RchiOBHm_Chr5g0043791

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002361
Physical Location & Seq
Forward (+)
38834552 .. 38836590
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32202

Sequence Viewer

Length: 966 bp
ATGAAGAGGGAAGTACTAATTGGGAAGAAGGATGAGATATATGGTGGCAGGTTATTAGCGAGTTTGCAGTTGTTTGTTATAAATGATGCGGATGAGTTTAGTGCGGTTTTGAAGCGTGAATCGAATCCGAAGATATTGATCACCACTTGCCGATTTAACTCTTCTAGGGGTCCTGCTTTTATAGAGGAACTACTTTCGATGATCCCAAATGCGCAGTACTATAAAAGAGACACTTATGACTTGAAAAAGATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCAATCACCGGGAACCAGATGCTCTCCTAATTATTGGCTTACCTAATGGACCTACTGCCCATTTTAAGCTCTCAAAGCTTGTTTTACGGAAGGATATCAAGAATCATGGAAATCCAACCAGTCATGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCATATTGGGAGGATGGATTACCTTCAAGCTTCTAATGGTTTTCTTCTTTCACCTACTTTCTTCAGATTAATACAGTCACTTTTCCCTCAAGAACCAAATTTTAGTGGTCGGCGAGTTGTAACTTTCCACAACCAACGAGATTTTATATTCTTCCGGCATCATCAGTGTGCCTCCTTTGCTATTTTTAGTTCTTGCAGTGATCCTTTCTTATACTTGTACATTTTTGAAACCAAAAAGACTAAACAGGCTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAGCTGACGCTATTACTGAAGCAAAACCATTTGCGCGCCTACAGGAATGTGGTCCTCGTTTTACCCTTAAATTGATCAGTCTGCAGCACGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGGTAATCCACTTATCAGTCAATTCATTTCAGTATATTGGTTTCATATCTTTATCAGAAGAAAATATTGAAAGATACCTAACTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

321

Amino Acids

36.98

Weight (kDa)

