Rh6CG040900

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002361
Physical Location & Seq
Forward (+)
3950434 .. 3952715
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG040900.1

Sequence Viewer

Length: 870 bp
ATGAGTTCATTATTGCACATGAGGCAAAATTGGAACAGGTTATTAGCGAGTGATGAGATATATGGTGGCAGGTTATTAGCGAGTTTGCAGTTGTTTGTTAGAAATGATGCGGATGAGTTTAGTGCGGTTTTGAAGCGTGAATCGAATCCGAAGATATTGATCACCACTTGCCGATTTAACTCTTCTAGGGGTCCTGCTTTTATAGAGGAACTACTTTCGGTGATCCCAAATGCGCAGTTCTATAAAAGAGGCACTTATGACTTGAAAAAGATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCAATCGCCGGGAACCAGATGCTCTCCTAATTATTGGCTTACCTAATGGACCTACTGCCCATTTTAAGCTCTCAAAGCTTGTTTTACGGAAGGATATCAAGAATCATGGAAATCCAACCATTCATGAGCCTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCGTATTAGGAGATTAATACAGTCACTTTTCCCTCAAGAACCAAATTTTCGTGGTCGGCGAGTTGTAACTTTCCACAACCAGCAAGATTTTATATTCTTTCGGCATCATCGGTACATTTTTGAAACCAAAGAGACTAAACAGGTTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAGCTGACGCTATAACTGAAGCAAAACCATTTGCGCGCCTACAGGAATGTGGTCCTCGTTTTACCCTTAAATTGATCAGTCTGCAGCACGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGCTGCTACAACATTTAAATATGCTTTTGATTACAAACCATCCGGCATCTACTGGTACCCTTCACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

289

Amino Acids

33.48

Weight (kDa)

