Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002361

Physical Location & Seq

Genomic Coordinates Reverse (-)

18432183 .. 18435032

Gene Structure 2850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15940.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGAGGCGATAACAATAAAAGGAAGCGAAGCGAAAGCGAAGGAGGAGGAGAAGAACCGCCGCCGGAGAAGAAGATGGAGATTCTGCCGTCGATGATAAAGAACAAGGAGAAAAGGTCGGCGGTGCACGCCAAGCTCAAGCAGCAGAAGAAGCTCGAAAAGCGCAAGAAGGCCAAAGCCCGCGACGCCGCCGAGAAGCGCGCTCTCGAGCTCGGCGAGGAGCCGCCGGCGAAGAAGATTCCCAAGACGATTGAGAACACCAGGGAAGTCGATGAGACTATTTGTAAGCCTGACGACGAAGAGCTGTTTGCTGGAAATGATGCCGATGAATTCAGTTCGATTTTAAAGCGCGAAATGTATCCAAAGATATTAATCACCACTTGCCGTTTCCATTCTTCTAGGGGGCCTGAGTTTATAAAGGAACTACTTTCAGTGATCCATAATACAACCTACTACAAAAGAGGAACATATGACTTGAAAAAGATTGTAGAGTACGCAAATAAGAAGGACTTCACTTCTCTAATTGTTGTTCACACCAATCGCAGAGAACCAGATGCTCTCCTAATAATTGGCTTACCTGCCGGGCCTACTGCCCATTTTAAGCTCTCAAAGCTTGTTTTACGCAAGGATATCAAGAATCATGGAAATCCAACCAGTCATGAGCCCGAGCTTGTGCTGAACAACTTTACAACACGCCTTGGTCATCGAATTGGAAGATTAATTCAGTCACTTTTCCCACAAGAACCAAACTTTCGTGGTCGGCGAGTTGTAACTTTTCACAACCAGCGAGATTTTATATTCTTCCGGCATCATCGGTATATCTTTGAAGAAAAAGAGACTAAACAGATCGAGTCCAAAGGTAAAAAGACCAAGGATGCAACTGGTGAGAGCGGACCGAAAGGGAAAGTAATTGCTCGCCTACAGGAGTGTGGCCCTCGTTTCACCCTTAAACTAATTAGTCTGCAGCATGGGACCTTCGATACTAAAGGCGGGGAATATGAGTGGGTTCACAAGCCGGAAATGGACACAAGCAGAAGGAGATTTTTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

351

Amino Acids

40.44

Weight (kDa)