9.36

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 53 - 274 7.5e-28 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
Acc16I TGCGCA 1 cut(s) 213
Acc36I ACCTGC 1 cut(s) 39
AccII CGCG 1 cut(s) 781
AciI CCGC 3 cut(s) 89, 104, 855
AclWI GGATC 3 cut(s) 196, 659, 839
AcsI RAATTY 2 cut(s) 275, 562
AcuI CTGAAG 3 cut(s) 511, 735, 783
AfaI GTAC 3 cut(s) 15, 218, 683
AfiI CCNNNNNNNGG 2 cut(s) 309, 854
AgsI TTSAA 5 cut(s) 112, 244, 491, 692, 947
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 5 cut(s) 370, 379, 430, 494, 749
AluI AGCT 5 cut(s) 370, 379, 430, 494, 749
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 3 cut(s) 196, 659, 839
ApeKI GCWGC 1 cut(s) 829
ApoI RAATTY 2 cut(s) 275, 562
AseI ATTAAT 1 cut(s) 533
AspLEI GCGC 3 cut(s) 214, 781, 783
AspS9I GGNCC 3 cut(s) 170, 350, 797
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 3 cut(s) 133, 299, 507
AvaII GGWCC 3 cut(s) 170, 350, 797
BbvI GCAGC 1 cut(s) 841
BccI CCATC 1 cut(s) 472
BclI TGATCA 2 cut(s) 138, 819
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 2 cut(s) 165, 849
BfmI CTRYAG 2 cut(s) 785, 827
BfuAI ACCTGC 1 cut(s) 39
BisI GCNGC 1 cut(s) 830
BlsI GCNGC 1 cut(s) 831
BmcAI AGTACT 2 cut(s) 15, 218
Bme1390I CCNGG 1 cut(s) 311
Bme18I GGWCC 3 cut(s) 170, 350, 797
BmgT120I GGNCC 3 cut(s) 170, 350, 797
BmiI GGNNCC 2 cut(s) 171, 315
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 3 cut(s) 76, 310, 631
BpuEI CTTGAG 1 cut(s) 537
BpuMI CCSGG 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 457, 735
BsaXI ACNNNNNCTCC 2 cut(s) 851, 881
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 854
Bse1I ACTGG 1 cut(s) 420
Bse8I GATNNNNATC 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 457, 735
BseGI GGATG 3 cut(s) 37, 97, 483
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 2 cut(s) 309, 854
BseNI ACTGG 1 cut(s) 420
BsePI GCGCGC 1 cut(s) 779
BseXI GCAGC 1 cut(s) 841
Bsh1236I CGCG 1 cut(s) 781
BsiSI CCGG 2 cut(s) 310, 619
BslFI GGGAC 1 cut(s) 850
BslI CCNNNNNNNGG 2 cut(s) 309, 854
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 850
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 5 cut(s) 138, 201, 664, 819, 844
BspACI CCGC 3 cut(s) 89, 104, 855
BspFNI CGCG 1 cut(s) 781
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 171, 315
BspMAI CTGCAG 1 cut(s) 831
BspMI ACCTGC 1 cut(s) 39
BspPI GGATC 3 cut(s) 196, 659, 839
BsrGI TGTACA 1 cut(s) 681
BsrI ACTGG 1 cut(s) 420
BssECI CCNNGG 2 cut(s) 457, 735
BssHII GCGCGC 1 cut(s) 779
BssMI GATC 5 cut(s) 138, 201, 664, 819, 844
BssT1I CCWWGG 2 cut(s) 457, 735
Bst4CI ACNGT 1 cut(s) 540
Bst6I CTCTTC 1 cut(s) 166
BstAUI TGTACA 1 cut(s) 681
BstC8I GCNNGC 1 cut(s) 781
BstF5I GGATG 3 cut(s) 37, 97, 483
BstFNI CGCG 1 cut(s) 781
BstHHI GCGC 3 cut(s) 214, 781, 783
BstKTI GATC 5 cut(s) 141, 204, 667, 822, 847
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 5 cut(s) 138, 201, 664, 819, 844
BstMWI GCNNNNNNNGC 2 cut(s) 376, 641
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 2 cut(s) 785, 827
BstUI CGCG 1 cut(s) 781
BstV1I GCAGC 1 cut(s) 841
BtsCI GGATG 3 cut(s) 37, 97, 483
BtsI GCAGTG 1 cut(s) 667
BtsIMutI CAGTG 2 cut(s) 635, 667
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 781
CciI TCATGA 1 cut(s) 424
CfoI GCGC 3 cut(s) 214, 781, 783
Cfr13I GGNCC 3 cut(s) 170, 350, 797
CseI GACGC 1 cut(s) 761
Csp6I GTAC 3 cut(s) 14, 217, 682
CviAII CATG 2 cut(s) 407, 425
CviJI RGCY 7 cut(s) 339, 370, 379, 430, 494, 713, 749
CviKI_1 RGCY 7 cut(s) 339, 370, 379, 430, 494, 713, 749
CviQI GTAC 3 cut(s) 14, 217, 682
DpnI GATC 5 cut(s) 140, 203, 666, 821, 846
DpnII GATC 5 cut(s) 138, 201, 664, 819, 844
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 457, 735
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 3 cut(s) 170, 350, 797
Eco57I CTGAAG 3 cut(s) 511, 735, 783
