Rh5DG309100

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002361
Physical Location & Seq
Forward (+)
39476676 .. 39495163
18488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG309100.1

Sequence Viewer

Length: 882 bp
ATGAAGAGGGAAGTACTAATTGGGAAGAAGGATGAGATATATGGTGGCAGGTTATTAGCGAGTTTGCAGTTGTTTGTTATAAATGATGCGGATGAGTTTAGTGCGGTTTTGAAGCGTGAATCGAATCCGAAGATATTGATCACCACTTGCCGATTTAACTCTTCTAGGGGTCCTGCTTTTATAGAGGAACTACTTTCGATGATCCCAAATGCGCAGTACTATAAAAGAGACACTTATGACTTGAAAAAGATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCAATCACCGGGAACCAGATGCTCTCCTAATTATTGGCTTACCTAATGGACCTACTGCCCATTTTAAGCTCTCAAAGCTTGTTTTACGGAAGGATATCAAGAATCATGGAAATCCAACCAGTCATGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCATATTGGGAGGTACATTTTTGAAACCAAAAAGACTAAACAGGCTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAGCTGACGCTATTACTGAAGCAAAACCATTTGCGCGCCTACAGGAATGTGGTCCTCGTTTTACCCTTAAATTGATCAGTCTGCAGCACGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGTTGTGCATAAGTGTGGAGGCTACTACTATGGGAGAAGAGGTAAGGTACTACTATGGGGGAAGAGGCAAGGCAAGCCTTATGAATTGGGAGAAGAGAATGCAGTGGAGGATTTTAATGGAGGAAGCTGAGAATATGCAGAAGGACAGCATGTGGACATCAGTGAACAACCAAAGGAATAAGCTTTTCCAGAGATGGATGTGCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

293

Amino Acids

33.96

Weight (kDa)