9.72

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01560
fragaria_vesca	FvH4_7g18100 FvH4_7g18130
malus_domestica	MD01G1095300.v1.1 MD07G1164400.v1.1
prunus_persica	Prupe.2G203400_v2.0.a1
pyrus_communis	pycom01g11760 pycom07g15940
rosa_chinensis	RchiOBHm_Chr1g0321231 RchiOBHm_Chr1g0346391 RchiOBHm_Chr1g0361751 RchiOBHm_Chr2g0110161 RchiOBHm_Chr3g0479951 RchiOBHm_Chr3g0493911 RchiOBHm_Chr4g0406331 RchiOBHm_Chr5g0043791 RchiOBHm_Chr5g0052991 RchiOBHm_Chr5g0055421 RchiOBHm_Chr6g0259761 RchiOBHm_Chr7g0204491 RchiOBHm_Chr7g0219071 RchiOBHm_Chr7g0228521
rosa_laevigata	RLG00000027705
rosa_multiflora	Rmu_sc0005733.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294720
rosa_rugosa	Rorug01G0291200
rosa_samantha	Rh1AG105100 Rh1AG301600 Rh1BG264500 Rh1CG282900 Rh1DG144800 Rh1DG294500 Rh5BG300200 Rh5BG351900 Rh5DG309100 Rh5DG368200 Rh6AG038900 Rh6AG080500 Rh6CG040900
rosa_wichuraiana	Rw1G026720 Rw5G034050 Rw6G003520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	416
Acc36I	ACCTGC	1 cut(s)	586
AccBSI	CCGCTC	1 cut(s)	891
AccII	CGCG	3 cut(s)	183, 201, 351
AciI	CCGC	8 cut(s)	59, 62, 122, 181, 189, 224, 891, 990
AclWI	GGATC	1 cut(s)	430
AcsI	RAATTY	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	494
AgsI	TTSAA	2 cut(s)	478, 827
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	7 cut(s)	136, 154, 211, 304, 604, 613, 670
AluI	AGCT	7 cut(s)	136, 154, 211, 304, 604, 613, 670
Alw21I	GWGCWC	2 cut(s)	129, 213
Alw26I	GTCTC	2 cut(s)	269, 830
Alw44I	GTGCAC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	430
Ama87I	CYCGRG	2 cut(s)	206, 665
AoxI	GGCC	4 cut(s)	171, 404, 584, 931
ApaLI	GTGCAC	1 cut(s)	125
ApeKI	GCWGC	2 cut(s)	142, 964
ApoI	RAATTY	1 cut(s)	329
AseI	ATTAAT	2 cut(s)	371, 719
Asp700I	GAANNNNTTC	1 cut(s)	509
AspLEI	GCGC	4 cut(s)	165, 201, 203, 351
AspS9I	GGNCC	5 cut(s)	404, 584, 893, 932, 972
AsuC2I	CCSGG	1 cut(s)	583
AsuHPI	GGTGA	3 cut(s)	367, 896, 934
AvaI	CYCGRG	2 cut(s)	206, 665
AvaII	GGWCC	2 cut(s)	893, 972
BaeGI	GKGCMC	1 cut(s)	129
BanII	GRGCYC	2 cut(s)	213, 666
Bbv12I	GWGCWC	2 cut(s)	129, 213
BbvI	GCAGC	2 cut(s)	154, 976
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	2 cut(s)	73, 369
BciT130I	CCWGG	1 cut(s)	262
BciVI	GTATCC	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	583
BcoDI	GTCTC	2 cut(s)	269, 830
BfaI	CTAG	1 cut(s)	399
BfmI	CTRYAG	2 cut(s)	920, 962
BfuAI	ACCTGC	1 cut(s)	586
BfuI	GTATCC	1 cut(s)	369
BisI	GCNGC	5 cut(s)	62, 143, 189, 224, 965
BlsI	GCNGC	5 cut(s)	63, 144, 190, 225, 966
Bme1390I	CCNGG	2 cut(s)	262, 583
Bme18I	GGWCC	2 cut(s)	893, 972
BmeT110I	CYCGRG	2 cut(s)	206, 665
BmgT120I	GGNCC	5 cut(s)	404, 584, 893, 932, 972
BmiI	GGNNCC	3 cut(s)	222, 405, 973
BmrFI	CCNGG	2 cut(s)	262, 583
BmsI	GCATC	4 cut(s)	310, 544, 817, 865
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	583
BsaBI	GATNNNNATC	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	261, 697, 870
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	654, 886
Bse8I	GATNNNNATC	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	3 cut(s)	261, 697, 870
BseGI	GGATG	1 cut(s)	880
BseJI	GATNNNNATC	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	654, 886
BsePI	GCGCGC	1 cut(s)	199
BseRI	GAGGAG	3 cut(s)	60, 63, 233
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	154, 976
Bsh1236I	CGCG	3 cut(s)	183, 201, 351
BshFI	GGCC	4 cut(s)	173, 406, 586, 933
BsiHKAI	GWGCWC	2 cut(s)	129, 213
BsiHKCI	CYCGRG	2 cut(s)	206, 665
BsiSI	CCGG	5 cut(s)	65, 227, 582, 805, 1016
BslFI	GGGAC	1 cut(s)	985
BsmAI	GTCTC	2 cut(s)	269, 830
BsmFI	GGGAC	1 cut(s)	985
BsnI	GGCC	4 cut(s)	173, 406, 586, 933
BsoBI	CYCGRG	2 cut(s)	206, 665
Bsp1286I	GDGCHC	3 cut(s)	129, 213, 666
