RchiOBHm_Chr5g0052991

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002361
Physical Location & Seq
Forward (+)
55195069 .. 55196827
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33032

Sequence Viewer

Length: 618 bp
ATGTGTGCTAAGGTTTATGTTTTTTGTTGTTTTGGTGGTTTTCAGAGGGGTCCTGCTTTTATAGAGGAACTAGTTTTGGTGATCCCAAATGCGCAGTACTATAAAAGAGGCACTTATGACTTGAAAAAGATTATAGAGTATGCAAATAAAATGGAATTCACTTCTTTAATTGTTGTTCATACCAATCGCTGGGAACCAGATGCTCTCCTAATTATTGGCTTACCTAATGGACCTACTACCCATTTTAAGCTCTCAAAGCTTGTTTTACGGAAGGATATCAAGAATCATGGAAATCCAACCAGTCATGAGCCTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCGTAGTGGGAGGTACATTTTTGAAACCAAAGAGACTAAACAGGCTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAGCTGACGCTATTACTGAAGCAAAACCATTTTCGCGCCTACAGGAATGTGGTCCTCGTTTTACCCTTAAATTGACCAGTCTGCAGCACGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGGTAATCCACTTATCAGTCAATTCATTTCAGTATATTGGTTTCATATCTTTATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

205

Amino Acids

23.41

Weight (kDa)

9.39

Isoelectric Point (pI)

