FvH4_7g18100

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002361
Physical Location & Seq
Reverse (-)
15209062 .. 15211656
2595 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18100.t1

Sequence Viewer

Length: 1059 bp
ATGGGTTTCAAGAGGAAGAAGAGCGAGAACGAAGAAGGAGACGAGCCGAAACCAGCGGCAGTGGAGACTGAGAAGAAGAGGAAGGGGATACTCCCGTCGATGATAAAGAACAAGGACAAGAGAGCCGCCGTCCACGCCAAGCTCAAGCAGGAGAAGAAGCTCGAGAAGCGCAAGAAGGTCAAGGCCCGCGACGCCGCCGAGAAGCGAGCTCTCGAGCTCGGTGAAGAGCCTCCGGCGAGGGGAGTGCCGAAGACGATTGAGAACACCAGGGAAGAGGATGAAACTGTTTGCAGGCCTGACGATGAAGAGTTGTTTGCTGGAAATGATGCGGATGAGTTTAGTGCGGTTTTGAAGCATGGATCTAATCCGAAGATACTGATCACCACTTGCCGATTTAACTCTTCTAGGGGTCCTGCTTTTATAGAGGAACTACTTTCGGTGATCCCTAATTCGACATACTATAAAAGAGGAACTTATGACTTGAAAAAGATTATAGAATATGCAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCAATCGCCGTGAACCAGATGCTCTCCTAATAATTGGCTTACCTAGTGGACCTACTGCTCATTTTAAGCTCTCAAAGCTCGTTTTACGGAAGGATATCAAGAACCATGGAAATCCAACCACTCATAAGCCTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGCCATCGTATTGGAAGATTAATACAGTCACTTTTCCCTCAAGAACCAAACTTTCGTGGTCGACGAGTTGTTACTTTCCACAACCAGCGAGATTTTGTATTCTTCCGGCATCATCGGTACATTTTTGAAACCAAAGAGGTTAAACAAGCTGAAGCAAAGGGCAAAAAGACCAAGGATTCCAAGGCTGCGACTATTACTGAAGCAAAACCGATTGCCCGCCTACAGGAATGTGGTCCTCGTTTTACCCTTAAATTGATCAGTCTGCAGCATGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGCCGGAGATGGATACTAGTAGGAGGAGGTTTTTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

353

Amino Acids

40.46

Weight (kDa)

