RchiOBHm_Chr3g0479951

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002361
Physical Location & Seq
Forward (+)
25766255 .. 25768008
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44499

Sequence Viewer

Length: 795 bp
ATGTGTGCTAAGGTTTATGCTTTTTGTTGTTTTGGTGGTTTTCAGAGGGGTCCTGCTTTTATTGAGGAACTACTTTCGGTGATCCCAAATGCGCAGTACTATAAAAGAGACACTTATGACTTGAAAAAGATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTGATTGTTGTTCATACCAATCACCGGGAACCAGATGCTCTCCTAATTATTGGCTTACCTAATGGACCTACTGCCCATTTTAAGCTCTCAAAGCTTGTTTTACGGAAGGATATCAAGAATCATGGAAATCCAACCAGTCATGAGCTTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCGTATTGGGAGGTTGCAATCCTTAACTTGTTTGACATGTTCTCACATTATATTAGATGCATTTTGGACTTTTTGGTTCAAATACACCTCATCACACAATGTGTCACTTTTCCCTCAAGAACCAAATTTTAGTGGTCGGCGAGTTGTAACTTTCCACAACCAGCGAGATTTTATATTCTTCCGGCATCATCGGTACATTTTTGAAACCAAAGAGACTAAACAGGCTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAGCTGACGCTATTACTAAAGCAAAACCATTTGCGCGCCTACAGTGTGGTCCTCGTTTTACCCTTAAATTGATCAGTCTGCAGCACGGGACATTTGATCCTAGAGGTGGGGAGTTTGAGTGGGTTCACAAGGTAATCCACTTATCAGTCAATTCATTTCAGTATATTGGTTTCATATCTTTATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

264

Amino Acids

30.55

Weight (kDa)

9.64

Isoelectric Point (pI)

