGCG 1 cut(s) 622
AciI CCGC 2 cut(s) 179, 194
AclWI GGATC 1 cut(s) 286
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 2 cut(s) 576, 624
AfaI GTAC 4 cut(s) 63, 105, 308, 524
AfiI CCNNNNNNNGG 1 cut(s) 399
AgsI TTSAA 6 cut(s) 94, 202, 334, 533, 666, 707
AjuI GAANNNNNNNTTGG 4 cut(s) 23, 55, 93, 125
AluBI AGCT 4 cut(s) 13, 460, 469, 590
AluI AGCT 4 cut(s) 13, 460, 469, 590
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 2 cut(s) 43, 536
AlwI GGATC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 365
AspLEI GCGC 2 cut(s) 304, 624
AspS9I GGNCC 2 cut(s) 260, 440
AsuHPI GGTGA 2 cut(s) 223, 301
AsuII TTCGAA 1 cut(s) 35
AvaII GGWCC 2 cut(s) 260, 440
BanI GGYRCC 1 cut(s) 731
Bbv12I GWGCWC 1 cut(s) 77
BcgI CGANNNNNNTGC 1 cut(s) 29
BclI TGATCA 2 cut(s) 21, 228
BcoDI GTCTC 2 cut(s) 43, 536
BfaI CTAG 2 cut(s) 255, 716
BfmI CTRYAG 3 cut(s) 14, 53, 626
BfuAI ACCTGC 1 cut(s) 129
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmcAI AGTACT 3 cut(s) 63, 105, 308
Bme18I GGWCC 2 cut(s) 260, 440
BmgT120I GGNCC 2 cut(s) 260, 440
BmiI GGNNCC 3 cut(s) 261, 405, 733
BmsI GCATC 3 cut(s) 166, 400, 523
Bpu14I TTCGAA 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 710
BsaBI GATNNNNATC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 576
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse3DI GCAATG 1 cut(s) 792
Bse8I GATNNNNATC 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 576
BseGI GGATG 2 cut(s) 127, 187
BseJI GATNNNNATC 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMI GCAATG 1 cut(s) 792
BseYI CCCAGC 1 cut(s) 399
Bsh1236I CGCG 1 cut(s) 622
BshNI GGYRCC 1 cut(s) 731
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 511
BslI CCNNNNNNNGG 1 cut(s) 399
BsmAI GTCTC 2 cut(s) 43, 536
Bsp119I TTCGAA 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 3 cut(s) 21, 228, 291
BspACI CCGC 2 cut(s) 179, 194
BspFNI CGCG 1 cut(s) 622
BspLI GGNNCC 3 cut(s) 261, 405, 733
BspMAI CTGCAG 2 cut(s) 18, 57
BspMI ACCTGC 1 cut(s) 129
BspPI GGATC 1 cut(s) 286
BspT104I TTCGAA 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 731
BsrDI GCAATG 1 cut(s) 792
BssECI CCNNGG 1 cut(s) 576
BssMI GATC 3 cut(s) 21, 228, 291
BssT1I CCWWGG 1 cut(s) 576
Bst4CI ACNGT 2 cut(s) 630, 638
Bst6I CTCTTC 2 cut(s) 89, 256
BstBI TTCGAA 1 cut(s) 35
BstF5I GGATG 2 cut(s) 127, 187
BstFNI CGCG 1 cut(s) 622
BstHHI GCGC 2 cut(s) 304, 624
BstKTI GATC 3 cut(s) 24, 231, 294
BstMAI GTCTC 2 cut(s) 43, 536
BstMBI GATC 3 cut(s) 21, 228, 291
BstMWI GCNNNNNNNGC 1 cut(s) 466
BstSFI CTRYAG 3 cut(s) 14, 53, 626
BstUI CGCG 1 cut(s) 622
BtsCI GGATG 2 cut(s) 127, 187
BveI ACCTGC 1 cut(s) 129
CfoI GCGC 2 cut(s) 304, 624
Cfr13I GGNCC 2 cut(s) 260, 440
CseI GACGC 1 cut(s) 602
Csp6I GTAC 4 cut(s) 62, 104, 307, 523
CviJI RGCY 7 cut(s) 13, 29, 429, 460, 469, 554, 590
CviKI_1 RGCY 7 cut(s) 13, 29, 429, 460, 469, 554, 590
CviQI GTAC 4 cut(s) 62, 104, 307, 523
DpnI GATC 3 cut(s) 23, 230, 293
DpnII GATC 3 cut(s) 21, 228, 291
Eam1104I CTCTTC 2 cut(s) 89, 256
EarI CTCTTC 2 cut(s) 89, 256
Eco130I CCWWGG 1 cut(s) 576
Eco32I GATATC 1 cut(s) 487
Eco47I GGWCC 2 cut(s) 260, 440
Eco57I CTGAAG 2 cut(s) 576, 624
EcoO109I RGGNCCY 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 365
EcoRV GATATC 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 576
