Rh1AG105100

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002361
Physical Location & Seq
Reverse (-)
18213941 .. 18234581
20641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG105100.1

Sequence Viewer

Length: 852 bp
ATGAAGAGGGAAGTACTAATTGGGAAGAAGGATGAGATATATGGTGGCAGGTTATTAGCGAGTTTGCAGTTGTTTGTTATAAATGATGCGGATGAGTTTAGTGCGGTTTTGAAGCGTGAATCGAATCCGAAGATATTGATCACCACTTGCCGATTTAACTCTTCTAGGGGTCCTGCTTTTATAGAGGAACTACTTTCGGTGATCCCAAATGGGCAGTACTATAAAAGAGACACTTATAACTTGAAAAAGATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCAATCATCGGGAACCAGATGCTCTCCTAATTATTGGCTTACCTAATGGACCTACTGCCCATTTTAAGCTCTCAAAGCTTGTTTTACGGAAGGATATCAAGAATCATGGAAATCCAACTAGTCATGAGCTTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCGTATTGGGAGGATGGATTACCTTCAAGCTCCTAATGGTTTTCTTCTTTCACCTACTTTCTTCATATTAATACAGTCACTTTTCCCTCAAGAACCAAATTTTAGTGGTCGGCGAGTTGTAACTTTCCACAACCAACGAGATTTTATATTCTTCCGGCATCATCGGTGTGCCTCCTTTGCTATTTTTAGTTCTTGTAGTGATCCTTTCTTATACTTGTACATTTTTGAAACCAAAGAGACTAAACAGGCTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAGCTGACGCTATTACTGAAGCAAAACCATTTGCGCGCCTACAGGAGGCAGCCATCTACATATCTCAACTCAACTACACGAACGGACTCAGTGATCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

283

Amino Acids

32.48

Weight (kDa)

