FvH4_7g18130

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002361
Physical Location & Seq
Reverse (-)
15224324 .. 15226803
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18130.t1

Sequence Viewer

Length: 903 bp
ATGGGTTTCAAGAGGAAGAAGAGCGAGAACGAAGAAGGAGACGAGCCGAAACCAGCGGCGGAGAAGAAGCTCGAGAAGCGCAAGAAGGTCAAGGCCCGCGACGCTTCCCGCGACGCCGCCGAGAAGCGAGCTCTCGAGCTCGGCGAAGAGCCTCCGGCCAGGGGAGTGCCGAAGACGATTGAGAACACCAGGGAAGAGGATGAGACTGTTTGCAGGCCTGACGATGAAGAGTTGTTTGCTGGAAATGATGTGGATGAGTTTAGTGCGGTTTTGAAGCATGGATCTAATCCAAAGATACTGATCACCACTTGCCGATTTAACTCTTCTAGGGGTCCTGCTTTTATAGAGGAACTACTTTCGGTAATCCCAAATTCGACTTACTATAAAAGAGGAACTTATGACTTGAAAAAGATTATAGAATATGCAAATAAAAAGGACTTCACTTCTTTAATTGTTGTTCATACCAATCGCCATGAACCAGATGCTCTCCTAATAATTGGCTTACCTAGCGGACCTACTGCTCATTTCAAGCTCTCAAATATCAAGAACCATGGAAATCCAACCAGTCATAAGCCTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGCCATTGTATTGGAAGGTACATTTTTGAAACCAAAGAGGTTAAACAAGCTGAAGCAAAGGGAAAAAAGACCAAGGATTCCAAGGCTATGACTGTTACTGAAGCAAAACCAATTGCCCGCCTACAGGGTGGTATCTTAACAGTCCTTCCCATCTTAAACACACAGGAATGTGGTCCTCGATTTACTCTCAAATTGATCAGTCTGCAGCATGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGCCGGAGATGGATACTAGCAGGAGGAGGTTTTTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

301

Amino Acids

33.85

Weight (kDa)