FalI AAGNNNNNCTT 4 cut(s) 307, 339, 719, 751
FbaI TGATCA 2 cut(s) 21, 228
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 2 cut(s) 134, 194
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 2 cut(s) 255, 716
FspI TGCGCA 1 cut(s) 303
GlaI GCGC 2 cut(s) 303, 623
GluI GCNGC 1 cut(s) 14
GsaI CCCAGC 1 cut(s) 403
HapII CCGG 1 cut(s) 511
HgaI GACGC 1 cut(s) 602
HhaI GCGC 2 cut(s) 304, 624
Hin6I GCGC 2 cut(s) 302, 622
HinP1I GCGC 2 cut(s) 302, 622
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 5 cut(s) 209, 214, 581, 742, 787
HpaII CCGG 1 cut(s) 511
HphI GGTGA 2 cut(s) 223, 301
Hpy188I TCNGA 1 cut(s) 26
HpyAV CCTTC 3 cut(s) 112, 475, 747
HpyCH4III ACNGT 2 cut(s) 630, 638
HpyCH4V TGCA 6 cut(s) 16, 55, 157, 353, 671, 696
HpyF10VI GCNNNNNNNGC 1 cut(s) 466
HspAI GCGC 2 cut(s) 302, 622
Ksp22I TGATCA 2 cut(s) 21, 228
Kzo9I GATC 3 cut(s) 21, 228, 291
LpnPI CCDG 7 cut(s) 28, 41, 124, 385, 420, 524, 536
LweI GCATC 3 cut(s) 166, 400, 523
MaeI CTAG 2 cut(s) 255, 716
MaeIII GTNAC 1 cut(s) 638
MalI GATC 3 cut(s) 23, 230, 293
MboI GATC 3 cut(s) 21, 228, 291
MboII GAAGA 5 cut(s) 94, 106, 127, 243, 499
MfeI CAATTG 1 cut(s) 666
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 7 cut(s) 31, 108, 339, 365, 378, 420, 666
MlyI GAGTC 1 cut(s) 751
MnlI CCTC 5 cut(s) 90, 268, 311, 650, 756
MseI TTAA 3 cut(s) 246, 377, 456
MspI CCGG 1 cut(s) 511
MunI CAATTG 1 cut(s) 666
MvnI CGCG 1 cut(s) 622
MwoI GCNNNNNNNGC 1 cut(s) 466
NdeII GATC 3 cut(s) 21, 228, 291
NlaIV GGNNCC 3 cut(s) 261, 405, 733
NsbI TGCGCA 1 cut(s) 303
NspV TTCGAA 1 cut(s) 35
PfeI GAWTC 4 cut(s) 209, 214, 581, 787
PflMI CCANNNNNTGG 1 cut(s) 399
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 1 cut(s) 750
PpsI GAGTC 1 cut(s) 750
PpuMI RGGWCCY 1 cut(s) 260
Psp5II RGGWCCY 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 399
PspN4I GGNNCC 3 cut(s) 261, 405, 733
PspPI GGNCC 2 cut(s) 260, 440
PspPPI RGGWCCY 1 cut(s) 260
PstI CTGCAG 2 cut(s) 18, 57
RsaI GTAC 4 cut(s) 63, 105, 308, 524
RsaNI GTAC 4 cut(s) 62, 104, 307, 523
SaqAI TTAA 3 cut(s) 246, 377, 456
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 3 cut(s) 21, 228, 291
Sau96I GGNCC 2 cut(s) 260, 440
ScaI AGTACT 3 cut(s) 63, 105, 308
SchI GAGTC 1 cut(s) 751
SduI GDGCHC 1 cut(s) 77
SetI ASST 9 cut(s) 15, 143, 436, 445, 462, 471, 592, 661, 767
SfaNI GCATC 3 cut(s) 166, 400, 523
SfcI CTRYAG 3 cut(s) 14, 53, 626
SfuI TTCGAA 1 cut(s) 35
SinI GGWCC 2 cut(s) 260, 440
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
Sse9I AATT 7 cut(s) 31, 108, 339, 365, 378, 420, 666
SsiI CCGC 2 cut(s) 179, 194
SspMI CTAG 2 cut(s) 255, 716
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 2 cut(s) 630, 638
TaqI TCGA 2 cut(s) 35, 212
TasI AATT 7 cut(s) 31, 108, 339, 365, 378, 420, 666
TatI WGTACW 3 cut(s) 61, 103, 306
TfiI GAWTC 4 cut(s) 209, 214, 581, 787
Tru1I TTAA 3 cut(s) 246, 377, 456
Tru9I TTAA 3 cut(s) 246, 377, 456
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 3 cut(s) 23, 95, 377
TspGWI ACGGA 2 cut(s) 669, 692
Van91I CCANNNNNTGG 1 cut(s) 399
VpaK11BI GGWCC 2 cut(s) 260, 440
XapI RAATTY 1 cut(s) 365
XspI CTAG 2 cut(s) 255, 716
ZrmI AGTACT 3 cut(s) 63, 105, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.