Rh5BG300200

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002361
Physical Location & Seq
Forward (+)
38711861 .. 38730348
18488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG300200.1

Sequence Viewer

Length: 996 bp
ATGAAGAGGGAAGTACTAATTGGGAAGAAGGATGAGATATATGGTGGCAGGTTATTAGCGAGTTTGCAGTTGTTTGTTATAAATGATGCGGATGAGTTTAGTGCGGTTTTGAAGCGTGAATCGAATCCGAAGATATTGATCACCACTTGCCGATTTAACTCTTCTAGGGGTCCTGCTTTTATAGAGGAACTACTTTCGATGATCCCAAATGCGCAGTACTATAAAAGAGACACTTATGACTTGAAAAAGATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCAATCACCGGGAACCAGATGCTCTCCTAATTATTGGCTTACCTAATGGACCTACTGCCCATTTTAAGCTCTCAAAGCTTGTTTTACGGAAGGATATCAAGAATCATGGAAATCCAACCAGTCATGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCATATTGGGAGGATGGATTACCTTCAAGCTTCTAATGGTTTTCTTCTTTCACCTACTTTCTTCAGATTAATACAGTCACTTTTCCCTCAAGAACCAAATTTTAGTGGTCGGCGAGTTGTAACTTTCCACAACCAACGAGATTTTATATTCTTCCGGCATCATCAGTGTGCCTCCTTTGCTATTTTTAGTTCTTGCAGTGATCCTTTCTTATACTTGTACATTTTTGAAACCAAAAAGACTAAACAGGCTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAGCTGACGCTATTACTGAAGCAAAACCATTTGCGCGCCTACAGTTGTGCATAAGTGTGGAGGCTACTACTATGGGAGAAGAGGTAAGGTACTACTATGGGGGAAGAGGCAAGGCAAGCCTTATGAATTGGGAGAAGAGAATGCAGTGGAGGATTTTAATGGAGGAAGCTGAGAATATGCAGAAGGACAGCATGTGGACATCAGTGAACAACCAAAGGAATAAGCTTTTCCAGAGATGGATGTGCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

331

Amino Acids

38.51

Weight (kDa)

