Rh6AG038900

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002361
Physical Location & Seq
Forward (+)
5384950 .. 5387292
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG038900.1

Sequence Viewer

Length: 516 bp
ATGACGATGAAGCCGCAGATGATCAGAGCCAATTCGAAGTTCAGGGAGAGACTGCAGGAAGTGCTGAAATCGTGCTCAATGAAGATGATTTTGAAGAGGGAAGTATTAATTGGGAAGAAGGATGAGATATATGGTGGCAGGTTATTAGCGAGTTTGCAGTTGTTTGTTAGAAATGATGCGGATGAGTTTAGTGCGGTTTTGAAGCGTGAATCGAATCCGAAGATATTGATCACCACTTGCCGATTTAACTCTTCTAGGGGTCCTGCTTTTATAGAGGAACTACTTTCGGTGATCCCAAATGCGCAGTACTATAAAAGAGGCACTTATGACTTGAAAAAGATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCAATTGCCGAGAACTAGATGCTCTCCTAATTATTGGCTTACTTAATGGACCTACTGCCCATTTTAAGCTCTCAAAGCTTGTTTTACGGAAGGATATCAAGATCTTAACGGTCTTTCCTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

171

Amino Acids

19.65

Weight (kDa)

9.83

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 83 - 164 6.7e-08 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 303
Acc36I ACCTGC 1 cut(s) 129
AciI CCGC 3 cut(s) 14, 179, 194
AclWI GGATC 1 cut(s) 286
AcsI RAATTY 1 cut(s) 365
AfaI GTAC 1 cut(s) 308
AgsI TTSAA 3 cut(s) 94, 202, 334
AjuI GAANNNNNNNTTGG 4 cut(s) 23, 55, 93, 125
AluBI AGCT 2 cut(s) 460, 469
AluI AGCT 2 cut(s) 460, 469
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 1 cut(s) 286
ApoI RAATTY 1 cut(s) 365
AseI ATTAAT 1 cut(s) 107
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 2 cut(s) 260, 440
AsuHPI GGTGA 2 cut(s) 223, 301
AsuII TTCGAA 1 cut(s) 35
AvaII GGWCC 2 cut(s) 260, 440
Bbv12I GWGCWC 1 cut(s) 77
BclI TGATCA 2 cut(s) 21, 228
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 2 cut(s) 255, 407
BfmI CTRYAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 129
BglII AGATCT 1 cut(s) 492
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmcAI AGTACT 1 cut(s) 308
Bme18I GGWCC 2 cut(s) 260, 440
BmgT120I GGNCC 2 cut(s) 260, 440
BmiI GGNNCC 1 cut(s) 261
BmsI GCATC 2 cut(s) 166, 400
Bpu14I TTCGAA 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 227
BseGI GGATG 2 cut(s) 127, 187
BseJI GATNNNNATC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 43
Bsp119I TTCGAA 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 4 cut(s) 21, 228, 291, 492
BspACI CCGC 3 cut(s) 14, 179, 194
BspLI GGNNCC 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 129
BspPI GGATC 1 cut(s) 286
BspT104I TTCGAA 1 cut(s) 35
BssMI GATC 4 cut(s) 21, 228, 291, 492
Bst4CI ACNGT 1 cut(s) 502
Bst6I CTCTTC 2 cut(s) 89, 256
BstAPI GCANNNNNTGC 1 cut(s) 61
BstBI TTCGAA 1 cut(s) 35
BstF5I GGATG 2 cut(s) 127, 187
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 4 cut(s) 24, 231, 294, 495
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 4 cut(s) 21, 228, 291, 492
BstMWI GCNNNNNNNGC 2 cut(s) 61, 466
BstSFI CTRYAG 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BtsCI GGATG 2 cut(s) 127, 187
BveI ACCTGC 1 cut(s) 129
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 2 cut(s) 260, 440
Csp6I GTAC 1 cut(s) 307
CviJI RGCY 5 cut(s) 13, 29, 429, 460, 469
CviKI_1 RGCY 5 cut(s) 13, 29, 429, 460, 469