29.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 19 - 227 1.3e-24 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 93
AccII CGCG 1 cut(s) 643
AclWI GGATC 2 cut(s) 76, 698
AcsI RAATTY 2 cut(s) 155, 475
AcuI CTGAAG 1 cut(s) 597
AdeI CACNNNGTG 1 cut(s) 451
AfaI GTAC 2 cut(s) 98, 545
AfiI CCNNNNNNNGG 2 cut(s) 189, 713
AflIII ACRYGT 1 cut(s) 386
AgsI TTSAA 3 cut(s) 124, 430, 554
AluBI AGCT 5 cut(s) 250, 259, 310, 316, 611
AluI AGCT 5 cut(s) 250, 259, 310, 316, 611
Alw26I GTCTC 2 cut(s) 102, 557
AlwI GGATC 2 cut(s) 76, 698
ApeKI GCWGC 1 cut(s) 688
ApoI RAATTY 2 cut(s) 155, 475
AspLEI GCGC 3 cut(s) 94, 643, 645
AspS9I GGNCC 3 cut(s) 50, 230, 656
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 91, 179
AvaII GGWCC 3 cut(s) 50, 230, 656
BbvI GCAGC 1 cut(s) 700
BclI TGATCA 1 cut(s) 678
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 2 cut(s) 102, 557
BfaI CTAG 1 cut(s) 708
BfmI CTRYAG 2 cut(s) 647, 686
BisI GCNGC 1 cut(s) 689
BlsI GCNGC 1 cut(s) 690
BmcAI AGTACT 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 3 cut(s) 50, 230, 656
BmgT120I GGNCC 3 cut(s) 50, 230, 656
BmiI GGNNCC 2 cut(s) 51, 195
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 3 cut(s) 190, 397, 544
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 2 cut(s) 332, 450
BpuMI CCSGG 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 343, 597
BsaXI ACNNNNNCTCC 2 cut(s) 710, 740
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 713
Bse1I ACTGG 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 343, 597
BseLI CCNNNNNNNGG 2 cut(s) 189, 713
BseNI ACTGG 1 cut(s) 300
BsePI GCGCGC 1 cut(s) 641
BseXI GCAGC 1 cut(s) 700
Bsh1236I CGCG 1 cut(s) 643
BsiSI CCGG 2 cut(s) 190, 532
BslFI GGGAC 1 cut(s) 709
BslI CCNNNNNNNGG 2 cut(s) 189, 713
BsmAI GTCTC 2 cut(s) 102, 557
BsmFI GGGAC 1 cut(s) 709
Bsp143I GATC 3 cut(s) 81, 678, 703
BspFNI CGCG 1 cut(s) 643
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 51, 195
BspMAI CTGCAG 1 cut(s) 690
BspPI GGATC 2 cut(s) 76, 698
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 2 cut(s) 343, 597
BssHII GCGCGC 1 cut(s) 641
BssMI GATC 3 cut(s) 81, 678, 703
BssT1I CCWWGG 2 cut(s) 343, 597
Bst4CI ACNGT 1 cut(s) 651
BstC8I GCNNGC 1 cut(s) 643
BstDEI CTNAG 1 cut(s) 9
BstFNI CGCG 1 cut(s) 643
BstHHI GCGC 3 cut(s) 94, 643, 645
BstKTI GATC 3 cut(s) 84, 681, 706
BstMAI GTCTC 2 cut(s) 102, 557
BstMBI GATC 3 cut(s) 81, 678, 703
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 2 cut(s) 647, 686
BstUI CGCG 1 cut(s) 643
BstV1I GCAGC 1 cut(s) 700
BtsIMutI CAGTG 1 cut(s) 656
Cac8I GCNNGC 1 cut(s) 643
CciI TCATGA 1 cut(s) 304
CfoI GCGC 3 cut(s) 94, 643, 645
Cfr13I GGNCC 3 cut(s) 50, 230, 656
CseI GACGC 1 cut(s) 623
Csp6I GTAC 2 cut(s) 97, 544
CviAII CATG 3 cut(s) 287, 305, 387
CviJI RGCY 7 cut(s) 219, 250, 259, 310, 316, 575, 611
CviKI_1 RGCY 7 cut(s) 219, 250, 259, 310, 316, 575, 611
CviQI GTAC 2 cut(s) 97, 544
DdeI CTNAG 1 cut(s) 9
DpnI GATC 3 cut(s) 83, 680, 705
DpnII GATC 3 cut(s) 81, 678, 703
DraIII CACNNNGTG 1 cut(s) 451
Eco130I CCWWGG 2 cut(s) 343, 597
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 3 cut(s) 50, 230, 656
Eco57I CTGAAG 1 cut(s) 597
EcoO109I RGGNCCY 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 155
EcoRV GATATC 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 343, 597
EcoT22I ATGCAT 1 cut(s) 412
ErhI CCWWGG 2 cut(s) 343, 597
FaeI CATG 3 cut(s) 290, 308, 390
