Rh5DG368200

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002361
Physical Location & Seq
Reverse (-)
55003385 .. 55012040
8656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG368200.1

Sequence Viewer

Length: 819 bp
ATGGGAGTCAAGGACAAGAAGAAGAACAAGGAGCTTGCCCAGAGAAATTTAGAGCCTGTTGAAAAGGATAAAAGTTCAGGACCTTCAGAGATGAGAAAGAGAAAAAGAGAGAAGAAAACAATGGTGATTCGAGAAAAGTTGTTCAGATCTCTATTGAAGAGGGGTCCTGCTTTTATAGAGGAACTAGTTTTGGTGATCCCAAATGCGCAGTACTATAAAAGAGGCACTTATGACTTGAAAAAGATTATAGAGTATGCAAATAAAATGGAATTCACTTCTTTAATTGTTGTTCATACCAATCGCTGGGAACCAGATGCTCTCCTAATTATTGGCTTACCTAATGGACCTACTACCCATTTTAAGCTCTCAAAGCTTGTTTTACGGAAGGATATCAAGAATCATGGAAATCCAACCAGTCATGAGCCTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCGTAGTGGGAGGTACATTTTTGAAACCAAAGAGACTAAACAGGCTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAGCTGACGCTATTACTGAAGCAAAACCATTTTCGCGCCTACAGGAATGTGGTCCTCGTTTTACCCTTAAATTGACCAGTCTGCAGCACGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGAAAAATTTCAATGGTTCCCATCACCCAATTATTGGCTTTCCGTTTGGTCCTCGGCCAGTCAACTTAGGTGGTCATGGCCCTCATGGCATGCCATCGCCAGGTCAAGCAGTTCTCTTTGCATTTGTTATTGGTACTCGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

272

Amino Acids

30.88

Weight (kDa)