9.84

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 133 - 321 1e-33 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 766
AccII CGCG 1 cut(s) 189
AciI CCGC 8 cut(s) 56, 126, 187, 195, 329, 344, 922, 996
AclWI GGATC 3 cut(s) 367, 436, 980
AcoI YGGCCR 1 cut(s) 706
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 2 cut(s) 876, 924
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 824
AfiI CCNNNNNNNGG 3 cut(s) 239, 928, 995
AgsI TTSAA 4 cut(s) 10, 352, 484, 833
AhlI ACTAGT 1 cut(s) 1034
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 8 cut(s) 142, 160, 209, 217, 610, 619, 676, 854
AluI AGCT 8 cut(s) 142, 160, 209, 217, 610, 619, 676, 854
Alw21I GWGCWC 2 cut(s) 211, 219
Alw26I GTCTC 2 cut(s) 33, 59
AlwI GGATC 3 cut(s) 367, 436, 980
Ama87I CYCGRG 2 cut(s) 161, 212
AoxI GGCC 3 cut(s) 183, 293, 706
ApeKI GCWGC 2 cut(s) 890, 970
ApoI RAATTY 1 cut(s) 515
AseI ATTAAT 1 cut(s) 725
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 4 cut(s) 184, 410, 590, 938
AsuHPI GGTGA 3 cut(s) 233, 373, 451
AvaI CYCGRG 2 cut(s) 161, 212
AvaII GGWCC 3 cut(s) 410, 590, 938
BaeI ACNNNNGTAYC 2 cut(s) 80, 113
BalI TGGCCA 1 cut(s) 708
BanII GRGCYC 2 cut(s) 211, 219
BbsI GAAGAC 1 cut(s) 257
Bbv12I GWGCWC 2 cut(s) 211, 219
BbvI GCAGC 2 cut(s) 877, 982
BccI CCATC 2 cut(s) 717, 1021
BceAI ACGGC 2 cut(s) 113, 534
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 1 cut(s) 268
BciVI GTATCC 2 cut(s) 81, 1024
BclI TGATCA 2 cut(s) 378, 960
BcoDI GTCTC 2 cut(s) 33, 59
BcuI ACTAGT 1 cut(s) 1034
BfaI CTAG 4 cut(s) 405, 585, 990, 1035
BfmI CTRYAG 2 cut(s) 926, 968
BfuI GTATCC 2 cut(s) 81, 1024
BisI GCNGC 5 cut(s) 57, 126, 195, 891, 971
BlsI GCNGC 5 cut(s) 58, 127, 196, 892, 972
Bme1390I CCNGG 1 cut(s) 268
Bme18I GGWCC 3 cut(s) 410, 590, 938
BmeT110I CYCGRG 2 cut(s) 161, 212
BmgT120I GGNCC 4 cut(s) 184, 410, 590, 938
BmiI GGNNCC 1 cut(s) 411
BmrFI CCNGG 1 cut(s) 268
BmsI GCATC 3 cut(s) 316, 550, 823
BpiI GAAGAC 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 672
BpuEI CTTGAG 2 cut(s) 128, 729
BsaBI GATNNNNATC 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 5 cut(s) 267, 646, 703, 876, 885
BsaXI ACNNNNNCTCC 2 cut(s) 992, 1022
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 928, 995
Bse8I GATNNNNATC 1 cut(s) 377
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 5 cut(s) 267, 646, 703, 876, 885
BseGI GGATG 2 cut(s) 283, 337
BseJI GATNNNNATC 1 cut(s) 377
BseLI CCNNNNNNNGG 3 cut(s) 239, 928, 995
BseMII CTCAG 2 cut(s) 60, 663
BseRI GAGGAG 1 cut(s) 1057
BseXI GCAGC 2 cut(s) 877, 982
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 3 cut(s) 185, 295, 708
BsiHKAI GWGCWC 2 cut(s) 211, 219
BsiHKCI CYCGRG 2 cut(s) 161, 212
BsiSI CCGG 3 cut(s) 233, 811, 1022
BslFI GGGAC 1 cut(s) 991
BslI CCNNNNNNNGG 3 cut(s) 239, 928, 995
BsmAI GTCTC 2 cut(s) 33, 59
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 991
BsnI GGCC 3 cut(s) 185, 295, 708
BsoBI CYCGRG 2 cut(s) 161, 212
Bsp1286I GDGCHC 2 cut(s) 211, 219
Bsp143I GATC 5 cut(s) 359, 378, 441, 960, 985
Bsp19I CCATGG 1 cut(s) 646
BspACI CCGC 8 cut(s) 56, 126, 187, 195, 329, 344, 922, 996
BspANI GGCC 3 cut(s) 185, 295, 708
BspCNI CTCAG 2 cut(s) 61, 664
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 411
BspMAI CTGCAG 1 cut(s) 972
BspPI GGATC 3 cut(s) 367, 436, 980
BspQI GCTCTTC 2 cut(s) 14, 219
BssECI CCNNGG 5 cut(s) 267, 646, 703, 876, 885