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FaqI GGGAC 1 cut(s) 709
FatI CATG 3 cut(s) 286, 304, 386
FbaI TGATCA 1 cut(s) 678
Fnu4HI GCNGC 1 cut(s) 689
Fsp4HI GCNGC 1 cut(s) 689
FspBI CTAG 1 cut(s) 708
FspI TGCGCA 1 cut(s) 93
GlaI GCGC 3 cut(s) 93, 642, 644
GluI GCNGC 1 cut(s) 689
HapII CCGG 2 cut(s) 190, 532
HgaI GACGC 1 cut(s) 623
HhaI GCGC 3 cut(s) 94, 643, 645
Hin1II CATG 3 cut(s) 290, 308, 390
Hin6I GCGC 3 cut(s) 92, 641, 643
HinP1I GCGC 3 cut(s) 92, 641, 643
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 2 cut(s) 283, 602
HpaII CCGG 2 cut(s) 190, 532
HphI GGTGA 2 cut(s) 91, 179
Hpy166II GTNNAC 1 cut(s) 733
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 3 cut(s) 280, 305, 467
Hpy8I GTNNAC 1 cut(s) 733
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 1 cut(s) 651
HpyCH4V TGCA 4 cut(s) 143, 367, 410, 688
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 3 cut(s) 290, 308, 390
HspAI GCGC 3 cut(s) 92, 641, 643
Ksp22I TGATCA 1 cut(s) 678
Kzo9I GATC 3 cut(s) 81, 678, 703
LpnPI CCDG 7 cut(s) 66, 203, 210, 313, 524, 545, 557
Lsp1109I GCAGC 1 cut(s) 700
LweI GCATC 3 cut(s) 190, 397, 544
MaeI CTAG 1 cut(s) 708
MaeIII GTNAC 2 cut(s) 453, 496
MalI GATC 3 cut(s) 83, 680, 705
MboI GATC 3 cut(s) 81, 678, 703
MboII GAAGA 1 cut(s) 520
MluCI AATT 5 cut(s) 155, 210, 475, 674, 757
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 7 cut(s) 39, 58, 354, 448, 474, 669, 704
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 4 cut(s) 246, 323, 374, 672
MspI CCGG 2 cut(s) 190, 532
MspR9I CCNGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 643
MwoI GCNNNNNNNGC 1 cut(s) 256
NciI CCSGG 1 cut(s) 191
NdeII GATC 3 cut(s) 81, 678, 703
NlaIII CATG 3 cut(s) 290, 308, 390
NlaIV GGNNCC 2 cut(s) 51, 195
NmuCI GTSAC 1 cut(s) 453
NsbI TGCGCA 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 412
NspI RCATGY 1 cut(s) 390
PagI TCATGA 1 cut(s) 304
PauI GCGCGC 1 cut(s) 641
PciI ACATGT 1 cut(s) 386
PfeI GAWTC 2 cut(s) 283, 602
PkrI GCNGC 1 cut(s) 690
PpuMI RGGWCCY 1 cut(s) 50
PscI ACATGT 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 50
PspN4I GGNNCC 2 cut(s) 51, 195
PspPI GGNCC 3 cut(s) 50, 230, 656
PspPPI RGGWCCY 1 cut(s) 50
PstI CTGCAG 1 cut(s) 690
PteI GCGCGC 1 cut(s) 641
RsaI GTAC 2 cut(s) 98, 545
RsaNI GTAC 2 cut(s) 97, 544
SaqAI TTAA 4 cut(s) 246, 323, 374, 672
SatI GCNGC 1 cut(s) 689
Sau3AI GATC 3 cut(s) 81, 678, 703
Sau96I GGNCC 3 cut(s) 50, 230, 656
ScaI AGTACT 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 191
SfaNI GCATC 3 cut(s) 190, 397, 544
SfcI CTRYAG 2 cut(s) 647, 686
SinI GGWCC 3 cut(s) 50, 230, 656
SmlI CTYRAG 2 cut(s) 311, 465
SmoI CTYRAG 2 cut(s) 311, 465
Sse9I AATT 5 cut(s) 155, 210, 475, 674, 757
SspMI CTAG 1 cut(s) 708
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 2 cut(s) 343, 597
TaaI ACNGT 1 cut(s) 651
TasI AATT 5 cut(s) 155, 210, 475, 674, 757
TatI WGTACW 1 cut(s) 96
TfiI GAWTC 2 cut(s) 283, 602
Tru1I TTAA 4 cut(s) 246, 323, 374, 672
Tru9I TTAA 4 cut(s) 246, 323, 374, 672
TscAI CASTG 1 cut(s) 656
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 1 cut(s) 688
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 3 cut(s) 167, 750, 769
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 1 cut(s) 656
VpaK11BI GGWCC 3 cut(s) 50, 230, 656
XapI RAATTY 2 cut(s) 155, 475
XceI RCATGY 1 cut(s) 390
XspI CTAG 1 cut(s) 708
ZrmI AGTACT 1 cut(s) 98
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.