Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002361

Physical Location & Seq

Genomic Coordinates Reverse (-)

39884665 .. 39885141

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG264500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGCTTCAAGAGGAAGAAGAGCGAGAACGAAGGAGGAGACGAGCCCAAACCAGTAGCAGTGGAGATCGAGAAGAAGAAGAAGGGGATACTGCCGTCGATGATAAAGAACAAGGACAAGAGAGCCGCCGTCCACGCCAAGCTCAAGCAAGAGAAGAAGCTCGATAAGCGCAAGAAGGTCAAGGCCCGCGACGCCGCCGAAAAGCGAGCTCTCGAGCTCGGCGAAGAGCCTCCGGCGAGGAAGATTCCGAAGACGATTGAGAACACCAGGGAGGAGGATGAGACTGTTTGTAGGCCCGACGACGAAGAGGTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

105

Amino Acids

11.99

Weight (kDa)

9.41

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01560
fragaria_vesca	FvH4_7g18100 FvH4_7g18130
malus_domestica	MD01G1095300.v1.1 MD07G1164400.v1.1
prunus_persica	Prupe.2G203400_v2.0.a1
pyrus_communis	pycom01g11760 pycom07g15940
rosa_chinensis	RchiOBHm_Chr1g0321231 RchiOBHm_Chr1g0346391 RchiOBHm_Chr1g0361751 RchiOBHm_Chr2g0110161 RchiOBHm_Chr3g0479951 RchiOBHm_Chr3g0493911 RchiOBHm_Chr4g0406331 RchiOBHm_Chr5g0043791 RchiOBHm_Chr5g0052991 RchiOBHm_Chr5g0055421 RchiOBHm_Chr6g0259761 RchiOBHm_Chr7g0204491 RchiOBHm_Chr7g0219071 RchiOBHm_Chr7g0228521
rosa_laevigata	RLG00000027705
rosa_multiflora	Rmu_sc0005733.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294720
rosa_rugosa	Rorug01G0291200
rosa_samantha	Rh1AG105100 Rh1AG301600 Rh1BG264500 Rh1CG282900 Rh1DG144800 Rh1DG294500 Rh5BG300200 Rh5BG351900 Rh5DG309100 Rh5DG368200 Rh6AG038900 Rh6AG080500 Rh6CG040900
rosa_wichuraiana	Rw1G026720 Rw5G034050 Rw6G003520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	189
AciI	CCGC	3 cut(s)	126, 187, 195
AcyI	GRCGYC	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	4 cut(s)	142, 160, 209, 217
AluI	AGCT	4 cut(s)	142, 160, 209, 217
Alw21I	GWGCWC	2 cut(s)	211, 219
Alw26I	GTCTC	2 cut(s)	33, 275
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	2 cut(s)	183, 293
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	184, 294
AvaI	CYCGRG	1 cut(s)	212
BaeI	ACNNNNGTAYC	2 cut(s)	80, 113
BanII	GRGCYC	3 cut(s)	48, 211, 219
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	2 cut(s)	211, 219
BceAI	ACGGC	2 cut(s)	79, 113
BciT130I	CCWGG	1 cut(s)	268
BciVI	GTATCC	1 cut(s)	81
BcoDI	GTCTC	2 cut(s)	33, 275
BfuI	GTATCC	1 cut(s)	81
BisI	GCNGC	2 cut(s)	126, 195
BlsI	GCNGC	2 cut(s)	127, 196
Bme1390I	CCNGG	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	184, 294
BmrFI	CCNGG	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	53
BseRI	GAGGAG	2 cut(s)	51, 287
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	185, 295
BsiHKAI	GWGCWC	2 cut(s)	211, 219
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	233
BsmAI	GTCTC	2 cut(s)	33, 275
BsmBI	CGTCTC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	185, 295
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	3 cut(s)	48, 211, 219
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	3 cut(s)	126, 187, 195
BspANI	GGCC	2 cut(s)	185, 295
BspFNI	CGCG	1 cut(s)	189
BspQI	GCTCTTC	2 cut(s)	14, 219
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	66
BssNI	GRCGYC	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	3 cut(s)	14, 219, 300
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	187, 207
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	2 cut(s)	33, 275
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 166, 191
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	266
BstUI	CGCG	1 cut(s)	189
BstV2I	GAAGAC	1 cut(s)	257
BsuI	GTATCC	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	185, 295
BtsCI	GGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	187, 207
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	184, 294
CseI	GACGC	1 cut(s)	200
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eam1104I	CTCTTC	3 cut(s)	14, 219, 300
EarI	CTCTTC	3 cut(s)	14, 219, 300
Ecl136II	GAGCTC	2 cut(s)	209, 217
Eco24I	GRGCYC	3 cut(s)	48, 211, 219
Eco53kI	GAGCTC	2 cut(s)	209, 217
Eco88I	CYCGRG	1 cut(s)	212
EcoICRI	GAGCTC	2 cut(s)	209, 217
EcoRII	CCWGG	1 cut(s)	266
EcoT38I	GRGCYC	3 cut(s)	48, 211, 219
Esp3I	CGTCTC	1 cut(s)	33
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	2 cut(s)	126, 195
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	3 cut(s)	48, 211, 219
Fsp4HI	GCNGC	2 cut(s)	126, 195
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	2 cut(s)	126, 195
HaeIII	GGCC	2 cut(s)	185, 295
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	192
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	3 cut(s)	10, 70, 212
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	4 cut(s)	100, 194, 302, 305
HpyAV	CCTTC	3 cut(s)	26, 76, 169
HpyCH4III	ACNGT	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 166, 191
Hsp92I	GRCGYC	1 cut(s)	192
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	66
LguI	GCTCTTC	2 cut(s)	14, 219
LpnPI	CCDG	4 cut(s)	66, 246, 253, 280
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MhlI	GDGCHC	3 cut(s)	48, 211, 219
MnlI	CCTC	7 cut(s)	6, 29, 231, 240, 265, 268, 301
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	268
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	134, 166, 191
NdeII	GATC	1 cut(s)	66
NmeAIII	GCCGAG	1 cut(s)	198
PaeR7I	CTCGAG	1 cut(s)	212
PciSI	GCTCTTC	2 cut(s)	14, 219
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	127, 196
Psp124BI	GAGCTC	2 cut(s)	211, 219
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspPI	GGNCC	2 cut(s)	184, 294
SacI	GAGCTC	2 cut(s)	211, 219
SapI	GCTCTTC	2 cut(s)	14, 219
SatI	GCNGC	2 cut(s)	126, 195
Sau3AI	GATC	1 cut(s)	66
Sau96I	GGNCC	2 cut(s)	184, 294
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	3 cut(s)	48, 211, 219
SetI	ASST	6 cut(s)	144, 162, 180, 211, 219, 312
Sfr274I	CTCGAG	1 cut(s)	212
SlaI	CTCGAG	1 cut(s)	212
SmlI	CTYRAG	2 cut(s)	143, 212
SmoI	CTYRAG	2 cut(s)	143, 212
SsiI	CCGC	3 cut(s)	126, 187, 195
SstI	GAGCTC	2 cut(s)	211, 219
StyD4I	CCNGG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	4 cut(s)	69, 98, 162, 213
TauI	GCSGC	2 cut(s)	128, 197
TfiI	GAWTC	1 cut(s)	244
TscAI	CASTG	1 cut(s)	66
TspRI	CASTG	1 cut(s)	66
XhoI	CTCGAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.