9.16

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 107 - 269 2.1e-11 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 99, 111
AciI CCGC 9 cut(s) 56, 59, 97, 109, 117, 266, 510, 727, 840
AclWI GGATC 2 cut(s) 289, 824
AcoI YGGCCR 2 cut(s) 156, 610
AcsI RAATTY 1 cut(s) 370
AcuI CTGAAG 2 cut(s) 681, 729
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 629
AfiI CCNNNNNNNGG 3 cut(s) 161, 733, 839
AgsI TTSAA 5 cut(s) 10, 274, 406, 529, 638
AjnI CCWGG 2 cut(s) 158, 188
AluBI AGCT 6 cut(s) 70, 131, 139, 532, 580, 659
AluI AGCT 6 cut(s) 70, 131, 139, 532, 580, 659
Alw21I GWGCWC 2 cut(s) 133, 141
Alw26I GTCTC 2 cut(s) 33, 197
AlwI GGATC 2 cut(s) 289, 824
Ama87I CYCGRG 2 cut(s) 71, 134
AoxI GGCC 4 cut(s) 93, 156, 215, 610
ApeKI GCWGC 1 cut(s) 814
ApoI RAATTY 1 cut(s) 370
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 4 cut(s) 94, 332, 512, 782
AsuHPI GGTGA 1 cut(s) 295
AvaI CYCGRG 2 cut(s) 71, 134
AvaII GGWCC 3 cut(s) 332, 512, 782
BalI TGGCCA 1 cut(s) 612
BanII GRGCYC 2 cut(s) 133, 141
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 2 cut(s) 133, 141
BbvI GCAGC 1 cut(s) 826
BccI CCATC 2 cut(s) 767, 865
BciT130I CCWGG 2 cut(s) 160, 190
BciVI GTATCC 1 cut(s) 868
BclI TGATCA 2 cut(s) 300, 804
BcoDI GTCTC 2 cut(s) 33, 197
BfaI CTAG 4 cut(s) 327, 507, 834, 879
BfmI CTRYAG 2 cut(s) 731, 812
BfuI GTATCC 1 cut(s) 868
BisI GCNGC 3 cut(s) 57, 117, 815
BlsI GCNGC 3 cut(s) 58, 118, 816
Bme1390I CCNGG 2 cut(s) 160, 190
Bme18I GGWCC 3 cut(s) 332, 512, 782
BmeT110I CYCGRG 2 cut(s) 71, 134
BmgT120I GGNCC 4 cut(s) 94, 332, 512, 782
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 2 cut(s) 160, 190
BmsI GCATC 1 cut(s) 472
BpiI GAAGAC 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 576
BsaBI GATNNNNATC 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 6 cut(s) 159, 189, 550, 607, 681, 690
BsaXI ACNNNNNCTCC 2 cut(s) 836, 866
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 733, 839
Bse1I ACTGG 1 cut(s) 564
Bse8I GATNNNNATC 1 cut(s) 299
BseBI CCWGG 2 cut(s) 160, 190
BseDI CCNNGG 6 cut(s) 159, 189, 550, 607, 681, 690
BseGI GGATG 2 cut(s) 205, 259
BseJI GATNNNNATC 1 cut(s) 299
BseLI CCNNNNNNNGG 3 cut(s) 161, 733, 839
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 1 cut(s) 564
BseRI GAGGAG 1 cut(s) 901
BseXI GCAGC 1 cut(s) 826
Bsh1236I CGCG 2 cut(s) 99, 111
BshFI GGCC 4 cut(s) 95, 158, 217, 612
BsiHKAI GWGCWC 2 cut(s) 133, 141
BsiHKCI CYCGRG 2 cut(s) 71, 134
BsiSI CCGG 2 cut(s) 155, 866
BslFI GGGAC 1 cut(s) 835
BslI CCNNNNNNNGG 3 cut(s) 161, 733, 839
BsmAI GTCTC 2 cut(s) 33, 197
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 835
BsnI GGCC 4 cut(s) 95, 158, 217, 612
BsoBI CYCGRG 2 cut(s) 71, 134
Bsp1286I GDGCHC 2 cut(s) 133, 141
Bsp143I GATC 4 cut(s) 281, 300, 804, 829
Bsp19I CCATGG 1 cut(s) 550
BspACI CCGC 9 cut(s) 56, 59, 97, 109, 117, 266, 510, 727, 840
BspANI GGCC 4 cut(s) 95, 158, 217, 612
BspCNI CTCAG 1 cut(s) 568
BspFNI CGCG 2 cut(s) 99, 111
BspLI GGNNCC 1 cut(s) 333
BspMAI CTGCAG 1 cut(s) 816
BspPI GGATC 2 cut(s) 289, 824
BspQI GCTCTTC 2 cut(s) 14, 141
BsrI ACTGG 1 cut(s) 564
BssECI CCNNGG 6 cut(s) 159, 189, 550, 607, 681, 690
