RchiOBHm_Chr6g0259761

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002361
Physical Location & Seq
Forward (+)
14988803 .. 14990456
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23293

Sequence Viewer

Length: 639 bp
ATGACAAGAGGAACTACTTCGGTGATCCCAAATGCGCAGTACTATAAAAGAGGCACTTATGACTTGAAAAAGATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCAATCGCCGGGAACCAGATGCTCTCCTAATTATTGGCTTACCTAATGGACCTACTGCCCATTTTAAGCTCTCAAAGCTTGTTTTACGGAAGGGTATAAAGAATCATGGAAATCCAACCAGTCATGAGCCTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCGTATTGGGAGGATGGATTACCTTCAAGCTCCTAATGGTTTTCTTCTTTCACCTGCTTTCTTCAGATTAATACAGTCACTTTTCCCTCAAGAACCAAATTTTCGTGGTCGGCGAGTTGTAACTTTCCACAACCAGCGAGATTTTATATTCTTCTGGCATCATCGGTGTGCCTCCTTTGCTATTTTTAGTTCTTGCAGTGATCCTTTCTTATACTTGTACATTTTTGAAACCAAAGAGACTAAACAGGCTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAGCTGACGCTATTACTGAAGCAAAACCATTTGCGCGCCTACAGTCTGCAGCACGGGACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

212

Amino Acids

24.4

Weight (kDa)