CviQI GTAC 1 cut(s) 307
DpnI GATC 4 cut(s) 23, 230, 293, 494
DpnII GATC 4 cut(s) 21, 228, 291, 492
Eam1104I CTCTTC 2 cut(s) 89, 256
EarI CTCTTC 2 cut(s) 89, 256
Eco32I GATATC 1 cut(s) 487
Eco47I GGWCC 2 cut(s) 260, 440
EcoO109I RGGNCCY 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 365
EcoRV GATATC 1 cut(s) 487
FaiI YATR 8 cut(s) 130, 132, 272, 312, 327, 344, 351, 390
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FbaI TGATCA 2 cut(s) 21, 228
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 2 cut(s) 134, 194
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 2 cut(s) 255, 407
FspI TGCGCA 1 cut(s) 303
GlaI GCGC 1 cut(s) 303
GluI GCNGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 304
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 2 cut(s) 209, 214
HphI GGTGA 2 cut(s) 223, 301
Hpy188I TCNGA 3 cut(s) 26, 219, 515
Hpy188III TCNNGA 1 cut(s) 490
HpyAV CCTTC 2 cut(s) 112, 475
HpyCH4III ACNGT 1 cut(s) 502
HpyCH4V TGCA 3 cut(s) 55, 157, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 466
HspAI GCGC 1 cut(s) 302
Ksp22I TGATCA 2 cut(s) 21, 228
Kzo9I GATC 4 cut(s) 21, 228, 291, 492
LpnPI CCDG 4 cut(s) 28, 41, 124, 276
LweI GCATC 2 cut(s) 166, 400
MaeI CTAG 2 cut(s) 255, 407
MalI GATC 4 cut(s) 23, 230, 293, 494
MboI GATC 4 cut(s) 21, 228, 291, 492
MboII GAAGA 5 cut(s) 94, 106, 127, 232, 243
MfeI CAATTG 1 cut(s) 394
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 6 cut(s) 31, 108, 365, 378, 394, 420
MnlI CCTC 3 cut(s) 90, 268, 311
MseI TTAA 6 cut(s) 107, 246, 377, 435, 456, 497
MunI CAATTG 1 cut(s) 394
MwoI GCNNNNNNNGC 2 cut(s) 61, 466
NdeII GATC 4 cut(s) 21, 228, 291, 492
NlaIV GGNNCC 1 cut(s) 261
NmeAIII GCCGAG 1 cut(s) 425
NsbI TGCGCA 1 cut(s) 303
NspV TTCGAA 1 cut(s) 35
PfeI GAWTC 2 cut(s) 209, 214
PkrI GCNGC 1 cut(s) 15
PpuMI RGGWCCY 1 cut(s) 260
PshBI ATTAAT 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 2 cut(s) 260, 440
PspPPI RGGWCCY 1 cut(s) 260
PstI CTGCAG 1 cut(s) 57
PsuI RGATCY 1 cut(s) 492
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 6 cut(s) 107, 246, 377, 435, 456, 497
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 4 cut(s) 21, 228, 291, 492
Sau96I GGNCC 2 cut(s) 260, 440
ScaI AGTACT 1 cut(s) 308
SduI GDGCHC 1 cut(s) 77
SetI ASST 4 cut(s) 143, 445, 462, 471
SfaNI GCATC 2 cut(s) 166, 400
SfcI CTRYAG 1 cut(s) 53
SfuI TTCGAA 1 cut(s) 35
SinI GGWCC 2 cut(s) 260, 440
Sse9I AATT 6 cut(s) 31, 108, 365, 378, 394, 420
SsiI CCGC 3 cut(s) 14, 179, 194
SspMI CTAG 2 cut(s) 255, 407
TaaI ACNGT 1 cut(s) 502
TaqI TCGA 2 cut(s) 35, 212
TasI AATT 6 cut(s) 31, 108, 365, 378, 394, 420
TatI WGTACW 1 cut(s) 306
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 2 cut(s) 209, 214
Tru1I TTAA 6 cut(s) 107, 246, 377, 435, 456, 497
Tru9I TTAA 6 cut(s) 107, 246, 377, 435, 456, 497
TspDTI ATGAA 3 cut(s) 23, 95, 377
TspGWI ACGGA 1 cut(s) 493
VpaK11BI GGWCC 2 cut(s) 260, 440
VspI ATTAAT 1 cut(s) 107
XapI RAATTY 1 cut(s) 365
XspI CTAG 2 cut(s) 255, 407
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.