9.5

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 53 - 236 1.1e-20 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 80, 237
Acc36I ACCTGC 1 cut(s) 39
AccII CGCG 1 cut(s) 787
AciI CCGC 2 cut(s) 89, 104
AclWI GGATC 2 cut(s) 196, 665
AcsI RAATTY 2 cut(s) 275, 568
AcuI CTGAAG 2 cut(s) 741, 789
AfaI GTAC 3 cut(s) 15, 218, 689
AfiI CCNNNNNNNGG 2 cut(s) 309, 796
AgsI TTSAA 4 cut(s) 112, 244, 497, 698
AhlI ACTAGT 1 cut(s) 419
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 6 cut(s) 370, 379, 430, 436, 500, 755
AluI AGCT 6 cut(s) 370, 379, 430, 436, 500, 755
Alw26I GTCTC 2 cut(s) 222, 701
AlwI GGATC 2 cut(s) 196, 665
ApeKI GCWGC 1 cut(s) 800
ApoI RAATTY 2 cut(s) 275, 568
AseI ATTAAT 1 cut(s) 539
AspLEI GCGC 2 cut(s) 787, 789
AspS9I GGNCC 2 cut(s) 170, 350
AsuHPI GGTGA 3 cut(s) 133, 211, 513
AvaII GGWCC 2 cut(s) 170, 350
BbvI GCAGC 1 cut(s) 812
BccI CCATC 2 cut(s) 478, 812
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 222, 701
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 2 cut(s) 165, 420
BfmI CTRYAG 1 cut(s) 791
BfuAI ACCTGC 1 cut(s) 39
BisI GCNGC 1 cut(s) 801
BlsI GCNGC 1 cut(s) 802
BmcAI AGTACT 2 cut(s) 15, 218
Bme18I GGWCC 2 cut(s) 170, 350
BmgT120I GGNCC 2 cut(s) 170, 350
BmiI GGNNCC 2 cut(s) 171, 315
BmsI GCATC 3 cut(s) 76, 310, 637
BpuEI CTTGAG 2 cut(s) 452, 543
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 463, 741
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 796
Bse8I GATNNNNATC 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 463, 741
BseGI GGATG 3 cut(s) 37, 97, 489
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 2 cut(s) 309, 796
BsePI GCGCGC 1 cut(s) 785
BseXI GCAGC 1 cut(s) 812
Bsh1236I CGCG 1 cut(s) 787
BsiSI CCGG 1 cut(s) 625
BslI CCNNNNNNNGG 2 cut(s) 309, 796
BsmAI GTCTC 2 cut(s) 222, 701
Bsp1407I TGTACA 1 cut(s) 687
Bsp143I GATC 4 cut(s) 138, 201, 670, 844
BspACI CCGC 2 cut(s) 89, 104
BspCNI CTCAG 1 cut(s) 852
BspFNI CGCG 1 cut(s) 787
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 171, 315
BspMI ACCTGC 1 cut(s) 39
BspPI GGATC 2 cut(s) 196, 665
BsrGI TGTACA 1 cut(s) 687
BssECI CCNNGG 2 cut(s) 463, 741
BssHII GCGCGC 1 cut(s) 785
BssMI GATC 4 cut(s) 138, 201, 670, 844
BssT1I CCWWGG 2 cut(s) 463, 741
Bst4CI ACNGT 1 cut(s) 546
Bst6I CTCTTC 1 cut(s) 166
BstAUI TGTACA 1 cut(s) 687
BstC8I GCNNGC 1 cut(s) 787
BstDEI CTNAG 1 cut(s) 839
BstENI CCTNNNNNAGG 1 cut(s) 794
BstF5I GGATG 3 cut(s) 37, 97, 489
BstFNI CGCG 1 cut(s) 787
BstHHI GCGC 2 cut(s) 787, 789
BstKTI GATC 4 cut(s) 141, 204, 673, 847
BstMAI GTCTC 2 cut(s) 222, 701
BstMBI GATC 4 cut(s) 138, 201, 670, 844
BstMWI GCNNNNNNNGC 2 cut(s) 376, 647
BstSFI CTRYAG 1 cut(s) 791
BstUI CGCG 1 cut(s) 787
BstV1I GCAGC 1 cut(s) 812
BtsCI GGATG 3 cut(s) 37, 97, 489
BtsIMutI CAGTG 1 cut(s) 847
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 787
CciI TCATGA 1 cut(s) 424
CfoI GCGC 2 cut(s) 787, 789
Cfr13I GGNCC 2 cut(s) 170, 350
CseI GACGC 1 cut(s) 767
Csp6I GTAC 3 cut(s) 14, 217, 688
CviAII CATG 2 cut(s) 407, 425
CviJI RGCY 9 cut(s) 339, 370, 379, 430, 436, 500, 719, 755, 803
CviKI_1 RGCY 9 cut(s) 339, 370, 379, 430, 436, 500, 719, 755, 803
CviQI GTAC 3 cut(s) 14, 217, 688
DdeI CTNAG 1 cut(s) 839
DpnI GATC 4 cut(s) 140, 203, 672, 846
DpnII GATC 4 cut(s) 138, 201, 670, 844
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 463, 741
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 2 cut(s) 170, 350
Eco57I CTGAAG 2 cut(s) 741, 789
EcoNI CCTNNNNNAGG 1 cut(s) 794
EcoO109I RGGNCCY 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 275
