RchiOBHm_Chr3g0493911

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002361
Physical Location & Seq
Forward (+)
41501552 .. 41503218
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45660

Sequence Viewer

Length: 681 bp
ATGTGTGCTAAGGTTTATGCTTTTTGTTGTTTTGGTGGTTTTCAGAGGGGTCCTGCTTTTATAGAGGAACTACTTTCGATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCAATCGCCGAGAACCAGATGTTCTCCTAATTATTGGCTTACCTAATGGACCTACTGCCCATTTTAAGCTCTCAAAGCTTGTTTTACGGAAGGATATCAAGAATCATGGAAATCCAACCAATCATGAGCCTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCGTATTGGGAGGATTGATTACCTTCAAGCTCCTAATGGTTTTCTTCTTTCACCTGCTTTCTTCAGATTAATACAGTCACTTTTCCCTCAAGAACCAAATTTTCGTGGTCGGCGAGTTGTAACTTTCCACAACCAGCAAGATTTTATATTCTTCCGGCATCATCGGGCAAAAAGACCAAGGATTCCAAAGCTGACACTATTGCTGAAGCAAAACCATTTGCGCGCCTACAGGTTGGAATGTGGTCCTCGTTTTACCCTTAAATTGATCAGTCTACAGCACGGGACATTTGATCCTAGAGGTGGGGAGTTTGAGTGGGTTCACAAGGTAATCCACTTATCAGTCAATTCATTTCAGTATATTGATTTCATATCATTATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

226

Amino Acids

26.3

Weight (kDa)