BssMI GATC 4 cut(s) 281, 300, 804, 829
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 4 cut(s) 550, 607, 681, 690
Bst2UI CCWGG 2 cut(s) 160, 190
Bst4CI ACNGT 3 cut(s) 208, 703, 751
Bst6I CTCTTC 5 cut(s) 14, 141, 189, 222, 328
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 4 cut(s) 97, 129, 215, 727
BstDEI CTNAG 1 cut(s) 576
BstDSI CCRYGG 1 cut(s) 550
BstF5I GGATG 2 cut(s) 205, 259
BstFNI CGCG 2 cut(s) 99, 111
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 4 cut(s) 284, 303, 807, 832
BstMAI GTCTC 2 cut(s) 33, 197
BstMBI GATC 4 cut(s) 281, 300, 804, 829
BstMWI GCNNNNNNNGC 3 cut(s) 76, 101, 507
BstNI CCWGG 2 cut(s) 160, 190
BstSCI CCNGG 2 cut(s) 158, 188
BstSFI CTRYAG 2 cut(s) 731, 812
BstUI CGCG 2 cut(s) 99, 111
BstV1I GCAGC 1 cut(s) 826
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 281
BstXI CCANNNNNNTGG 1 cut(s) 620
BstYI RGATCY 1 cut(s) 281
BsuI GTATCC 1 cut(s) 868
BsuRI GGCC 4 cut(s) 95, 158, 217, 612
BtgI CCRYGG 1 cut(s) 550
BtsCI GGATG 2 cut(s) 205, 259
Cac8I GCNNGC 4 cut(s) 97, 129, 215, 727
CfoI GCGC 1 cut(s) 81
Cfr13I GGNCC 4 cut(s) 94, 332, 512, 782
CseI GACGC 2 cut(s) 110, 122
Csp6I GTAC 1 cut(s) 628
CviAII CATG 4 cut(s) 278, 473, 551, 818
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 1 cut(s) 576
DpnI GATC 4 cut(s) 283, 302, 806, 831
DpnII GATC 4 cut(s) 281, 300, 804, 829
EaeI YGGCCR 2 cut(s) 156, 610
Eam1104I CTCTTC 5 cut(s) 14, 141, 189, 222, 328
EarI CTCTTC 5 cut(s) 14, 141, 189, 222, 328
EciI GGCGGA 1 cut(s) 74
Ecl136II GAGCTC 2 cut(s) 131, 139
Eco130I CCWWGG 4 cut(s) 550, 607, 681, 690
Eco147I AGGCCT 1 cut(s) 217
Eco24I GRGCYC 2 cut(s) 133, 141
Eco47I GGWCC 3 cut(s) 332, 512, 782
Eco53kI GAGCTC 2 cut(s) 131, 139
Eco57I CTGAAG 2 cut(s) 681, 729
Eco88I CYCGRG 2 cut(s) 71, 134
EcoICRI GAGCTC 2 cut(s) 131, 139
EcoO109I RGGNCCY 1 cut(s) 332
EcoRII CCWGG 2 cut(s) 158, 188
EcoT14I CCWWGG 4 cut(s) 550, 607, 681, 690
EcoT38I GRGCYC 2 cut(s) 133, 141
ErhI CCWWGG 4 cut(s) 550, 607, 681, 690
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 4 cut(s) 281, 476, 554, 821
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FaqI GGGAC 1 cut(s) 835
FatI CATG 4 cut(s) 277, 472, 550, 817
FauI CCCGC 4 cut(s) 104, 116, 734, 833
FbaI TGATCA 2 cut(s) 300, 804
Fnu4HI GCNGC 3 cut(s) 57, 117, 815
FokI GGATG 2 cut(s) 212, 266
FriOI GRGCYC 2 cut(s) 133, 141
Fsp4HI GCNGC 3 cut(s) 57, 117, 815
FspBI CTAG 4 cut(s) 327, 507, 834, 879
GlaI GCGC 1 cut(s) 80
GluI GCNGC 3 cut(s) 57, 117, 815
HaeIII GGCC 4 cut(s) 95, 158, 217, 612
HapII CCGG 2 cut(s) 155, 866
HgaI GACGC 2 cut(s) 110, 122
HhaI GCGC 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 4 cut(s) 281, 476, 554, 821
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HinfI GANTC 1 cut(s) 686
HpaII CCGG 2 cut(s) 155, 866
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 1 cut(s) 859
Hpy188III TCNNGA 4 cut(s) 10, 73, 134, 544
Hpy8I GTNNAC 1 cut(s) 859
Hpy99I CGWCG 2 cut(s) 104, 116
HpyAV CCTTC 4 cut(s) 29, 79, 618, 764
HpyCH4III ACNGT 3 cut(s) 208, 703, 751
HpyCH4V TGCA 3 cut(s) 213, 425, 814
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 101, 507