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 2 cut(s) 463, 741
ErhI CCWWGG 2 cut(s) 463, 741
FaeI CATG 2 cut(s) 410, 428
FalI AAGNNNNNCTT 2 cut(s) 217, 249
FatI CATG 2 cut(s) 406, 424
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 801
FokI GGATG 3 cut(s) 44, 104, 496
Fsp4HI GCNGC 1 cut(s) 801
FspBI CTAG 2 cut(s) 165, 420
GlaI GCGC 2 cut(s) 786, 788
GluI GCNGC 1 cut(s) 801
HapII CCGG 1 cut(s) 625
HgaI GACGC 1 cut(s) 767
HhaI GCGC 2 cut(s) 787, 789
Hin1II CATG 2 cut(s) 410, 428
Hin6I GCGC 2 cut(s) 785, 787
HinP1I GCGC 2 cut(s) 785, 787
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 5 cut(s) 119, 124, 403, 746, 837
HpaII CCGG 1 cut(s) 625
HphI GGTGA 3 cut(s) 133, 211, 513
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 4 cut(s) 311, 400, 425, 560
HpyAV CCTTC 3 cut(s) 22, 385, 503
HpyCH4III ACNGT 1 cut(s) 546
HpyCH4V TGCA 2 cut(s) 67, 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 647
HpyF3I CTNAG 1 cut(s) 839
Hsp92II CATG 2 cut(s) 410, 428
HspAI GCGC 2 cut(s) 785, 787
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 4 cut(s) 138, 201, 670, 844
LmnI GCTCC 1 cut(s) 505
LpnPI CCDG 6 cut(s) 34, 186, 330, 638, 701, 779
Lsp1109I GCAGC 1 cut(s) 812
LweI GCATC 3 cut(s) 76, 310, 637
MaeI CTAG 2 cut(s) 165, 420
MaeIII GTNAC 2 cut(s) 546, 589
MalI GATC 4 cut(s) 140, 203, 672, 846
MboI GATC 4 cut(s) 138, 201, 670, 844
MboII GAAGA 7 cut(s) 16, 37, 142, 153, 506, 523, 613
MluCI AATT 5 cut(s) 18, 275, 288, 330, 568
MlyI GAGTC 1 cut(s) 831
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 5 cut(s) 178, 474, 567, 652, 790
MseI TTAA 6 cut(s) 156, 287, 366, 443, 539, 850
MslI CAYNNNNRTG 1 cut(s) 636
MspI CCGG 1 cut(s) 625
MvnI CGCG 1 cut(s) 787
MwoI GCNNNNNNNGC 2 cut(s) 376, 647
NdeII GATC 4 cut(s) 138, 201, 670, 844
NlaIII CATG 2 cut(s) 410, 428
NlaIV GGNNCC 2 cut(s) 171, 315
NmuCI GTSAC 1 cut(s) 546
PagI TCATGA 1 cut(s) 424
PauI GCGCGC 1 cut(s) 785
PfeI GAWTC 4 cut(s) 119, 124, 403, 746
PkrI GCNGC 1 cut(s) 802
PleI GAGTC 1 cut(s) 831
PpsI GAGTC 1 cut(s) 831
PpuMI RGGWCCY 1 cut(s) 170
PshBI ATTAAT 1 cut(s) 539
PsiI TTATAA 2 cut(s) 80, 237
Psp5II RGGWCCY 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 171, 315
PspPI GGNCC 2 cut(s) 170, 350
PspPPI RGGWCCY 1 cut(s) 170
PteI GCGCGC 1 cut(s) 785
RsaI GTAC 3 cut(s) 15, 218, 689
RsaNI GTAC 3 cut(s) 14, 217, 688
RseI CAYNNNNRTG 1 cut(s) 636
SaqAI TTAA 6 cut(s) 156, 287, 366, 443, 539, 850
SatI GCNGC 1 cut(s) 801
Sau3AI GATC 4 cut(s) 138, 201, 670, 844
Sau96I GGNCC 2 cut(s) 170, 350
ScaI AGTACT 2 cut(s) 15, 218
SchI GAGTC 1 cut(s) 831
SfaNI GCATC 3 cut(s) 76, 310, 637
SfcI CTRYAG 1 cut(s) 791
SinI GGWCC 2 cut(s) 170, 350
SmiMI CAYNNNNRTG 1 cut(s) 636
SmlI CTYRAG 2 cut(s) 431, 558
SmoI CTYRAG 2 cut(s) 431, 558
SpeI ACTAGT 1 cut(s) 419
Sse9I AATT 5 cut(s) 18, 275, 288, 330, 568
SsiI CCGC 2 cut(s) 89, 104
SspMI CTAG 2 cut(s) 165, 420
StyI CCWWGG 2 cut(s) 463, 741
TaaI ACNGT 1 cut(s) 546
TaqI TCGA 1 cut(s) 122
TasI AATT 5 cut(s) 18, 275, 288, 330, 568
TatI WGTACW 3 cut(s) 13, 216, 687
TfiI GAWTC 4 cut(s) 119, 124, 403, 746
Tru1I TTAA 6 cut(s) 156, 287, 366, 443, 539, 850
Tru9I TTAA 6 cut(s) 156, 287, 366, 443, 539, 850
TscAI CASTG 1 cut(s) 847
TseFI GTSAC 1 cut(s) 546
TseI GCWGC 1 cut(s) 800
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 3 cut(s) 17, 287, 523
TspGWI ACGGA 2 cut(s) 403, 849
TspRI CASTG 1 cut(s) 847
VpaK11BI GGWCC 2 cut(s) 170, 350
VspI ATTAAT 1 cut(s) 539
XagI CCTNNNNNAGG 1 cut(s) 794
XapI RAATTY 2 cut(s) 275, 568
XspI CTAG 2 cut(s) 165, 420
ZrmI AGTACT 2 cut(s) 15, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.