10.06

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 31 - 189 2e-22 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 361
Acc36I ACCTGC 1 cut(s) 361
AccI GTMKAC 1 cut(s) 571
AccII CGCG 1 cut(s) 522
AclWI GGATC 1 cut(s) 584
AcsI RAATTY 2 cut(s) 104, 397
AcuI CTGAAG 2 cut(s) 346, 524
AfiI CCNNNNNNNGG 1 cut(s) 599
AgsI TTSAA 1 cut(s) 326
AluBI AGCT 5 cut(s) 199, 208, 265, 329, 490
AluI AGCT 5 cut(s) 199, 208, 265, 329, 490
AlwI GGATC 1 cut(s) 584
ApoI RAATTY 2 cut(s) 104, 397
AseI ATTAAT 1 cut(s) 368
AspLEI GCGC 2 cut(s) 522, 524
AspS9I GGNCC 3 cut(s) 50, 179, 542
AsuHPI GGTGA 1 cut(s) 342
AvaII GGWCC 3 cut(s) 50, 179, 542
BclI TGATCA 1 cut(s) 564
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 2 cut(s) 526, 572
BfuAI ACCTGC 1 cut(s) 361
Bme18I GGWCC 3 cut(s) 50, 179, 542
BmgT120I GGNCC 3 cut(s) 50, 179, 542
BmiI GGNNCC 1 cut(s) 51
BmsI GCATC 1 cut(s) 466
Bpu10I CCTNAGC 2 cut(s) 9, 261
BpuEI CTTGAG 1 cut(s) 372
BsaJI CCNNGG 2 cut(s) 292, 476
BsaXI ACNNNNNCTCC 2 cut(s) 596, 626
Bsc4I CCNNNNNNNGG 1 cut(s) 599
BseDI CCNNGG 2 cut(s) 292, 476
BseLI CCNNNNNNNGG 1 cut(s) 599
BseMII CTCAG 1 cut(s) 252
BsePI GCGCGC 1 cut(s) 520
Bsh1236I CGCG 1 cut(s) 522
BsiSI CCGG 1 cut(s) 454
BslFI GGGAC 1 cut(s) 595
BslI CCNNNNNNNGG 1 cut(s) 599
BsmFI GGGAC 1 cut(s) 595
Bsp143I GATC 2 cut(s) 564, 589
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 1 cut(s) 522
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 51
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 1 cut(s) 584
BssECI CCNNGG 2 cut(s) 292, 476
BssHII GCGCGC 1 cut(s) 520
BssMI GATC 2 cut(s) 564, 589
BssT1I CCWWGG 2 cut(s) 292, 476
Bst4CI ACNGT 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 522
BstDEI CTNAG 2 cut(s) 9, 261
BstFNI CGCG 1 cut(s) 522
BstHHI GCGC 2 cut(s) 522, 524
BstKTI GATC 2 cut(s) 567, 592
BstMBI GATC 2 cut(s) 564, 589
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstSFI CTRYAG 2 cut(s) 526, 572
BstUI CGCG 1 cut(s) 522
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 522
CciI TCATGA 1 cut(s) 253
CfoI GCGC 2 cut(s) 522, 524
Cfr13I GGNCC 3 cut(s) 50, 179, 542
CviAII CATG 2 cut(s) 236, 254
CviJI RGCY 7 cut(s) 168, 199, 208, 259, 265, 329, 490
CviKI_1 RGCY 7 cut(s) 168, 199, 208, 259, 265, 329, 490
DdeI CTNAG 2 cut(s) 9, 261
DpnI GATC 2 cut(s) 566, 591
DpnII GATC 2 cut(s) 564, 589
Eco130I CCWWGG 2 cut(s) 292, 476
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 3 cut(s) 50, 179, 542
Eco57I CTGAAG 2 cut(s) 346, 524
EcoO109I RGGNCCY 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 104
EcoRV GATATC 1 cut(s) 226
EcoT14I CCWWGG 2 cut(s) 292, 476
ErhI CCWWGG 2 cut(s) 292, 476
FaeI CATG 2 cut(s) 239, 257
FaqI GGGAC 1 cut(s) 595
FatI CATG 2 cut(s) 235, 253
FbaI TGATCA 1 cut(s) 564
FblI GTMKAC 1 cut(s) 571
FspBI CTAG 1 cut(s) 594
GlaI GCGC 2 cut(s) 521, 523
HapII CCGG 1 cut(s) 454
HhaI GCGC 2 cut(s) 522, 524
Hin1II CATG 2 cut(s) 239, 257
Hin6I GCGC 2 cut(s) 520, 522
HinP1I GCGC 2 cut(s) 520, 522
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 2 cut(s) 232, 481
HpaII CCGG 1 cut(s) 454
HphI GGTGA 1 cut(s) 342
Hpy166II GTNNAC 2 cut(s) 572, 619
Hpy188I TCNGA 2 cut(s) 45, 365
Hpy188III TCNNGA 3 cut(s) 229, 254, 389
Hpy8I GTNNAC 2 cut(s) 572, 619
HpyAV CCTTC 2 cut(s) 214, 332
HpyCH4III ACNGT 1 cut(s) 375
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 2 cut(s) 9, 261
Hsp92II CATG 2 cut(s) 239, 257
HspAI GCGC 2 cut(s) 520, 522
Ksp22I TGATCA 1 cut(s) 564
Kzo9I GATC 2 cut(s) 564, 589
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 7 cut(s) 66, 159, 273, 366, 446, 467, 514
LweI GCATC 1 cut(s) 466
MaeI CTAG 1 cut(s) 594
MaeIII GTNAC 2 cut(s) 375, 418
MalI GATC 2 cut(s) 566, 591
MboI GATC 2 cut(s) 564, 589
MboII GAAGA 3 cut(s) 335, 352, 442
MluCI AATT 6 cut(s) 104, 117, 159, 397, 560, 643
MmeI TCCRAC 2 cut(s) 269, 513
MnlI CCTC 6 cut(s) 39, 58, 303, 396, 555, 590
MseI TTAA 5 cut(s) 116, 195, 272, 368, 558
MspI CCGG 1 cut(s) 454
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 2 cut(s) 564, 589
NlaIII CATG 2 cut(s) 239, 257
NlaIV GGNNCC 1 cut(s) 51
NmeAIII GCCGAG 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 375
PagI TCATGA 1 cut(s) 253
PaqCI CACCTGC 1 cut(s) 361
PauI GCGCGC 1 cut(s) 520
PcsI WCGNNNNNNNCGW 1 cut(s) 409
PfeI GAWTC 2 cut(s) 232, 481
PpuMI RGGWCCY 1 cut(s) 50
PshBI ATTAAT 1 cut(s) 368
Psp5II RGGWCCY 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 3 cut(s) 50, 179, 542
PspPPI RGGWCCY 1 cut(s) 50
PteI GCGCGC 1 cut(s) 520
SaqAI TTAA 5 cut(s) 116, 195, 272, 368, 558
Sau3AI GATC 2 cut(s) 564, 589
Sau96I GGNCC 3 cut(s) 50, 179, 542
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 2 cut(s) 526, 572
SinI GGWCC 3 cut(s) 50, 179, 542
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
Sse9I AATT 6 cut(s) 104, 117, 159, 397, 560, 643
SspMI CTAG 1 cut(s) 594
StyI CCWWGG 2 cut(s) 292, 476
TaaI ACNGT 1 cut(s) 375
TaqI TCGA 1 cut(s) 77
TasI AATT 6 cut(s) 104, 117, 159, 397, 560, 643
TfiI GAWTC 2 cut(s) 232, 481
Tru1I TTAA 5 cut(s) 116, 195, 272, 368, 558
Tru9I TTAA 5 cut(s) 116, 195, 272, 368, 558
TseFI GTSAC 1 cut(s) 375
Tsp45I GTSAC 1 cut(s) 375
TspDTI ATGAA 3 cut(s) 116, 636, 655
TspGWI ACGGA 1 cut(s) 232
VpaK11BI GGWCC 3 cut(s) 50, 179, 542
VspI ATTAAT 1 cut(s) 368
XapI RAATTY 2 cut(s) 104, 397
XmiI GTMKAC 1 cut(s) 571
XspI CTAG 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.