EcoO109I RGGNCCY 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 275
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 2 cut(s) 457, 735
ErhI CCWWGG 2 cut(s) 457, 735
FaeI CATG 2 cut(s) 410, 428
FalI AAGNNNNNCTT 2 cut(s) 217, 249
FaqI GGGAC 1 cut(s) 850
FatI CATG 2 cut(s) 406, 424
FauI CCCGC 1 cut(s) 848
FbaI TGATCA 2 cut(s) 138, 819
Fnu4HI GCNGC 1 cut(s) 830
FokI GGATG 3 cut(s) 44, 104, 490
Fsp4HI GCNGC 1 cut(s) 830
FspBI CTAG 2 cut(s) 165, 849
FspI TGCGCA 1 cut(s) 213
GlaI GCGC 3 cut(s) 213, 780, 782
GluI GCNGC 1 cut(s) 830
HapII CCGG 2 cut(s) 310, 619
HgaI GACGC 1 cut(s) 761
HhaI GCGC 3 cut(s) 214, 781, 783
Hin1II CATG 2 cut(s) 410, 428
Hin6I GCGC 3 cut(s) 212, 779, 781
HinP1I GCGC 3 cut(s) 212, 779, 781
HindIII AAGCTT 2 cut(s) 377, 492
HinfI GANTC 4 cut(s) 119, 124, 403, 740
HpaII CCGG 2 cut(s) 310, 619
HphI GGTGA 3 cut(s) 133, 299, 507
Hpy166II GTNNAC 1 cut(s) 874
Hpy188I TCNGA 3 cut(s) 129, 530, 934
Hpy188III TCNNGA 3 cut(s) 400, 425, 554
Hpy8I GTNNAC 1 cut(s) 874
HpyAV CCTTC 3 cut(s) 22, 385, 497
HpyCH4III ACNGT 1 cut(s) 540
HpyCH4V TGCA 4 cut(s) 67, 263, 660, 829
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 641
Hsp92II CATG 2 cut(s) 410, 428
HspAI GCGC 3 cut(s) 212, 779, 781
Ksp22I TGATCA 2 cut(s) 138, 819
Kzo9I GATC 5 cut(s) 138, 201, 664, 819, 844
LpnPI CCDG 8 cut(s) 34, 186, 323, 330, 433, 632, 695, 773
Lsp1109I GCAGC 1 cut(s) 841
LweI GCATC 3 cut(s) 76, 310, 631
MaeI CTAG 2 cut(s) 165, 849
MaeIII GTNAC 2 cut(s) 540, 583
MalI GATC 5 cut(s) 140, 203, 666, 821, 846
MboI GATC 5 cut(s) 138, 201, 664, 819, 844
MboII GAAGA 8 cut(s) 16, 37, 142, 153, 500, 517, 607, 947
MluCI AATT 7 cut(s) 18, 275, 288, 330, 562, 815, 898
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 6 cut(s) 178, 468, 561, 646, 810, 845
MseI TTAA 6 cut(s) 156, 287, 366, 437, 533, 813
MslI CAYNNNNRTG 1 cut(s) 630
MspI CCGG 2 cut(s) 310, 619
MspR9I CCNGG 1 cut(s) 311
MvnI CGCG 1 cut(s) 781
MwoI GCNNNNNNNGC 2 cut(s) 376, 641
NciI CCSGG 1 cut(s) 311
NdeII GATC 5 cut(s) 138, 201, 664, 819, 844
NlaIII CATG 2 cut(s) 410, 428
NlaIV GGNNCC 2 cut(s) 171, 315
NmuCI GTSAC 1 cut(s) 540
NsbI TGCGCA 1 cut(s) 213
PagI TCATGA 1 cut(s) 424
PauI GCGCGC 1 cut(s) 779
PfeI GAWTC 4 cut(s) 119, 124, 403, 740
PkrI GCNGC 1 cut(s) 831
PpuMI RGGWCCY 1 cut(s) 170
PshBI ATTAAT 1 cut(s) 533
PsiI TTATAA 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 171, 315
PspPI GGNCC 3 cut(s) 170, 350, 797
PspPPI RGGWCCY 1 cut(s) 170
PstI CTGCAG 1 cut(s) 831
PteI GCGCGC 1 cut(s) 779
RsaI GTAC 3 cut(s) 15, 218, 683
RsaNI GTAC 3 cut(s) 14, 217, 682
RseI CAYNNNNRTG 1 cut(s) 630
SaqAI TTAA 6 cut(s) 156, 287, 366, 437, 533, 813
SatI GCNGC 1 cut(s) 830
Sau3AI GATC 5 cut(s) 138, 201, 664, 819, 844
Sau96I GGNCC 3 cut(s) 170, 350, 797
ScaI AGTACT 2 cut(s) 15, 218
ScrFI CCNGG 1 cut(s) 311
SfaNI GCATC 3 cut(s) 76, 310, 631
SfcI CTRYAG 2 cut(s) 785, 827
SinI GGWCC 3 cut(s) 170, 350, 797
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
Sse9I AATT 7 cut(s) 18, 275, 288, 330, 562, 815, 898
SsiI CCGC 3 cut(s) 89, 104, 855
SspI AATATT 1 cut(s) 943
SspMI CTAG 2 cut(s) 165, 849
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 2 cut(s) 457, 735
TaaI ACNGT 1 cut(s) 540
TaqI TCGA 2 cut(s) 122, 197
TasI AATT 7 cut(s) 18, 275, 288, 330, 562, 815, 898
TatI WGTACW 3 cut(s) 13, 216, 681
TfiI GAWTC 4 cut(s) 119, 124, 403, 740
Tru1I TTAA 6 cut(s) 156, 287, 366, 437, 533, 813
Tru9I TTAA 6 cut(s) 156, 287, 366, 437, 533, 813
TscAI CASTG 2 cut(s) 635, 667
TseFI GTSAC 1 cut(s) 540
TseI GCWGC 1 cut(s) 829
Tsp45I GTSAC 1 cut(s) 540
TspDTI ATGAA 4 cut(s) 17, 287, 891, 910
TspGWI ACGGA 1 cut(s) 403
TspRI CASTG 2 cut(s) 635, 667
VpaK11BI GGWCC 3 cut(s) 170, 350, 797
VspI ATTAAT 1 cut(s) 533
XapI RAATTY 2 cut(s) 275, 562
XspI CTAG 2 cut(s) 165, 849
ZrmI AGTACT 2 cut(s) 15, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.