HpyF3I CTNAG 1 cut(s) 576
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 4 cut(s) 281, 476, 554, 821
HspAI GCGC 1 cut(s) 79
Ksp22I TGATCA 2 cut(s) 300, 804
Kzo9I GATC 4 cut(s) 281, 300, 804, 829
LguI GCTCTTC 2 cut(s) 14, 141
Lsp1109I GCAGC 1 cut(s) 826
LweI GCATC 1 cut(s) 472
MaeI CTAG 4 cut(s) 327, 507, 834, 879
MaeIII GTNAC 1 cut(s) 703
MalI GATC 4 cut(s) 283, 302, 806, 831
MboI GATC 4 cut(s) 281, 300, 804, 829
MboII GAAGA 9 cut(s) 28, 31, 44, 76, 158, 184, 206, 239, 315
MfeI CAATTG 1 cut(s) 720
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 2 cut(s) 133, 141
MlsI TGGCCA 1 cut(s) 612
MluCI AATT 5 cut(s) 370, 450, 495, 720, 800
MluNI TGGCCA 1 cut(s) 612
MmeI TCCRAC 1 cut(s) 584
Mox20I TGGCCA 1 cut(s) 612
MscI TGGCCA 1 cut(s) 612
MseI TTAA 6 cut(s) 318, 449, 587, 651, 746, 764
MslI CAYNNNNRTG 1 cut(s) 775
Msp20I TGGCCA 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 2 cut(s) 155, 866
MspR9I CCNGG 2 cut(s) 160, 190
MunI CAATTG 1 cut(s) 720
MvaI CCWGG 2 cut(s) 160, 190
MvnI CGCG 2 cut(s) 99, 111
MwoI GCNNNNNNNGC 3 cut(s) 76, 101, 507
NcoI CCATGG 1 cut(s) 550
NdeII GATC 4 cut(s) 281, 300, 804, 829
NlaIII CATG 4 cut(s) 281, 476, 554, 821
NlaIV GGNNCC 1 cut(s) 333
NmeAIII GCCGAG 2 cut(s) 120, 145
PaeR7I CTCGAG 2 cut(s) 71, 134
PceI AGGCCT 1 cut(s) 217
PciSI GCTCTTC 2 cut(s) 14, 141
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 141
PfeI GAWTC 1 cut(s) 686
PkrI GCNGC 3 cut(s) 58, 118, 816
PpuMI RGGWCCY 1 cut(s) 332
Psp124BI GAGCTC 2 cut(s) 133, 141
Psp5II RGGWCCY 1 cut(s) 332
Psp6I CCWGG 2 cut(s) 158, 188
PspGI CCWGG 2 cut(s) 158, 188
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 4 cut(s) 94, 332, 512, 782
PspPPI RGGWCCY 1 cut(s) 332
PstI CTGCAG 1 cut(s) 816
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
RseI CAYNNNNRTG 1 cut(s) 775
SacI GAGCTC 2 cut(s) 133, 141
SapI GCTCTTC 2 cut(s) 14, 141
SaqAI TTAA 6 cut(s) 318, 449, 587, 651, 746, 764
SatI GCNGC 3 cut(s) 57, 117, 815
Sau3AI GATC 4 cut(s) 281, 300, 804, 829
Sau96I GGNCC 4 cut(s) 94, 332, 512, 782
ScrFI CCNGG 2 cut(s) 160, 190
SduI GDGCHC 2 cut(s) 133, 141
SfaNI GCATC 1 cut(s) 472
SfcI CTRYAG 2 cut(s) 731, 812
Sfr274I CTCGAG 2 cut(s) 71, 134
SinI GGWCC 3 cut(s) 332, 512, 782
SlaI CTCGAG 2 cut(s) 71, 134
SmiMI CAYNNNNRTG 1 cut(s) 775
SmlI CTYRAG 2 cut(s) 71, 134
SmoI CTYRAG 2 cut(s) 71, 134
Sse9I AATT 5 cut(s) 370, 450, 495, 720, 800
SseBI AGGCCT 1 cut(s) 217
SsiI CCGC 9 cut(s) 56, 59, 97, 109, 117, 266, 510, 727, 840
SspMI CTAG 4 cut(s) 327, 507, 834, 879
SstI GAGCTC 2 cut(s) 133, 141
StuI AGGCCT 1 cut(s) 217
StyD4I CCNGG 2 cut(s) 158, 188
StyI CCWWGG 4 cut(s) 550, 607, 681, 690
TaaI ACNGT 3 cut(s) 208, 703, 751
TaqI TCGA 4 cut(s) 72, 135, 374, 787
TasI AATT 5 cut(s) 370, 450, 495, 720, 800
TauI GCSGC 2 cut(s) 59, 119
TfiI GAWTC 1 cut(s) 686
Tru1I TTAA 6 cut(s) 318, 449, 587, 651, 746, 764
Tru9I TTAA 6 cut(s) 318, 449, 587, 651, 746, 764
TseI GCWGC 1 cut(s) 814
TspDTI ATGAA 3 cut(s) 240, 449, 489
VpaK11BI GGWCC 3 cut(s) 332, 512, 782
XapI RAATTY 1 cut(s) 370
XhoI CTCGAG 2 cut(s) 71, 134
XspI CTAG 4 cut(s) 327, 507, 834, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.