BssMI GATC 5 cut(s) 359, 378, 441, 960, 985
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 4 cut(s) 646, 703, 876, 885
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 2 cut(s) 286, 732
Bst6I CTCTTC 6 cut(s) 14, 71, 219, 267, 300, 406
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 4 cut(s) 187, 207, 293, 922
BstDEI CTNAG 2 cut(s) 69, 672
BstDSI CCRYGG 1 cut(s) 646
BstF5I GGATG 2 cut(s) 283, 337
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 5 cut(s) 362, 381, 444, 963, 988
BstMAI GTCTC 2 cut(s) 33, 59
BstMBI GATC 5 cut(s) 359, 378, 441, 960, 985
BstMWI GCNNNNNNNGC 4 cut(s) 134, 166, 191, 616
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 266
BstSFI CTRYAG 2 cut(s) 926, 968
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 877, 982
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 359
BstXI CCANNNNNNTGG 1 cut(s) 716
BstYI RGATCY 1 cut(s) 359
BsuI GTATCC 2 cut(s) 81, 1024
BsuRI GGCC 3 cut(s) 185, 295, 708
BtgI CCRYGG 1 cut(s) 646
BtsCI GGATG 2 cut(s) 283, 337
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 4 cut(s) 187, 207, 293, 922
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 4 cut(s) 184, 410, 590, 938
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 823
CviAII CATG 3 cut(s) 356, 647, 974
CviQI GTAC 1 cut(s) 823
DdeI CTNAG 2 cut(s) 69, 672
DpnI GATC 5 cut(s) 361, 380, 443, 962, 987
DpnII GATC 5 cut(s) 359, 378, 441, 960, 985
EaeI YGGCCR 1 cut(s) 706
Eam1104I CTCTTC 6 cut(s) 14, 71, 219, 267, 300, 406
EarI CTCTTC 6 cut(s) 14, 71, 219, 267, 300, 406
Ecl136II GAGCTC 2 cut(s) 209, 217
Eco130I CCWWGG 4 cut(s) 646, 703, 876, 885
Eco147I AGGCCT 1 cut(s) 295
Eco24I GRGCYC 2 cut(s) 211, 219
Eco32I GATATC 1 cut(s) 637
Eco47I GGWCC 3 cut(s) 410, 590, 938
Eco53kI GAGCTC 2 cut(s) 209, 217
Eco57I CTGAAG 2 cut(s) 876, 924
Eco88I CYCGRG 2 cut(s) 161, 212
EcoICRI GAGCTC 2 cut(s) 209, 217
EcoO109I RGGNCCY 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 266
EcoRV GATATC 1 cut(s) 637
EcoT14I CCWWGG 4 cut(s) 646, 703, 876, 885
EcoT38I GRGCYC 2 cut(s) 211, 219
ErhI CCWWGG 4 cut(s) 646, 703, 876, 885
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 3 cut(s) 359, 650, 977
FalI AAGNNNNNCTT 2 cut(s) 457, 489
FaqI GGGAC 1 cut(s) 991
FatI CATG 3 cut(s) 355, 646, 973
FauI CCCGC 3 cut(s) 194, 929, 989
FbaI TGATCA 2 cut(s) 378, 960
FblI GTMKAC 1 cut(s) 766
Fnu4HI GCNGC 5 cut(s) 57, 126, 195, 891, 971
FokI GGATG 2 cut(s) 290, 344
FriOI GRGCYC 2 cut(s) 211, 219
Fsp4HI GCNGC 5 cut(s) 57, 126, 195, 891, 971
FspBI CTAG 4 cut(s) 405, 585, 990, 1035
GlaI GCGC 1 cut(s) 170
GluI GCNGC 5 cut(s) 57, 126, 195, 891, 971
HaeIII GGCC 3 cut(s) 185, 295, 708
HapII CCGG 3 cut(s) 233, 811, 1022
HgaI GACGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 171
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 3 cut(s) 359, 650, 977
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 1 cut(s) 767
HindII GTYRAC 1 cut(s) 767
HinfI GANTC 1 cut(s) 881
HpaII CCGG 3 cut(s) 233, 811, 1022
HphI GGTGA 3 cut(s) 233, 373, 451
Hpy166II GTNNAC 5 cut(s) 133, 554, 590, 767, 1015
Hpy188I TCNGA 1 cut(s) 369
Hpy188III TCNNGA 5 cut(s) 10, 163, 212, 640, 746
Hpy8I GTNNAC 5 cut(s) 133, 554, 590, 767, 1015
Hpy99I CGWCG 3 cut(s) 100, 194, 771
HpyAV CCTTC 4 cut(s) 29, 76, 169, 625
HpyCH4III ACNGT 2 cut(s) 286, 732
HpyCH4V TGCA 3 cut(s) 291, 503, 970