10.06

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 57 - 149 3.1e-13 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 207
AccB7I CCANNNNNTGG 2 cut(s) 303, 707
AccII CGCG 1 cut(s) 577
AciI CCGC 1 cut(s) 651
AclWI GGATC 2 cut(s) 190, 635
AcoI YGGCCR 1 cut(s) 728
AcsI RAATTY 3 cut(s) 46, 269, 679
AcuI CTGAAG 3 cut(s) 69, 531, 579
AfaI GTAC 3 cut(s) 212, 479, 808
AfiI CCNNNNNNNGG 4 cut(s) 303, 650, 707, 773
AgsI TTSAA 5 cut(s) 62, 157, 238, 488, 685
AhlI ACTAGT 1 cut(s) 184
AjnI CCWGG 1 cut(s) 772
AluBI AGCT 5 cut(s) 34, 364, 373, 430, 545
AluI AGCT 5 cut(s) 34, 364, 373, 430, 545
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 2 cut(s) 190, 635
AoxI GGCC 2 cut(s) 728, 751
ApeKI GCWGC 1 cut(s) 625
ApoI RAATTY 3 cut(s) 46, 269, 679
Asp700I GAANNNNTTC 1 cut(s) 680
AspLEI GCGC 2 cut(s) 208, 579
AspS9I GGNCC 6 cut(s) 80, 164, 344, 593, 722, 752
AsuHPI GGTGA 3 cut(s) 136, 205, 689
AvaII GGWCC 5 cut(s) 80, 164, 344, 593, 722
BauI CACGAG 1 cut(s) 810
BbvI GCAGC 1 cut(s) 637
BccI CCATC 2 cut(s) 702, 775
BciT130I CCWGG 1 cut(s) 774
BcoDI GTCTC 1 cut(s) 491
BcuI ACTAGT 1 cut(s) 184
BfaI CTAG 2 cut(s) 185, 645
BfmI CTRYAG 2 cut(s) 581, 623
BglI GCCNNNNNGGC 1 cut(s) 759
BglII AGATCT 1 cut(s) 146
BisI GCNGC 1 cut(s) 626
BlsI GCNGC 1 cut(s) 627
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 774
Bme18I GGWCC 5 cut(s) 80, 164, 344, 593, 722
BmgT120I GGNCC 6 cut(s) 80, 164, 344, 593, 722, 752
BmiI GGNNCC 3 cut(s) 165, 309, 691
BmrFI CCNGG 1 cut(s) 774
BmsI GCATC 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 426
BsaJI CCNNGG 3 cut(s) 457, 531, 725
BsaXI ACNNNNNCTCC 2 cut(s) 647, 677
Bsc4I CCNNNNNNNGG 4 cut(s) 303, 650, 707, 773
Bse1I ACTGG 3 cut(s) 414, 618, 731
BseBI CCWGG 1 cut(s) 774
BseDI CCNNGG 3 cut(s) 457, 531, 725
BseLI CCNNNNNNNGG 4 cut(s) 303, 650, 707, 773
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 3 cut(s) 414, 618, 731
BseXI GCAGC 1 cut(s) 637
BseYI CCCAGC 1 cut(s) 303
Bsh1236I CGCG 1 cut(s) 577
BshFI GGCC 2 cut(s) 730, 753
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 4 cut(s) 303, 650, 707, 773
BsmAI GTCTC 1 cut(s) 491
BsmFI GGGAC 1 cut(s) 646
BsnI GGCC 2 cut(s) 730, 753
Bsp143I GATC 3 cut(s) 146, 195, 640
BspACI CCGC 1 cut(s) 651
BspANI GGCC 2 cut(s) 730, 753
BspCNI CTCAG 1 cut(s) 418
BspFNI CGCG 1 cut(s) 577
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 3 cut(s) 165, 309, 691
BspMAI CTGCAG 1 cut(s) 627
BspPI GGATC 2 cut(s) 190, 635
BsrI ACTGG 3 cut(s) 414, 618, 731
BssECI CCNNGG 3 cut(s) 457, 531, 725
BssMI GATC 3 cut(s) 146, 195, 640
BssSI CACGAG 1 cut(s) 810
BssT1I CCWWGG 2 cut(s) 457, 531
Bst2BI CACGAG 1 cut(s) 810
Bst2UI CCWGG 1 cut(s) 774
Bst6I CTCTTC 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 36, 764
BstDEI CTNAG 2 cut(s) 426, 739
BstFNI CGCG 1 cut(s) 577
BstHHI GCGC 2 cut(s) 208, 579
BstKTI GATC 3 cut(s) 149, 198, 643
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 3 cut(s) 146, 195, 640
BstMWI GCNNNNNNNGC 2 cut(s) 370, 759
BstNI CCWGG 1 cut(s) 774
BstNSI RCATGY 1 cut(s) 766
BstSCI CCNGG 1 cut(s) 772
BstSFI CTRYAG 2 cut(s) 581, 623
BstUI CGCG 1 cut(s) 577
BstV1I GCAGC 1 cut(s) 637
BstX2I RGATCY 1 cut(s) 146
BstYI RGATCY 1 cut(s) 146
BsuRI GGCC 2 cut(s) 730, 753
BtgZI GCGATG 1 cut(s) 753
Cac8I GCNNGC 2 cut(s) 36, 764
CciI TCATGA 1 cut(s) 418
CfoI GCGC 2 cut(s) 208, 579
Cfr13I GGNCC 6 cut(s) 80, 164, 344, 593, 722, 752
CseI GACGC 1 cut(s) 557
Csp6I GTAC 3 cut(s) 211, 478, 807
CspCI CAANNNNNGTGG 2 cut(s) 724, 759
CviAII CATG 5 cut(s) 401, 419, 749, 758, 763
CviQI GTAC 3 cut(s) 211, 478, 807
DdeI CTNAG 2 cut(s) 426, 739
DpnI GATC 3 cut(s) 148, 197, 642
DpnII GATC 3 cut(s) 146, 195, 640
EaeI YGGCCR 1 cut(s) 728
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 2 cut(s) 457, 531
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 5 cut(s) 80, 164, 344, 593, 722
Eco57I CTGAAG 3 cut(s) 69, 531, 579