31.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 19 - 111 2.2e-13 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 93
AccB7I CCANNNNNTGG 1 cut(s) 189
AccII CGCG 1 cut(s) 463
AciI CCGC 1 cut(s) 537
AclWI GGATC 2 cut(s) 76, 521
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 2 cut(s) 417, 465
AfaI GTAC 2 cut(s) 98, 365
AfiI CCNNNNNNNGG 2 cut(s) 189, 536
AgsI TTSAA 2 cut(s) 124, 374
AhlI ACTAGT 1 cut(s) 70
AluBI AGCT 4 cut(s) 250, 259, 316, 431
AluI AGCT 4 cut(s) 250, 259, 316, 431
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 2 cut(s) 76, 521
ApeKI GCWGC 1 cut(s) 511
ApoI RAATTY 1 cut(s) 155
AspLEI GCGC 2 cut(s) 94, 465
AspS9I GGNCC 3 cut(s) 50, 230, 479
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 3 cut(s) 50, 230, 479
BbvI GCAGC 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 377
BcuI ACTAGT 1 cut(s) 70
BfaI CTAG 2 cut(s) 71, 531
BfmI CTRYAG 2 cut(s) 467, 509
BisI GCNGC 1 cut(s) 512
BlsI GCNGC 1 cut(s) 513
BmcAI AGTACT 1 cut(s) 98
Bme18I GGWCC 3 cut(s) 50, 230, 479
BmgT120I GGNCC 3 cut(s) 50, 230, 479
BmiI GGNNCC 2 cut(s) 51, 195
BmsI GCATC 1 cut(s) 190
Bpu10I CCTNAGC 2 cut(s) 9, 312
BsaJI CCNNGG 2 cut(s) 343, 417
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 536
Bse1I ACTGG 2 cut(s) 300, 504
BseDI CCNNGG 2 cut(s) 343, 417
BseLI CCNNNNNNNGG 2 cut(s) 189, 536
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 2 cut(s) 300, 504
BseXI GCAGC 1 cut(s) 523
BseYI CCCAGC 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 463
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 2 cut(s) 189, 536
BsmAI GTCTC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 532
Bsp143I GATC 2 cut(s) 81, 526
BspACI CCGC 1 cut(s) 537
BspCNI CTCAG 1 cut(s) 304
BspFNI CGCG 1 cut(s) 463
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 51, 195
BspMAI CTGCAG 1 cut(s) 513
BspPI GGATC 2 cut(s) 76, 521
BsrI ACTGG 2 cut(s) 300, 504
BssECI CCNNGG 2 cut(s) 343, 417
BssMI GATC 2 cut(s) 81, 526
BssT1I CCWWGG 2 cut(s) 343, 417
BstDEI CTNAG 2 cut(s) 9, 312
BstFNI CGCG 1 cut(s) 463
BstHHI GCGC 2 cut(s) 94, 465
BstKTI GATC 2 cut(s) 84, 529
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 2 cut(s) 81, 526
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstSFI CTRYAG 2 cut(s) 467, 509
BstUI CGCG 1 cut(s) 463
BstV1I GCAGC 1 cut(s) 523
CciI TCATGA 1 cut(s) 304
CfoI GCGC 2 cut(s) 94, 465
Cfr13I GGNCC 3 cut(s) 50, 230, 479
CseI GACGC 1 cut(s) 443
Csp6I GTAC 2 cut(s) 97, 364
CviAII CATG 2 cut(s) 287, 305
CviJI RGCY 7 cut(s) 219, 250, 259, 310, 316, 395, 431
CviKI_1 RGCY 7 cut(s) 219, 250, 259, 310, 316, 395, 431
CviQI GTAC 2 cut(s) 97, 364
DdeI CTNAG 2 cut(s) 9, 312
DpnI GATC 2 cut(s) 83, 528
DpnII GATC 2 cut(s) 81, 526
Eco130I CCWWGG 2 cut(s) 343, 417
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 3 cut(s) 50, 230, 479
Eco57I CTGAAG 2 cut(s) 417, 465
EcoO109I RGGNCCY 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 155
EcoRV GATATC 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 343, 417
ErhI CCWWGG 2 cut(s) 343, 417
FaeI CATG 2 cut(s) 290, 308
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FaqI GGGAC 1 cut(s) 532
FatI CATG 2 cut(s) 286, 304
FauI CCCGC 1 cut(s) 530
Fnu4HI GCNGC 1 cut(s) 512
Fsp4HI GCNGC 1 cut(s) 512
FspBI CTAG 2 cut(s) 71, 531
FspI TGCGCA 1 cut(s) 93
GlaI GCGC 2 cut(s) 93, 464
GluI GCNGC 1 cut(s) 512
GsaI CCCAGC 1 cut(s) 193
HgaI GACGC 1 cut(s) 443
HhaI GCGC 2 cut(s) 94, 465
Hin1II CATG 2 cut(s) 290, 308
Hin6I GCGC 2 cut(s) 92, 463
HinP1I GCGC 2 cut(s) 92, 463
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 2 cut(s) 283, 422
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 556
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 2 cut(s) 280, 305
Hpy8I GTNNAC 1 cut(s) 556
HpyAV CCTTC 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 143, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 2 cut(s) 9, 312
Hsp92II CATG 2 cut(s) 290, 308
HspAI GCGC 2 cut(s) 92, 463
Kzo9I GATC 2 cut(s) 81, 526
LpnPI CCDG 8 cut(s) 66, 175, 210, 313, 324, 377, 455, 517
Lsp1109I GCAGC 1 cut(s) 523
LweI GCATC 1 cut(s) 190
MaeI CTAG 2 cut(s) 71, 531
MalI GATC 2 cut(s) 83, 528
MboI GATC 2 cut(s) 81, 526
MluCI AATT 5 cut(s) 155, 168, 210, 497, 580
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 6 cut(s) 39, 58, 101, 354, 492, 527
MseI TTAA 4 cut(s) 167, 246, 323, 495
MslI CAYNNNNRTG 1 cut(s) 354
MvnI CGCG 1 cut(s) 463
MwoI GCNNNNNNNGC 1 cut(s) 256
NdeII GATC 2 cut(s) 81, 526
NlaIII CATG 2 cut(s) 290, 308
NlaIV GGNNCC 2 cut(s) 51, 195
NsbI TGCGCA 1 cut(s) 93
PagI TCATGA 1 cut(s) 304
PfeI GAWTC 2 cut(s) 283, 422
PflMI CCANNNNNTGG 1 cut(s) 189
PkrI GCNGC 1 cut(s) 513
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
PspFI CCCAGC 1 cut(s) 189
PspN4I GGNNCC 2 cut(s) 51, 195
PspPI GGNCC 3 cut(s) 50, 230, 479
PspPPI RGGWCCY 1 cut(s) 50
PstI CTGCAG 1 cut(s) 513
RsaI GTAC 2 cut(s) 98, 365
RsaNI GTAC 2 cut(s) 97, 364
RseI CAYNNNNRTG 1 cut(s) 354
SaqAI TTAA 4 cut(s) 167, 246, 323, 495
SatI GCNGC 1 cut(s) 512
Sau3AI GATC 2 cut(s) 81, 526
Sau96I GGNCC 3 cut(s) 50, 230, 479
ScaI AGTACT 1 cut(s) 98
SetI ASST 9 cut(s) 15, 226, 235, 252, 261, 318, 365, 433, 564
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 2 cut(s) 467, 509
SinI GGWCC 3 cut(s) 50, 230, 479
SmiMI CAYNNNNRTG 1 cut(s) 354
SpeI ACTAGT 1 cut(s) 70
Sse9I AATT 5 cut(s) 155, 168, 210, 497, 580
SsiI CCGC 1 cut(s) 537
SspMI CTAG 2 cut(s) 71, 531
StyI CCWWGG 2 cut(s) 343, 417
TasI AATT 5 cut(s) 155, 168, 210, 497, 580
TatI WGTACW 1 cut(s) 96
TfiI GAWTC 2 cut(s) 283, 422
Tru1I TTAA 4 cut(s) 167, 246, 323, 495
Tru9I TTAA 4 cut(s) 167, 246, 323, 495
TseI GCWGC 1 cut(s) 511
TspDTI ATGAA 3 cut(s) 167, 573, 592
TspGWI ACGGA 1 cut(s) 283
Van91I CCANNNNNTGG 1 cut(s) 189
VpaK11BI GGWCC 3 cut(s) 50, 230, 479
XapI RAATTY 1 cut(s) 155
XspI CTAG 2 cut(s) 71, 531
ZrmI AGTACT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.