9.5

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 53 - 234 1.3e-21 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
Acc16I TGCGCA 1 cut(s) 213
Acc36I ACCTGC 1 cut(s) 39
AccII CGCG 1 cut(s) 781
AciI CCGC 2 cut(s) 89, 104
AclWI GGATC 2 cut(s) 196, 659
AcsI RAATTY 2 cut(s) 275, 562
AcuI CTGAAG 3 cut(s) 511, 735, 783
AfaI GTAC 4 cut(s) 15, 218, 683, 836
AfiI CCNNNNNNNGG 1 cut(s) 309
AgsI TTSAA 4 cut(s) 112, 244, 491, 692
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 7 cut(s) 370, 379, 430, 494, 749, 914, 970
AluI AGCT 7 cut(s) 370, 379, 430, 494, 749, 914, 970
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 2 cut(s) 196, 659
ApoI RAATTY 2 cut(s) 275, 562
AseI ATTAAT 1 cut(s) 533
AspLEI GCGC 3 cut(s) 214, 781, 783
AspS9I GGNCC 2 cut(s) 170, 350
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 3 cut(s) 133, 299, 507
AvaII GGWCC 2 cut(s) 170, 350
BccI CCATC 2 cut(s) 472, 975
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 785
BfuAI ACCTGC 1 cut(s) 39
BmcAI AGTACT 2 cut(s) 15, 218
Bme1390I CCNGG 1 cut(s) 311
Bme18I GGWCC 2 cut(s) 170, 350
BmgT120I GGNCC 2 cut(s) 170, 350
BmiI GGNNCC 2 cut(s) 171, 315
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 3 cut(s) 76, 310, 631
BpuEI CTTGAG 1 cut(s) 537
BpuMI CCSGG 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 457, 735
BsaXI ACNNNNNCTCC 2 cut(s) 813, 843
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 420
Bse8I GATNNNNATC 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 457, 735
BseGI GGATG 4 cut(s) 37, 97, 483, 990
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 906
BseNI ACTGG 1 cut(s) 420
BsePI GCGCGC 1 cut(s) 779
Bsh1236I CGCG 1 cut(s) 781
BsiSI CCGG 2 cut(s) 310, 619
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 222
BsmI GAATGC 1 cut(s) 891
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 3 cut(s) 138, 201, 664
BspACI CCGC 2 cut(s) 89, 104
BspCNI CTCAG 1 cut(s) 907
BspFNI CGCG 1 cut(s) 781
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 171, 315
BspMI ACCTGC 1 cut(s) 39
BspPI GGATC 2 cut(s) 196, 659
BsrGI TGTACA 1 cut(s) 681
BsrI ACTGG 1 cut(s) 420
BssECI CCNNGG 2 cut(s) 457, 735
BssHII GCGCGC 1 cut(s) 779
BssMI GATC 3 cut(s) 138, 201, 664
BssT1I CCWWGG 2 cut(s) 457, 735
Bst4CI ACNGT 2 cut(s) 540, 789
Bst6I CTCTTC 4 cut(s) 166, 819, 844, 875
BstAUI TGTACA 1 cut(s) 681
BstC8I GCNNGC 2 cut(s) 781, 862
BstDEI CTNAG 1 cut(s) 915
BstF5I GGATG 4 cut(s) 37, 97, 483, 990
BstFNI CGCG 1 cut(s) 781
BstHHI GCGC 3 cut(s) 214, 781, 783
BstKTI GATC 3 cut(s) 141, 204, 667
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 3 cut(s) 138, 201, 664
BstMWI GCNNNNNNNGC 3 cut(s) 376, 641, 861
BstNSI RCATGY 1 cut(s) 940
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 1 cut(s) 785
BstUI CGCG 1 cut(s) 781
BtsCI GGATG 4 cut(s) 37, 97, 483, 990
BtsI GCAGTG 2 cut(s) 667, 896
BtsIMutI CAGTG 4 cut(s) 635, 667, 896, 954
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 781, 862
CciI TCATGA 1 cut(s) 424
CfoI GCGC 3 cut(s) 214, 781, 783
Cfr13I GGNCC 2 cut(s) 170, 350
CseI GACGC 1 cut(s) 761
Csp6I GTAC 4 cut(s) 14, 217, 682, 835
CviAII CATG 3 cut(s) 407, 425, 937
CviQI GTAC 4 cut(s) 14, 217, 682, 835
DdeI CTNAG 1 cut(s) 915
DpnI GATC 3 cut(s) 140, 203, 666
DpnII GATC 3 cut(s) 138, 201, 664
Eam1104I CTCTTC 4 cut(s) 166, 819, 844, 875
EarI CTCTTC 4 cut(s) 166, 819, 844, 875
Eco130I CCWWGG 2 cut(s) 457, 735
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 2 cut(s) 170, 350
Eco57I CTGAAG 3 cut(s) 511, 735, 783
EcoO109I RGGNCCY 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 275