EcoO109I RGGNCCY 2 cut(s) 80, 164
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 772
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 2 cut(s) 457, 531
ErhI CCWWGG 2 cut(s) 457, 531
FaeI CATG 5 cut(s) 404, 422, 752, 761, 766
FalI AAGNNNNNCTT 2 cut(s) 211, 243
FaqI GGGAC 1 cut(s) 646
FatI CATG 5 cut(s) 400, 418, 748, 757, 762
FauI CCCGC 1 cut(s) 644
Fnu4HI GCNGC 1 cut(s) 626
Fsp4HI GCNGC 1 cut(s) 626
FspBI CTAG 2 cut(s) 185, 645
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 2 cut(s) 207, 578
GluI GCNGC 1 cut(s) 626
GsaI CCCAGC 1 cut(s) 307
HaeIII GGCC 2 cut(s) 730, 753
HgaI GACGC 1 cut(s) 557
HhaI GCGC 2 cut(s) 208, 579
Hin1II CATG 5 cut(s) 404, 422, 752, 761, 766
Hin6I GCGC 2 cut(s) 206, 577
HinP1I GCGC 2 cut(s) 206, 577
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 4 cut(s) 6, 127, 397, 536
HphI GGTGA 3 cut(s) 136, 205, 689
Hpy166II GTNNAC 2 cut(s) 670, 736
Hpy188I TCNGA 2 cut(s) 88, 146
Hpy188III TCNNGA 4 cut(s) 78, 131, 394, 419
Hpy8I GTNNAC 2 cut(s) 670, 736
HpyAV CCTTC 2 cut(s) 93, 379
HpyCH4V TGCA 3 cut(s) 257, 625, 794
HpyF10VI GCNNNNNNNGC 2 cut(s) 370, 759
HpyF3I CTNAG 2 cut(s) 426, 739
Hsp92II CATG 5 cut(s) 404, 422, 752, 761, 766
HspAI GCGC 2 cut(s) 206, 577
Kzo9I GATC 3 cut(s) 146, 195, 640
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 1 cut(s) 637
LweI GCATC 1 cut(s) 304
MaeI CTAG 2 cut(s) 185, 645
MalI GATC 3 cut(s) 148, 197, 642
MboI GATC 3 cut(s) 146, 195, 640
MboII GAAGA 4 cut(s) 31, 34, 124, 169
MflI RGATCY 1 cut(s) 146
MluCI AATT 7 cut(s) 46, 269, 282, 324, 611, 679, 702
MlyI GAGTC 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 8 cut(s) 153, 172, 215, 468, 606, 641, 735, 765
MroXI GAANNNNTTC 1 cut(s) 680
MseI TTAA 4 cut(s) 281, 360, 437, 609
MslI CAYNNNNRTG 1 cut(s) 468
MspR9I CCNGG 1 cut(s) 774
MvaI CCWGG 1 cut(s) 774
MvnI CGCG 1 cut(s) 577
MwoI GCNNNNNNNGC 2 cut(s) 370, 759
NdeII GATC 3 cut(s) 146, 195, 640
NlaIII CATG 5 cut(s) 404, 422, 752, 761, 766
NlaIV GGNNCC 3 cut(s) 165, 309, 691
NmeAIII GCCGAG 1 cut(s) 706
NsbI TGCGCA 1 cut(s) 207
NspI RCATGY 1 cut(s) 766
PaeI GCATGC 1 cut(s) 766
PagI TCATGA 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 680
PfeI GAWTC 3 cut(s) 127, 397, 536
PflMI CCANNNNNTGG 2 cut(s) 303, 707
PkrI GCNGC 1 cut(s) 627
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PpuMI RGGWCCY 2 cut(s) 80, 164
Psp5II RGGWCCY 2 cut(s) 80, 164
Psp6I CCWGG 1 cut(s) 772
PspFI CCCAGC 1 cut(s) 303
PspGI CCWGG 1 cut(s) 772
PspN4I GGNNCC 3 cut(s) 165, 309, 691
PspPI GGNCC 6 cut(s) 80, 164, 344, 593, 722, 752
PspPPI RGGWCCY 2 cut(s) 80, 164
PstI CTGCAG 1 cut(s) 627
PsuI RGATCY 1 cut(s) 146
RsaI GTAC 3 cut(s) 212, 479, 808
RsaNI GTAC 3 cut(s) 211, 478, 807
RseI CAYNNNNRTG 1 cut(s) 468
SaqAI TTAA 4 cut(s) 281, 360, 437, 609
SatI GCNGC 1 cut(s) 626
Sau3AI GATC 3 cut(s) 146, 195, 640
Sau96I GGNCC 6 cut(s) 80, 164, 344, 593, 722, 752
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 774
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 2 cut(s) 581, 623
SinI GGWCC 5 cut(s) 80, 164, 344, 593, 722
SmiMI CAYNNNNRTG 1 cut(s) 468
SpeI ACTAGT 1 cut(s) 184
SphI GCATGC 1 cut(s) 766
Sse9I AATT 7 cut(s) 46, 269, 282, 324, 611, 679, 702
SsiI CCGC 1 cut(s) 651
SspMI CTAG 2 cut(s) 185, 645
StyD4I CCNGG 1 cut(s) 772
StyI CCWWGG 2 cut(s) 457, 531
TaqI TCGA 1 cut(s) 130
TasI AATT 7 cut(s) 46, 269, 282, 324, 611, 679, 702
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 3 cut(s) 127, 397, 536
Tru1I TTAA 4 cut(s) 281, 360, 437, 609
Tru9I TTAA 4 cut(s) 281, 360, 437, 609
TseI GCWGC 1 cut(s) 625
TspDTI ATGAA 1 cut(s) 281
TspGWI ACGGA 2 cut(s) 397, 705
Van91I CCANNNNNTGG 2 cut(s) 303, 707
VpaK11BI GGWCC 5 cut(s) 80, 164, 344, 593, 722
XapI RAATTY 3 cut(s) 46, 269, 679
XceI RCATGY 1 cut(s) 766
XmnI GAANNNNTTC 1 cut(s) 680
XspI CTAG 2 cut(s) 185, 645
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.