Bsp143I	GATC	2 cut(s)	435, 846
BspACI	CCGC	8 cut(s)	59, 62, 122, 181, 189, 224, 891, 990
BspANI	GGCC	4 cut(s)	173, 406, 586, 933
BspCNI	CTCAG	1 cut(s)	400
BspFNI	CGCG	3 cut(s)	183, 201, 351
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	3 cut(s)	222, 405, 973
BspMAI	CTGCAG	1 cut(s)	966
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	1 cut(s)	430
BspQI	GCTCTTC	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	891
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	654, 886
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	3 cut(s)	261, 697, 870
BssHII	GCGCGC	1 cut(s)	199
BssMI	GATC	2 cut(s)	435, 846
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	697, 870
Bst2UI	CCWGG	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	5 cut(s)	129, 181, 201, 228, 916
BstDEI	CTNAG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	880
BstFNI	CGCG	3 cut(s)	183, 201, 351
BstHHI	GCGC	4 cut(s)	165, 201, 203, 351
BstKTI	GATC	2 cut(s)	438, 849
BstMAI	GTCTC	2 cut(s)	269, 830
BstMBI	GATC	2 cut(s)	435, 846
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 133, 142, 151, 160, 185, 610
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	260, 581
BstSFI	CTRYAG	2 cut(s)	920, 962
BstSLI	GKGCMC	1 cut(s)	129
BstUI	CGCG	3 cut(s)	183, 201, 351
BstV1I	GCAGC	2 cut(s)	154, 976
BsuI	GTATCC	1 cut(s)	369
BsuRI	GGCC	4 cut(s)	173, 406, 586, 933
BtsCI	GGATG	1 cut(s)	880
BtsIMutI	CAGTG	1 cut(s)	438
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	5 cut(s)	129, 181, 201, 228, 916
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	4 cut(s)	165, 201, 203, 351
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	5 cut(s)	404, 584, 893, 932, 972
CpoI	CGGWCCG	1 cut(s)	893
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	493
CspI	CGGWCCG	1 cut(s)	893
CviAII	CATG	3 cut(s)	641, 659, 968
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	2 cut(s)	437, 848
DpnII	GATC	2 cut(s)	435, 846
DraI	TTTAAA	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	2 cut(s)	697, 870
Eco24I	GRGCYC	2 cut(s)	213, 666
Eco32I	GATATC	1 cut(s)	631
Eco47I	GGWCC	2 cut(s)	893, 972
Eco53kI	GAGCTC	1 cut(s)	211
Eco88I	CYCGRG	2 cut(s)	206, 665
EcoICRI	GAGCTC	1 cut(s)	211
EcoO109I	RGGNCCY	2 cut(s)	404, 972
EcoRI	GAATTC	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	260
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	2 cut(s)	697, 870
EcoT38I	GRGCYC	2 cut(s)	213, 666
ErhI	CCWWGG	2 cut(s)	697, 870
FaeI	CATG	3 cut(s)	644, 662, 971
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FaqI	GGGAC	1 cut(s)	985
FatI	CATG	3 cut(s)	640, 658, 967
FauI	CCCGC	2 cut(s)	188, 983
FauNDI	CATATG	1 cut(s)	469
Fnu4HI	GCNGC	5 cut(s)	62, 143, 189, 224, 965
FokI	GGATG	1 cut(s)	887
FriOI	GRGCYC	2 cut(s)	213, 666
Fsp4HI	GCNGC	5 cut(s)	62, 143, 189, 224, 965
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	4 cut(s)	164, 200, 202, 350
GluI	GCNGC	5 cut(s)	62, 143, 189, 224, 965
HaeIII	GGCC	4 cut(s)	173, 406, 586, 933
HapII	CCGG	5 cut(s)	65, 227, 582, 805, 1016
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	4 cut(s)	165, 201, 203, 351
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	3 cut(s)	644, 662, 971
Hin6I	GCGC	4 cut(s)	163, 199, 201, 349
HinP1I	GCGC	4 cut(s)	163, 199, 201, 349
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	4 cut(s)	82, 238, 637, 851
HpaII	CCGG	5 cut(s)	65, 227, 582, 805, 1016
HphI	GGTGA	3 cut(s)	367, 896, 934
Hpy166II	GTNNAC	3 cut(s)	127, 532, 1009
Hpy188III	TCNNGA	3 cut(s)	206, 634, 659
Hpy8I	GTNNAC	3 cut(s)	127, 532, 1009
Hpy99I	CGWCG	3 cut(s)	94, 188, 299
HpyAV	CCTTC	5 cut(s)	35, 163, 499, 985, 1029
HpyCH4V	TGCA	3 cut(s)	127, 878, 964