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 2 cut(s) 457, 735
ErhI CCWWGG 2 cut(s) 457, 735
FaeI CATG 3 cut(s) 410, 428, 940
FalI AAGNNNNNCTT 2 cut(s) 217, 249
FatI CATG 3 cut(s) 406, 424, 936
FbaI TGATCA 1 cut(s) 138
FokI GGATG 3 cut(s) 44, 104, 490
FspBI CTAG 1 cut(s) 165
FspI TGCGCA 1 cut(s) 213
GlaI GCGC 3 cut(s) 213, 780, 782
HapII CCGG 2 cut(s) 310, 619
HgaI GACGC 1 cut(s) 761
HhaI GCGC 3 cut(s) 214, 781, 783
Hin1II CATG 3 cut(s) 410, 428, 940
Hin6I GCGC 3 cut(s) 212, 779, 781
HinP1I GCGC 3 cut(s) 212, 779, 781
HindIII AAGCTT 3 cut(s) 377, 492, 968
HinfI GANTC 4 cut(s) 119, 124, 403, 740
HpaII CCGG 2 cut(s) 310, 619
HphI GGTGA 3 cut(s) 133, 299, 507
Hpy166II GTNNAC 2 cut(s) 942, 952
Hpy188I TCNGA 2 cut(s) 129, 530
Hpy188III TCNNGA 4 cut(s) 400, 425, 554, 976
Hpy8I GTNNAC 2 cut(s) 942, 952
HpyAV CCTTC 4 cut(s) 22, 385, 497, 922
HpyCH4III ACNGT 2 cut(s) 540, 789
HpyCH4V TGCA 6 cut(s) 67, 263, 660, 795, 889, 925
HpyF10VI GCNNNNNNNGC 3 cut(s) 376, 641, 861
HpyF3I CTNAG 1 cut(s) 915
Hsp92II CATG 3 cut(s) 410, 428, 940
HspAI GCGC 3 cut(s) 212, 779, 781
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 138, 201, 664
LpnPI CCDG 8 cut(s) 34, 186, 323, 330, 433, 632, 695, 989
LweI GCATC 3 cut(s) 76, 310, 631
MaeI CTAG 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 540, 583
MalI GATC 3 cut(s) 140, 203, 666
MboI GATC 3 cut(s) 138, 201, 664
MluCI AATT 6 cut(s) 18, 275, 288, 330, 562, 871
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 9 cut(s) 178, 468, 561, 646, 799, 820, 845, 888, 901
MseI TTAA 6 cut(s) 156, 287, 366, 437, 533, 902
MslI CAYNNNNRTG 2 cut(s) 630, 800
MspI CCGG 2 cut(s) 310, 619
MspR9I CCNGG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 891
MvnI CGCG 1 cut(s) 781
MwoI GCNNNNNNNGC 3 cut(s) 376, 641, 861
NciI CCSGG 1 cut(s) 311
NdeII GATC 3 cut(s) 138, 201, 664
NlaIII CATG 3 cut(s) 410, 428, 940
NlaIV GGNNCC 2 cut(s) 171, 315
NmuCI GTSAC 1 cut(s) 540
NsbI TGCGCA 1 cut(s) 213
NspI RCATGY 1 cut(s) 940
PagI TCATGA 1 cut(s) 424
PauI GCGCGC 1 cut(s) 779
PctI GAATGC 1 cut(s) 891
PfeI GAWTC 4 cut(s) 119, 124, 403, 740
PpuMI RGGWCCY 1 cut(s) 170
PshBI ATTAAT 1 cut(s) 533
PsiI TTATAA 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 171, 315
PspPI GGNCC 2 cut(s) 170, 350
PspPPI RGGWCCY 1 cut(s) 170
PteI GCGCGC 1 cut(s) 779
RsaI GTAC 4 cut(s) 15, 218, 683, 836
RsaNI GTAC 4 cut(s) 14, 217, 682, 835
RseI CAYNNNNRTG 2 cut(s) 630, 800
SaqAI TTAA 6 cut(s) 156, 287, 366, 437, 533, 902
Sau3AI GATC 3 cut(s) 138, 201, 664
Sau96I GGNCC 2 cut(s) 170, 350
ScaI AGTACT 2 cut(s) 15, 218
ScrFI CCNGG 1 cut(s) 311
SfaNI GCATC 3 cut(s) 76, 310, 631
SfcI CTRYAG 1 cut(s) 785
SinI GGWCC 2 cut(s) 170, 350
SmiMI CAYNNNNRTG 2 cut(s) 630, 800
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
Sse9I AATT 6 cut(s) 18, 275, 288, 330, 562, 871
SsiI CCGC 2 cut(s) 89, 104
SspMI CTAG 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 2 cut(s) 457, 735
TaaI ACNGT 2 cut(s) 540, 789
TaqI TCGA 2 cut(s) 122, 197
TasI AATT 6 cut(s) 18, 275, 288, 330, 562, 871
TatI WGTACW 3 cut(s) 13, 216, 681
TfiI GAWTC 4 cut(s) 119, 124, 403, 740
Tru1I TTAA 6 cut(s) 156, 287, 366, 437, 533, 902
Tru9I TTAA 6 cut(s) 156, 287, 366, 437, 533, 902
TscAI CASTG 4 cut(s) 635, 667, 896, 954
TseFI GTSAC 1 cut(s) 540
Tsp45I GTSAC 1 cut(s) 540
TspDTI ATGAA 3 cut(s) 17, 287, 884
TspGWI ACGGA 1 cut(s) 403
TspRI CASTG 4 cut(s) 635, 667, 896, 954
VpaK11BI GGWCC 2 cut(s) 170, 350
VspI ATTAAT 1 cut(s) 533
XapI RAATTY 2 cut(s) 275, 562
XceI RCATGY 1 cut(s) 940
XspI CTAG 1 cut(s) 165
ZrmI AGTACT 2 cut(s) 15, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.