10.0

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 60 - 248 6.9e-34 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 234
Acc36I ACCTGC 1 cut(s) 60
Acc65I GGTACC 1 cut(s) 854
AccB1I GGYRCC 1 cut(s) 854
AccII CGCG 1 cut(s) 703
AciI CCGC 3 cut(s) 110, 125, 777
AclWI GGATC 2 cut(s) 217, 761
AcsI RAATTY 2 cut(s) 296, 535
AcuI CTGAAG 1 cut(s) 705
AfaI GTAC 2 cut(s) 605, 856
AfiI CCNNNNNNNGG 2 cut(s) 330, 776
AgsI TTSAA 4 cut(s) 133, 265, 614, 638
AluBI AGCT 5 cut(s) 391, 400, 457, 671, 802
AluI AGCT 5 cut(s) 391, 400, 457, 671, 802
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 2 cut(s) 217, 761
ApeKI GCWGC 2 cut(s) 751, 802
ApoI RAATTY 2 cut(s) 296, 535
AseI ATTAAT 1 cut(s) 506
Asp718I GGTACC 1 cut(s) 854
AspLEI GCGC 3 cut(s) 235, 703, 705
AspS9I GGNCC 3 cut(s) 191, 371, 719
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 2 cut(s) 154, 232
AvaII GGWCC 3 cut(s) 191, 371, 719
BanI GGYRCC 1 cut(s) 854
BbvI GCAGC 2 cut(s) 763, 789
BccI CCATC 1 cut(s) 846
BclI TGATCA 2 cut(s) 159, 741
BcnI CCSGG 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 3 cut(s) 186, 771, 868
BfmI CTRYAG 2 cut(s) 707, 749
BfuAI ACCTGC 1 cut(s) 60
BisI GCNGC 2 cut(s) 752, 803
BlsI GCNGC 2 cut(s) 753, 804
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 3 cut(s) 191, 371, 719
BmgT120I GGNCC 3 cut(s) 191, 371, 719
BmiI GGNNCC 3 cut(s) 192, 336, 856
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 4 cut(s) 97, 331, 604, 854
Bpu10I CCTNAGC 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 484, 657
BsaXI ACNNNNNCTCC 2 cut(s) 773, 803
Bsc4I CCNNNNNNNGG 2 cut(s) 330, 776
Bse1I ACTGG 1 cut(s) 856
Bse8I GATNNNNATC 1 cut(s) 158
BseDI CCNNGG 2 cut(s) 484, 657
BseGI GGATG 2 cut(s) 118, 838
BseJI GATNNNNATC 1 cut(s) 158
BseLI CCNNNNNNNGG 2 cut(s) 330, 776
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 1 cut(s) 856
BsePI GCGCGC 1 cut(s) 701
BseXI GCAGC 2 cut(s) 763, 789
Bsh1236I CGCG 1 cut(s) 703
BshNI GGYRCC 1 cut(s) 854
BsiSI CCGG 2 cut(s) 331, 842
BslFI GGGAC 1 cut(s) 772
BslI CCNNNNNNNGG 2 cut(s) 330, 776
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 1 cut(s) 772
Bsp143I GATC 4 cut(s) 159, 222, 741, 766
BspACI CCGC 3 cut(s) 110, 125, 777
BspCNI CTCAG 1 cut(s) 445
BspFNI CGCG 1 cut(s) 703
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 3 cut(s) 192, 336, 856
BspMAI CTGCAG 1 cut(s) 753
BspMI ACCTGC 1 cut(s) 60
BspPI GGATC 2 cut(s) 217, 761
BspT107I GGYRCC 1 cut(s) 854
BsrI ACTGG 1 cut(s) 856
BssECI CCNNGG 2 cut(s) 484, 657
BssHII GCGCGC 1 cut(s) 701
BssMI GATC 4 cut(s) 159, 222, 741, 766
BssT1I CCWWGG 2 cut(s) 484, 657
Bst4CI ACNGT 1 cut(s) 513
Bst6I CTCTTC 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 703
BstDEI CTNAG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 118, 838
BstFNI CGCG 1 cut(s) 703
BstHHI GCGC 3 cut(s) 235, 703, 705
BstKTI GATC 4 cut(s) 162, 225, 744, 769
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 4 cut(s) 159, 222, 741, 766
BstMWI GCNNNNNNNGC 2 cut(s) 22, 397
BstSCI CCNGG 1 cut(s) 330
BstSFI CTRYAG 2 cut(s) 707, 749
BstUI CGCG 1 cut(s) 703
BstV1I GCAGC 2 cut(s) 763, 789
BtsCI GGATG 2 cut(s) 118, 838
BveI ACCTGC 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 703
CciI TCATGA 1 cut(s) 445
CfoI GCGC 3 cut(s) 235, 703, 705
Cfr13I GGNCC 3 cut(s) 191, 371, 719
CseI GACGC 1 cut(s) 683
Csp6I GTAC 2 cut(s) 604, 855
CviAII CATG 3 cut(s) 19, 428, 446
CviJI RGCY 7 cut(s) 360, 391, 400, 451, 457, 671, 802
CviKI_1 RGCY 7 cut(s) 360, 391, 400, 451, 457, 671, 802
CviQI GTAC 2 cut(s) 604, 855
DdeI CTNAG 1 cut(s) 453
DpnI GATC 4 cut(s) 161, 224, 743, 768
DpnII GATC 4 cut(s) 159, 222, 741, 766
DraI TTTAAA 1 cut(s) 816
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
Eco130I CCWWGG 2 cut(s) 484, 657
Eco32I GATATC 1 cut(s) 418