10.0

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 7 - 176 2.5e-18 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 355
Acc16I TGCGCA 1 cut(s) 36
Acc36I ACCTGC 1 cut(s) 355
AccII CGCG 1 cut(s) 610
AclWI GGATC 2 cut(s) 19, 488
AcsI RAATTY 2 cut(s) 98, 391
AcuI CTGAAG 3 cut(s) 340, 564, 612
AfaI GTAC 2 cut(s) 41, 512
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 3 cut(s) 67, 320, 521
AluBI AGCT 5 cut(s) 193, 202, 259, 323, 578
AluI AGCT 5 cut(s) 193, 202, 259, 323, 578
Alw26I GTCTC 1 cut(s) 524
AlwI GGATC 2 cut(s) 19, 488
ApeKI GCWGC 1 cut(s) 623
ApoI RAATTY 2 cut(s) 98, 391
AseI ATTAAT 1 cut(s) 362
Asp700I GAANNNNTTC 1 cut(s) 16
AspLEI GCGC 3 cut(s) 37, 610, 612
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 34, 336
AvaII GGWCC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 635
BccI CCATC 1 cut(s) 301
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 524
BfmI CTRYAG 2 cut(s) 614, 621
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 1 cut(s) 624
BlsI GCNGC 1 cut(s) 625
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 2 cut(s) 133, 460
Bpu10I CCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 286, 564
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 286, 564
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 243
BsePI GCGCGC 1 cut(s) 608
BseXI GCAGC 1 cut(s) 635
Bsh1236I CGCG 1 cut(s) 610
BsiSI CCGG 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 524
Bsp1407I TGTACA 1 cut(s) 510
Bsp143I GATC 2 cut(s) 24, 493
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 1 cut(s) 610
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 625
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 2 cut(s) 19, 488
BsrGI TGTACA 1 cut(s) 510
BsrI ACTGG 1 cut(s) 243
BssECI CCNNGG 2 cut(s) 286, 564
BssHII GCGCGC 1 cut(s) 608
BssMI GATC 2 cut(s) 24, 493
BssT1I CCWWGG 2 cut(s) 286, 564
Bst4CI ACNGT 2 cut(s) 369, 618
BstAUI TGTACA 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 610
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 312
BstFNI CGCG 1 cut(s) 610
BstHHI GCGC 3 cut(s) 37, 610, 612
BstKTI GATC 2 cut(s) 27, 496
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 2 cut(s) 24, 493
BstMWI GCNNNNNNNGC 2 cut(s) 199, 470
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 2 cut(s) 614, 621
BstUI CGCG 1 cut(s) 610
BstV1I GCAGC 1 cut(s) 635
BtsCI GGATG 1 cut(s) 312
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 496
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 610
CciI TCATGA 1 cut(s) 247
CfoI GCGC 3 cut(s) 37, 610, 612
Cfr13I GGNCC 1 cut(s) 173
CseI GACGC 1 cut(s) 590
Csp6I GTAC 2 cut(s) 40, 511
CviAII CATG 2 cut(s) 230, 248
CviJI RGCY 8 cut(s) 162, 193, 202, 253, 259, 323, 542, 578
CviKI_1 RGCY 8 cut(s) 162, 193, 202, 253, 259, 323, 542, 578
CviQI GTAC 2 cut(s) 40, 511
DdeI CTNAG 1 cut(s) 255
DpnI GATC 2 cut(s) 26, 495
DpnII GATC 2 cut(s) 24, 493
Eco130I CCWWGG 2 cut(s) 286, 564
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 3 cut(s) 340, 564, 612
EcoRI GAATTC 1 cut(s) 98
EcoT14I CCWWGG 2 cut(s) 286, 564
ErhI CCWWGG 2 cut(s) 286, 564
FaeI CATG 2 cut(s) 233, 251
FalI AAGNNNNNCTT 2 cut(s) 40, 72
FatI CATG 2 cut(s) 229, 247
Fnu4HI GCNGC 1 cut(s) 624
FokI GGATG 1 cut(s) 319
Fsp4HI GCNGC 1 cut(s) 624
FspI TGCGCA 1 cut(s) 36
GlaI GCGC 3 cut(s) 36, 609, 611
GluI GCNGC 1 cut(s) 624
HapII CCGG 1 cut(s) 133
HgaI GACGC 1 cut(s) 590
HhaI GCGC 3 cut(s) 37, 610, 612
Hin1II CATG 2 cut(s) 233, 251
Hin6I GCGC 3 cut(s) 35, 608, 610
HinP1I GCGC 3 cut(s) 35, 608, 610
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 2 cut(s) 226, 569
HpaII CCGG 1 cut(s) 133
HphI GGTGA 2 cut(s) 34, 336
Hpy188I TCNGA 1 cut(s) 359
Hpy188III TCNNGA 2 cut(s) 248, 383
HpyAV CCTTC 2 cut(s) 208, 326
HpyCH4III ACNGT 2 cut(s) 369, 618
HpyCH4V TGCA 3 cut(s) 86, 489, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 470
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 2 cut(s) 233, 251
HspAI GCGC 3 cut(s) 35, 608, 610
Kzo9I GATC 2 cut(s) 24, 493
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 8 cut(s) 146, 153, 256, 267, 360, 433, 440, 524
Lsp1109I GCAGC 1 cut(s) 635
LweI GCATC 2 cut(s) 133, 460
MaeIII GTNAC 2 cut(s) 369, 412
MalI GATC 2 cut(s) 26, 495
MboI GATC 2 cut(s) 24, 493
MboII GAAGA 3 cut(s) 329, 346, 436
MluCI AATT 4 cut(s) 98, 111, 153, 391
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 4 cut(s) 44, 297, 390, 475
MroXI GAANNNNTTC 1 cut(s) 16
MseI TTAA 4 cut(s) 110, 189, 266, 362
MslI CAYNNNNRTG 1 cut(s) 459
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 134
MvnI CGCG 1 cut(s) 610
MwoI GCNNNNNNNGC 2 cut(s) 199, 470
NciI CCSGG 1 cut(s) 134
NdeII GATC 2 cut(s) 24, 493
NlaIII CATG 2 cut(s) 233, 251
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 369
NsbI TGCGCA 1 cut(s) 36
PagI TCATGA 1 cut(s) 247
PaqCI CACCTGC 1 cut(s) 355
PauI GCGCGC 1 cut(s) 608
PcsI WCGNNNNNNNCGW 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 16
PfeI GAWTC 2 cut(s) 226, 569
PkrI GCNGC 1 cut(s) 625
PshBI ATTAAT 1 cut(s) 362
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 173
PstI CTGCAG 1 cut(s) 625
PteI GCGCGC 1 cut(s) 608
RsaI GTAC 2 cut(s) 41, 512
RsaNI GTAC 2 cut(s) 40, 511
RseI CAYNNNNRTG 1 cut(s) 459
SaqAI TTAA 4 cut(s) 110, 189, 266, 362
SatI GCNGC 1 cut(s) 624
Sau3AI GATC 2 cut(s) 24, 493
Sau96I GGNCC 1 cut(s) 173
ScaI AGTACT 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 134
SetI ASST 9 cut(s) 169, 178, 195, 204, 261, 318, 325, 349, 580
SfaNI GCATC 2 cut(s) 133, 460
SfcI CTRYAG 2 cut(s) 614, 621
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
Sse9I AATT 4 cut(s) 98, 111, 153, 391
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 2 cut(s) 286, 564
TaaI ACNGT 2 cut(s) 369, 618
TasI AATT 4 cut(s) 98, 111, 153, 391
TatI WGTACW 2 cut(s) 39, 510
TfiI GAWTC 2 cut(s) 226, 569
Tru1I TTAA 4 cut(s) 110, 189, 266, 362
Tru9I TTAA 4 cut(s) 110, 189, 266, 362
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 1 cut(s) 369
TseI GCWGC 1 cut(s) 623
Tsp45I GTSAC 1 cut(s) 369
TspDTI ATGAA 1 cut(s) 110
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 1 cut(s) 496
VpaK11BI GGWCC 1 cut(s) 173
VspI ATTAAT 1 cut(s) 362
XapI RAATTY 2 cut(s) 98, 391
XmnI GAANNNNTTC 1 cut(s) 16
ZrmI AGTACT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.