RchiOBHm_Chr7g0228521

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002361
Physical Location & Seq
Forward (+)
51865547 .. 51867239
1693 bp
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UTR
Exon/CDS
Intron
PRQ20471

Sequence Viewer

Length: 705 bp
ATGTGTGCTAAGGTTTATGCTTTTTGTTGTTTTGGTGGTTTTCAGAGGGGTCCTGCTTTTATAGAGGAACTACTTTCGGTGATCCCAAATGCGCAGTACTATAAAAGAGACACTTATGACTTGAAAAAGATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCAATCACCGGGAACCAGATGCTCTCCTAATTATTGGCTTACCTAATGGACCTACTGCCCATTTTAAGCTCTCAAAGCTTGTTTTACGGAAGGATATCAAGAATCATGGAAATCCAACCAGTCATGAGCTTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCGTATTGGGAGGATGGATTACCTTCAAGCTCCTAATGGTTTTCTTCTTTCACCTACTTTCTTCAGATTAATACAGTCACTTTTCCCTCAAGAACCAAATTTTAGTGGTCGGAGAGTTGTAACTTTCCACAACCAACGAGATTTTATATTCTTCCGGCATCATCGGTACATTTTTGAAACCAAAGAGACTAAACAGGCTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAGCTGAAGCTATTACTGAAGCAAAACCATTTGCGCGCCTACAGGAATGTGGTCCTCGTTTTACCCTTAAATTGATCAGTCTGCAGCACGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

234

Amino Acids

27.05

Weight (kDa)