Eco47I GGWCC 3 cut(s) 191, 371, 719
Eco57I CTGAAG 1 cut(s) 705
EcoO109I RGGNCCY 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 296
EcoRV GATATC 1 cut(s) 418
EcoT14I CCWWGG 2 cut(s) 484, 657
ErhI CCWWGG 2 cut(s) 484, 657
FaeI CATG 3 cut(s) 22, 431, 449
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FaqI GGGAC 1 cut(s) 772
FatI CATG 3 cut(s) 18, 427, 445
FauI CCCGC 1 cut(s) 770
FbaI TGATCA 2 cut(s) 159, 741
Fnu4HI GCNGC 2 cut(s) 752, 803
FokI GGATG 2 cut(s) 125, 825
Fsp4HI GCNGC 2 cut(s) 752, 803
FspBI CTAG 3 cut(s) 186, 771, 868
FspI TGCGCA 1 cut(s) 234
GlaI GCGC 3 cut(s) 234, 702, 704
GluI GCNGC 2 cut(s) 752, 803
HapII CCGG 2 cut(s) 331, 842
HgaI GACGC 1 cut(s) 683
HhaI GCGC 3 cut(s) 235, 703, 705
Hin1II CATG 3 cut(s) 22, 431, 449
Hin6I GCGC 3 cut(s) 233, 701, 703
HinP1I GCGC 3 cut(s) 233, 701, 703
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 4 cut(s) 140, 145, 424, 662
HpaII CCGG 2 cut(s) 331, 842
HphI GGTGA 2 cut(s) 154, 232
Hpy166II GTNNAC 1 cut(s) 796
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 3 cut(s) 421, 446, 527
Hpy8I GTNNAC 1 cut(s) 796
HpyAV CCTTC 2 cut(s) 406, 869
HpyCH4III ACNGT 1 cut(s) 513
HpyCH4V TGCA 4 cut(s) 16, 88, 284, 751
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 397
HpyF3I CTNAG 1 cut(s) 453
Hsp92II CATG 3 cut(s) 22, 431, 449
HspAI GCGC 3 cut(s) 233, 701, 703
KpnI GGTACC 1 cut(s) 858
Ksp22I TGATCA 2 cut(s) 159, 741
Kzo9I GATC 4 cut(s) 159, 222, 741, 766
Lsp1109I GCAGC 2 cut(s) 763, 789
LweI GCATC 4 cut(s) 97, 331, 604, 854
MaeI CTAG 3 cut(s) 186, 771, 868
MaeIII GTNAC 2 cut(s) 513, 556
MalI GATC 4 cut(s) 161, 224, 743, 768
MboI GATC 4 cut(s) 159, 222, 741, 766
MboII GAAGA 2 cut(s) 163, 174
MluCI AATT 6 cut(s) 28, 296, 309, 351, 535, 737
MmeI TCCRAC 1 cut(s) 461
MnlI CCTC 6 cut(s) 15, 199, 242, 534, 732, 767
MseI TTAA 7 cut(s) 177, 308, 387, 464, 506, 735, 815
MspI CCGG 2 cut(s) 331, 842
MspR9I CCNGG 1 cut(s) 332
MvnI CGCG 1 cut(s) 703
MwoI GCNNNNNNNGC 2 cut(s) 22, 397
NciI CCSGG 1 cut(s) 332
NdeII GATC 4 cut(s) 159, 222, 741, 766
NlaIII CATG 3 cut(s) 22, 431, 449
NlaIV GGNNCC 3 cut(s) 192, 336, 856
NmuCI GTSAC 1 cut(s) 513
NsbI TGCGCA 1 cut(s) 234
PagI TCATGA 1 cut(s) 445
PauI GCGCGC 1 cut(s) 701
PcsI WCGNNNNNNNCGW 1 cut(s) 547
PfeI GAWTC 4 cut(s) 140, 145, 424, 662
PkrI GCNGC 2 cut(s) 753, 804
PpuMI RGGWCCY 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 506
Psp5II RGGWCCY 1 cut(s) 191
PspN4I GGNNCC 3 cut(s) 192, 336, 856
PspPI GGNCC 3 cut(s) 191, 371, 719
PspPPI RGGWCCY 1 cut(s) 191
PstI CTGCAG 1 cut(s) 753
PteI GCGCGC 1 cut(s) 701
RsaI GTAC 2 cut(s) 605, 856
RsaNI GTAC 2 cut(s) 604, 855
SaqAI TTAA 7 cut(s) 177, 308, 387, 464, 506, 735, 815
SatI GCNGC 2 cut(s) 752, 803
Sau3AI GATC 4 cut(s) 159, 222, 741, 766
Sau96I GGNCC 3 cut(s) 191, 371, 719
ScrFI CCNGG 1 cut(s) 332
SfaNI GCATC 4 cut(s) 97, 331, 604, 854
SfcI CTRYAG 2 cut(s) 707, 749
SinI GGWCC 3 cut(s) 191, 371, 719
SmiI ATTTAAAT 1 cut(s) 816
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 6 cut(s) 28, 296, 309, 351, 535, 737
SsiI CCGC 3 cut(s) 110, 125, 777
SspMI CTAG 3 cut(s) 186, 771, 868
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 2 cut(s) 484, 657
SwaI ATTTAAAT 1 cut(s) 816
TaaI ACNGT 1 cut(s) 513
TaqI TCGA 1 cut(s) 143
TasI AATT 6 cut(s) 28, 296, 309, 351, 535, 737
TfiI GAWTC 4 cut(s) 140, 145, 424, 662
Tru1I TTAA 7 cut(s) 177, 308, 387, 464, 506, 735, 815
Tru9I TTAA 7 cut(s) 177, 308, 387, 464, 506, 735, 815
TseFI GTSAC 1 cut(s) 513
TseI GCWGC 2 cut(s) 751, 802
Tsp45I GTSAC 1 cut(s) 513
TspDTI ATGAA 2 cut(s) 308, 434
TspGWI ACGGA 1 cut(s) 424
VpaK11BI GGWCC 3 cut(s) 191, 371, 719
VspI ATTAAT 1 cut(s) 506
XapI RAATTY 2 cut(s) 296, 535
XspI CTAG 3 cut(s) 186, 771, 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.