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 166, 191, 616
HpyF3I CTNAG 2 cut(s) 69, 672
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 3 cut(s) 359, 650, 977
HspAI GCGC 1 cut(s) 169
Ksp22I TGATCA 2 cut(s) 378, 960
Kzo9I GATC 5 cut(s) 359, 378, 441, 960, 985
LguI GCTCTTC 2 cut(s) 14, 219
Lsp1109I GCAGC 2 cut(s) 877, 982
LweI GCATC 3 cut(s) 316, 550, 823
MaeI CTAG 4 cut(s) 405, 585, 990, 1035
MaeIII GTNAC 2 cut(s) 732, 775
MalI GATC 5 cut(s) 361, 380, 443, 962, 987
MboI GATC 5 cut(s) 359, 378, 441, 960, 985
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 2 cut(s) 211, 219
MlsI TGGCCA 1 cut(s) 708
MluCI AATT 5 cut(s) 448, 515, 528, 573, 956
MluNI TGGCCA 1 cut(s) 708
MmeI TCCRAC 1 cut(s) 680
Mox20I TGGCCA 1 cut(s) 708
MscI TGGCCA 1 cut(s) 708
MseI TTAA 7 cut(s) 396, 527, 606, 683, 725, 846, 954
Msp20I TGGCCA 1 cut(s) 708
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 3 cut(s) 233, 811, 1022
MspR9I CCNGG 1 cut(s) 268
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 4 cut(s) 134, 166, 191, 616
NcoI CCATGG 1 cut(s) 646
NdeII GATC 5 cut(s) 359, 378, 441, 960, 985
NlaIII CATG 3 cut(s) 359, 650, 977
NlaIV GGNNCC 1 cut(s) 411
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 732
PaeR7I CTCGAG 2 cut(s) 161, 212
PceI AGGCCT 1 cut(s) 295
PciSI GCTCTTC 2 cut(s) 14, 219
PcsI WCGNNNNNNNCGW 1 cut(s) 766
PfeI GAWTC 1 cut(s) 881
PkrI GCNGC 5 cut(s) 58, 127, 196, 892, 972
PpuMI RGGWCCY 1 cut(s) 410
PshBI ATTAAT 1 cut(s) 725
Psp124BI GAGCTC 2 cut(s) 211, 219
Psp5II RGGWCCY 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 411
PspPI GGNCC 4 cut(s) 184, 410, 590, 938
PspPPI RGGWCCY 1 cut(s) 410
PstI CTGCAG 1 cut(s) 972
PsuI RGATCY 1 cut(s) 359
RsaI GTAC 1 cut(s) 824
RsaNI GTAC 1 cut(s) 823
SacI GAGCTC 2 cut(s) 211, 219
SalI GTCGAC 1 cut(s) 765
SapI GCTCTTC 2 cut(s) 14, 219
SaqAI TTAA 7 cut(s) 396, 527, 606, 683, 725, 846, 954
SatI GCNGC 5 cut(s) 57, 126, 195, 891, 971
Sau3AI GATC 5 cut(s) 359, 378, 441, 960, 985
Sau96I GGNCC 4 cut(s) 184, 410, 590, 938
ScrFI CCNGG 1 cut(s) 268
SduI GDGCHC 2 cut(s) 211, 219
SfaNI GCATC 3 cut(s) 316, 550, 823
SfcI CTRYAG 2 cut(s) 926, 968
Sfr274I CTCGAG 2 cut(s) 161, 212
SinI GGWCC 3 cut(s) 410, 590, 938
SlaI CTCGAG 2 cut(s) 161, 212
SmlI CTYRAG 4 cut(s) 143, 161, 212, 744
SmoI CTYRAG 4 cut(s) 143, 161, 212, 744
SpeI ACTAGT 1 cut(s) 1034
Sse9I AATT 5 cut(s) 448, 515, 528, 573, 956
SseBI AGGCCT 1 cut(s) 295
SsiI CCGC 8 cut(s) 56, 126, 187, 195, 329, 344, 922, 996
SspMI CTAG 4 cut(s) 405, 585, 990, 1035
SstI GAGCTC 2 cut(s) 211, 219
StuI AGGCCT 1 cut(s) 295
StyD4I CCNGG 1 cut(s) 266
StyI CCWWGG 4 cut(s) 646, 703, 876, 885
TaaI ACNGT 2 cut(s) 286, 732
TaqI TCGA 5 cut(s) 98, 162, 213, 452, 766
TasI AATT 5 cut(s) 448, 515, 528, 573, 956
TauI GCSGC 3 cut(s) 59, 128, 197
TfiI GAWTC 1 cut(s) 881
Tru1I TTAA 7 cut(s) 396, 527, 606, 683, 725, 846, 954
Tru9I TTAA 7 cut(s) 396, 527, 606, 683, 725, 846, 954
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 732
TseI GCWGC 2 cut(s) 890, 970
Tsp45I GTSAC 1 cut(s) 732
TspDTI ATGAA 3 cut(s) 294, 318, 527
TspGWI ACGGA 1 cut(s) 643
TspRI CASTG 1 cut(s) 66
VpaK11BI GGWCC 3 cut(s) 410, 590, 938
VspI ATTAAT 1 cut(s) 725
XapI RAATTY 1 cut(s) 515
XhoI CTCGAG 2 cut(s) 161, 212
XmiI GTMKAC 1 cut(s) 766
XspI CTAG 4 cut(s) 405, 585, 990, 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.