9.55

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 18 - 219 9.3e-30 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 93
AccII CGCG 1 cut(s) 616
AciI CCGC 1 cut(s) 690
AclWI GGATC 2 cut(s) 76, 674
AcsI RAATTY 2 cut(s) 155, 448
AcuI CTGAAG 4 cut(s) 397, 570, 606, 618
AfaI GTAC 2 cut(s) 98, 518
AfiI CCNNNNNNNGG 2 cut(s) 189, 689
AgsI TTSAA 3 cut(s) 124, 377, 527
AluBI AGCT 7 cut(s) 250, 259, 310, 316, 380, 584, 590
AluI AGCT 7 cut(s) 250, 259, 310, 316, 380, 584, 590
Alw26I GTCTC 2 cut(s) 102, 530
AlwI GGATC 2 cut(s) 76, 674
ApeKI GCWGC 1 cut(s) 664
ApoI RAATTY 2 cut(s) 155, 448
AseI ATTAAT 1 cut(s) 419
AspLEI GCGC 3 cut(s) 94, 616, 618
AspS9I GGNCC 3 cut(s) 50, 230, 632
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 3 cut(s) 91, 179, 393
AvaII GGWCC 3 cut(s) 50, 230, 632
BbvI GCAGC 1 cut(s) 676
BccI CCATC 1 cut(s) 358
BclI TGATCA 1 cut(s) 654
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 2 cut(s) 102, 530
BfaI CTAG 1 cut(s) 684
BfmI CTRYAG 2 cut(s) 620, 662
BisI GCNGC 1 cut(s) 665
BlsI GCNGC 1 cut(s) 666
BmcAI AGTACT 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 3 cut(s) 50, 230, 632
BmgT120I GGNCC 3 cut(s) 50, 230, 632
BmiI GGNNCC 2 cut(s) 51, 195
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 2 cut(s) 190, 517
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 2 cut(s) 332, 423
BpuMI CCSGG 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 343, 570
BsaXI ACNNNNNCTCC 1 cut(s) 686
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 689
Bse1I ACTGG 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 343, 570
BseGI GGATG 1 cut(s) 369
BseLI CCNNNNNNNGG 2 cut(s) 189, 689
BseNI ACTGG 1 cut(s) 300
BsePI GCGCGC 1 cut(s) 614
BseXI GCAGC 1 cut(s) 676
Bsh1236I CGCG 1 cut(s) 616
BsiSI CCGG 2 cut(s) 190, 505
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 2 cut(s) 189, 689
BsmAI GTCTC 2 cut(s) 102, 530
BsmFI GGGAC 1 cut(s) 685
Bsp143I GATC 3 cut(s) 81, 654, 679
BspACI CCGC 1 cut(s) 690
BspFNI CGCG 1 cut(s) 616
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 51, 195
BspMAI CTGCAG 1 cut(s) 666
BspPI GGATC 2 cut(s) 76, 674
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 2 cut(s) 343, 570
BssHII GCGCGC 1 cut(s) 614
BssMI GATC 3 cut(s) 81, 654, 679
BssT1I CCWWGG 2 cut(s) 343, 570
Bst4CI ACNGT 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 616
BstDEI CTNAG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 369
BstFNI CGCG 1 cut(s) 616
BstHHI GCGC 3 cut(s) 94, 616, 618
BstKTI GATC 3 cut(s) 84, 657, 682
BstMAI GTCTC 2 cut(s) 102, 530
BstMBI GATC 3 cut(s) 81, 654, 679
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 2 cut(s) 620, 662
BstUI CGCG 1 cut(s) 616
BstV1I GCAGC 1 cut(s) 676
BtsCI GGATG 1 cut(s) 369
Cac8I GCNNGC 1 cut(s) 616
CciI TCATGA 1 cut(s) 304
CfoI GCGC 3 cut(s) 94, 616, 618
Cfr13I GGNCC 3 cut(s) 50, 230, 632
Csp6I GTAC 2 cut(s) 97, 517
CviAII CATG 2 cut(s) 287, 305
CviJI RGCY 9 cut(s) 219, 250, 259, 310, 316, 380, 548, 584, 590
CviKI_1 RGCY 9 cut(s) 219, 250, 259, 310, 316, 380, 548, 584, 590
CviQI GTAC 2 cut(s) 97, 517
DdeI CTNAG 1 cut(s) 9
DpnI GATC 3 cut(s) 83, 656, 681
DpnII GATC 3 cut(s) 81, 654, 679
Eco130I CCWWGG 2 cut(s) 343, 570
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 3 cut(s) 50, 230, 632
Eco57I CTGAAG 4 cut(s) 397, 570, 606, 618