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 133, 142, 151, 160, 185, 610
HpyF3I	CTNAG	1 cut(s)	408
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	644, 662, 971
HspAI	GCGC	4 cut(s)	163, 199, 201, 349
KroI	GCCGGC	1 cut(s)	226
KroNI	GCCGGC	1 cut(s)	228
Kzo9I	GATC	2 cut(s)	435, 846
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	220
Lsp1109I	GCAGC	2 cut(s)	154, 976
LweI	GCATC	4 cut(s)	310, 544, 817, 865
MaeI	CTAG	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	726, 769
MalI	GATC	2 cut(s)	437, 848
MbiI	CCGCTC	1 cut(s)	891
MboI	GATC	2 cut(s)	435, 846
MhlI	GDGCHC	3 cut(s)	129, 213, 666
MluCI	AATT	7 cut(s)	329, 522, 567, 708, 720, 909, 954
MlyI	GAGTC	1 cut(s)	860
MmeI	TCCRAC	1 cut(s)	674
MnlI	CCTC	5 cut(s)	38, 41, 211, 455, 945
MreI	CGCCGGCG	1 cut(s)	226
MroNI	GCCGGC	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	509
MseI	TTAA	5 cut(s)	344, 371, 600, 719, 948
MspI	CCGG	5 cut(s)	65, 227, 582, 805, 1016
MspR9I	CCNGG	2 cut(s)	262, 583
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	3 cut(s)	183, 201, 351
MwoI	GCNNNNNNNGC	7 cut(s)	128, 133, 142, 151, 160, 185, 610
NaeI	GCCGGC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	583
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	2 cut(s)	435, 846
NgoMIV	GCCGGC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	644, 662, 971
NlaIV	GGNNCC	3 cut(s)	222, 405, 973
NmeAIII	GCCGAG	2 cut(s)	192, 217
NmuCI	GTSAC	1 cut(s)	726
PaeR7I	CTCGAG	1 cut(s)	206
PagI	TCATGA	1 cut(s)	658
PauI	GCGCGC	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 760
PdiI	GCCGGC	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	3 cut(s)	82, 238, 637
PkrI	GCNGC	5 cut(s)	63, 144, 190, 225, 966
PleI	GAGTC	1 cut(s)	859
PpsI	GAGTC	1 cut(s)	859
PpuMI	RGGWCCY	1 cut(s)	972
PshBI	ATTAAT	2 cut(s)	371, 719
PsiI	TTATAA	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	972
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	3 cut(s)	222, 405, 973
PspPI	GGNCC	5 cut(s)	404, 584, 893, 932, 972
PspPPI	RGGWCCY	1 cut(s)	972
PstI	CTGCAG	1 cut(s)	966
PteI	GCGCGC	1 cut(s)	199
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
Rsr2I	CGGWCCG	1 cut(s)	893
RsrII	CGGWCCG	1 cut(s)	893
SacI	GAGCTC	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	5 cut(s)	344, 371, 600, 719, 948
SatI	GCNGC	5 cut(s)	62, 143, 189, 224, 965
Sau3AI	GATC	2 cut(s)	435, 846
Sau96I	GGNCC	5 cut(s)	404, 584, 893, 932, 972
SchI	GAGTC	1 cut(s)	860
ScrFI	CCNGG	2 cut(s)	262, 583
SduI	GDGCHC	3 cut(s)	129, 213, 666
SfaNI	GCATC	4 cut(s)	310, 544, 817, 865
SfcI	CTRYAG	2 cut(s)	920, 962
Sfr274I	CTCGAG	1 cut(s)	206
SgrAI	CRCCGGYG	1 cut(s)	226
SinI	GGWCC	2 cut(s)	893, 972
SlaI	CTCGAG	1 cut(s)	206
SmlI	CTYRAG	2 cut(s)	137, 206
SmoI	CTYRAG	2 cut(s)	137, 206
Sse9I	AATT	7 cut(s)	329, 522, 567, 708, 720, 909, 954
SsiI	CCGC	8 cut(s)	59, 62, 122, 181, 189, 224, 891, 990
SspMI	CTAG	1 cut(s)	399
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	260, 581
StyI	CCWWGG	2 cut(s)	697, 870
TaqI	TCGA	8 cut(s)	92, 156, 207, 270, 338, 706, 849, 978
TaqII	GACCGA	1 cut(s)	910
TasI	AATT	7 cut(s)	329, 522, 567, 708, 720, 909, 954
TauI	GCSGC	3 cut(s)	64, 191, 226
TfiI	GAWTC	3 cut(s)	82, 238, 637
Tru1I	TTAA	5 cut(s)	344, 371, 600, 719, 948
Tru9I	TTAA	5 cut(s)	344, 371, 600, 719, 948
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	1 cut(s)	726
TseI	GCWGC	2 cut(s)	142, 964
Tsp45I	GTSAC	1 cut(s)	726
TspDTI	ATGAA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	438
VneI	GTGCAC	1 cut(s)	125
VpaK11BI	GGWCC	2 cut(s)	893, 972
VspI	ATTAAT	2 cut(s)	371, 719
XapI	RAATTY	1 cut(s)	329
XhoI	CTCGAG	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.