EcoO109I RGGNCCY 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 155
EcoRV GATATC 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 343, 570
ErhI CCWWGG 2 cut(s) 343, 570
FaeI CATG 2 cut(s) 290, 308
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FaqI GGGAC 1 cut(s) 685
FatI CATG 2 cut(s) 286, 304
FauI CCCGC 1 cut(s) 683
FbaI TGATCA 1 cut(s) 654
Fnu4HI GCNGC 1 cut(s) 665
FokI GGATG 1 cut(s) 376
Fsp4HI GCNGC 1 cut(s) 665
FspBI CTAG 1 cut(s) 684
FspI TGCGCA 1 cut(s) 93
GlaI GCGC 3 cut(s) 93, 615, 617
GluI GCNGC 1 cut(s) 665
HapII CCGG 2 cut(s) 190, 505
HhaI GCGC 3 cut(s) 94, 616, 618
Hin1II CATG 2 cut(s) 290, 308
Hin6I GCGC 3 cut(s) 92, 614, 616
HinP1I GCGC 3 cut(s) 92, 614, 616
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 2 cut(s) 283, 575
HpaII CCGG 2 cut(s) 190, 505
HphI GGTGA 3 cut(s) 91, 179, 393
Hpy188I TCNGA 3 cut(s) 45, 416, 462
Hpy188III TCNNGA 3 cut(s) 280, 305, 440
HpyAV CCTTC 2 cut(s) 265, 383
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4V TGCA 2 cut(s) 143, 664
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 2 cut(s) 290, 308
HspAI GCGC 3 cut(s) 92, 614, 616
Ksp22I TGATCA 1 cut(s) 654
Kzo9I GATC 3 cut(s) 81, 654, 679
LmnI GCTCC 1 cut(s) 385
LpnPI CCDG 7 cut(s) 66, 203, 210, 313, 518, 530, 608
Lsp1109I GCAGC 1 cut(s) 676
LweI GCATC 2 cut(s) 190, 517
MaeI CTAG 1 cut(s) 684
MaeIII GTNAC 2 cut(s) 426, 469
MalI GATC 3 cut(s) 83, 656, 681
MboI GATC 3 cut(s) 81, 654, 679
MboII GAAGA 3 cut(s) 386, 403, 493
MluCI AATT 5 cut(s) 155, 168, 210, 448, 650
MmeI TCCRAC 2 cut(s) 320, 440
MnlI CCTC 6 cut(s) 39, 58, 354, 447, 645, 680
MseI TTAA 5 cut(s) 167, 246, 323, 419, 648
MspI CCGG 2 cut(s) 190, 505
MspR9I CCNGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 616
MwoI GCNNNNNNNGC 1 cut(s) 256
NciI CCSGG 1 cut(s) 191
NdeII GATC 3 cut(s) 81, 654, 679
NlaIII CATG 2 cut(s) 290, 308
NlaIV GGNNCC 2 cut(s) 51, 195
NmuCI GTSAC 1 cut(s) 426
NsbI TGCGCA 1 cut(s) 93
PagI TCATGA 1 cut(s) 304
PauI GCGCGC 1 cut(s) 614
PfeI GAWTC 2 cut(s) 283, 575
PkrI GCNGC 1 cut(s) 666
PpuMI RGGWCCY 1 cut(s) 50
PshBI ATTAAT 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 50
PspN4I GGNNCC 2 cut(s) 51, 195
PspPI GGNCC 3 cut(s) 50, 230, 632
PspPPI RGGWCCY 1 cut(s) 50
PstI CTGCAG 1 cut(s) 666
PteI GCGCGC 1 cut(s) 614
RsaI GTAC 2 cut(s) 98, 518
RsaNI GTAC 2 cut(s) 97, 517
SaqAI TTAA 5 cut(s) 167, 246, 323, 419, 648
SatI GCNGC 1 cut(s) 665
Sau3AI GATC 3 cut(s) 81, 654, 679
Sau96I GGNCC 3 cut(s) 50, 230, 632
ScaI AGTACT 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 191
SfaNI GCATC 2 cut(s) 190, 517
SfcI CTRYAG 2 cut(s) 620, 662
SinI GGWCC 3 cut(s) 50, 230, 632
SmlI CTYRAG 2 cut(s) 311, 438
SmoI CTYRAG 2 cut(s) 311, 438
Sse9I AATT 5 cut(s) 155, 168, 210, 448, 650
SsiI CCGC 1 cut(s) 690
SspMI CTAG 1 cut(s) 684
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 2 cut(s) 343, 570
TaaI ACNGT 1 cut(s) 426
TasI AATT 5 cut(s) 155, 168, 210, 448, 650
TatI WGTACW 1 cut(s) 96
TfiI GAWTC 2 cut(s) 283, 575
Tru1I TTAA 5 cut(s) 167, 246, 323, 419, 648
Tru9I TTAA 5 cut(s) 167, 246, 323, 419, 648
TseFI GTSAC 1 cut(s) 426
TseI GCWGC 1 cut(s) 664
Tsp45I GTSAC 1 cut(s) 426
TspDTI ATGAA 1 cut(s) 167
TspGWI ACGGA 1 cut(s) 283
VpaK11BI GGWCC 3 cut(s) 50, 230, 632
VspI ATTAAT 1 cut(s) 419
XapI RAATTY 2 cut(s) 155, 448
XspI CTAG 1 cut(s) 684
ZrmI AGTACT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.