9.49

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 53 - 149 9.1e-13 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
Acc16I TGCGCA 1 cut(s) 213
Acc36I ACCTGC 1 cut(s) 39
AccII CGCG 1 cut(s) 577
AciI CCGC 3 cut(s) 89, 104, 651
AclWI GGATC 2 cut(s) 196, 635
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 2 cut(s) 531, 579
AfaI GTAC 4 cut(s) 15, 218, 479, 722
AfiI CCNNNNNNNGG 2 cut(s) 309, 650
AgsI TTSAA 3 cut(s) 112, 244, 488
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 6 cut(s) 370, 379, 430, 545, 800, 856
AluI AGCT 6 cut(s) 370, 379, 430, 545, 800, 856
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 2 cut(s) 196, 635
ApeKI GCWGC 1 cut(s) 625
ApoI RAATTY 1 cut(s) 275
AspLEI GCGC 3 cut(s) 214, 577, 579
AspS9I GGNCC 3 cut(s) 170, 350, 593
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 133, 299
AvaII GGWCC 3 cut(s) 170, 350, 593
BbvI GCAGC 1 cut(s) 637
BccI CCATC 1 cut(s) 861
BclI TGATCA 2 cut(s) 138, 615
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 2 cut(s) 165, 645
BfmI CTRYAG 2 cut(s) 581, 623
BfuAI ACCTGC 1 cut(s) 39
BisI GCNGC 1 cut(s) 626
BlsI GCNGC 1 cut(s) 627
BmcAI AGTACT 2 cut(s) 15, 218
Bme1390I CCNGG 1 cut(s) 311
Bme18I GGWCC 3 cut(s) 170, 350, 593
BmgT120I GGNCC 3 cut(s) 170, 350, 593
BmiI GGNNCC 2 cut(s) 171, 315
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 2 cut(s) 76, 310
BpuMI CCSGG 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 457, 531
BsaXI ACNNNNNCTCC 4 cut(s) 647, 677, 699, 729
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 650
Bse1I ACTGG 1 cut(s) 420
Bse8I GATNNNNATC 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 457, 531
BseGI GGATG 3 cut(s) 37, 97, 876
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 2 cut(s) 309, 650
BseMII CTCAG 1 cut(s) 792
BseNI ACTGG 1 cut(s) 420
BsePI GCGCGC 1 cut(s) 575
BseXI GCAGC 1 cut(s) 637
Bsh1236I CGCG 1 cut(s) 577
BsiSI CCGG 1 cut(s) 310
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 2 cut(s) 309, 650
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 646
BsmI GAATGC 1 cut(s) 777
Bsp143I GATC 4 cut(s) 138, 201, 615, 640
BspACI CCGC 3 cut(s) 89, 104, 651
BspCNI CTCAG 1 cut(s) 793
BspFNI CGCG 1 cut(s) 577
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 171, 315
BspMAI CTGCAG 1 cut(s) 627
BspMI ACCTGC 1 cut(s) 39
BspPI GGATC 2 cut(s) 196, 635
BsrI ACTGG 1 cut(s) 420
BssECI CCNNGG 2 cut(s) 457, 531
BssHII GCGCGC 1 cut(s) 575
BssMI GATC 4 cut(s) 138, 201, 615, 640
BssT1I CCWWGG 2 cut(s) 457, 531
Bst6I CTCTTC 4 cut(s) 166, 705, 730, 761
BstC8I GCNNGC 2 cut(s) 577, 748
BstDEI CTNAG 1 cut(s) 801
BstF5I GGATG 3 cut(s) 37, 97, 876
BstFNI CGCG 1 cut(s) 577
BstHHI GCGC 3 cut(s) 214, 577, 579
BstKTI GATC 4 cut(s) 141, 204, 618, 643
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 4 cut(s) 138, 201, 615, 640
BstMWI GCNNNNNNNGC 2 cut(s) 376, 747
BstNSI RCATGY 1 cut(s) 826
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 2 cut(s) 581, 623
BstUI CGCG 1 cut(s) 577
BstV1I GCAGC 1 cut(s) 637
BtsCI GGATG 3 cut(s) 37, 97, 876
BtsI GCAGTG 1 cut(s) 782
BtsIMutI CAGTG 2 cut(s) 782, 840
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 577, 748
CciI TCATGA 1 cut(s) 424
CfoI GCGC 3 cut(s) 214, 577, 579
Cfr13I GGNCC 3 cut(s) 170, 350, 593
CseI GACGC 1 cut(s) 557
Csp6I GTAC 4 cut(s) 14, 217, 478, 721
CviAII CATG 3 cut(s) 407, 425, 823
CviQI GTAC 4 cut(s) 14, 217, 478, 721
DdeI CTNAG 1 cut(s) 801
DpnI GATC 4 cut(s) 140, 203, 617, 642
DpnII GATC 4 cut(s) 138, 201, 615, 640
Eam1104I CTCTTC 4 cut(s) 166, 705, 730, 761
EarI CTCTTC 4 cut(s) 166, 705, 730, 761
Eco130I CCWWGG 2 cut(s) 457, 531
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 3 cut(s) 170, 350, 593
Eco57I CTGAAG 2 cut(s) 531, 579
EcoO109I RGGNCCY 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 275
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 2 cut(s) 457, 531
ErhI CCWWGG 2 cut(s) 457, 531
FaeI CATG 3 cut(s) 410, 428, 826
FalI AAGNNNNNCTT 2 cut(s) 217, 249
FaqI GGGAC 1 cut(s) 646
FatI CATG 3 cut(s) 406, 424, 822
FauI CCCGC 1 cut(s) 644
FbaI TGATCA 2 cut(s) 138, 615
Fnu4HI GCNGC 1 cut(s) 626
FokI GGATG 2 cut(s) 44, 104
Fsp4HI GCNGC 1 cut(s) 626
FspBI CTAG 2 cut(s) 165, 645
FspI TGCGCA 1 cut(s) 213
GlaI GCGC 3 cut(s) 213, 576, 578
GluI GCNGC 1 cut(s) 626
HapII CCGG 1 cut(s) 310
HgaI GACGC 1 cut(s) 557
HhaI GCGC 3 cut(s) 214, 577, 579
Hin1II CATG 3 cut(s) 410, 428, 826
Hin6I GCGC 3 cut(s) 212, 575, 577
HinP1I GCGC 3 cut(s) 212, 575, 577
HindIII AAGCTT 2 cut(s) 377, 854
HinfI GANTC 4 cut(s) 119, 124, 403, 536
HpaII CCGG 1 cut(s) 310
HphI GGTGA 2 cut(s) 133, 299
Hpy166II GTNNAC 3 cut(s) 670, 828, 838
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 3 cut(s) 400, 425, 862
Hpy8I GTNNAC 3 cut(s) 670, 828, 838
HpyAV CCTTC 3 cut(s) 22, 385, 808
HpyCH4V TGCA 6 cut(s) 67, 263, 625, 681, 775, 811
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 747
HpyF3I CTNAG 1 cut(s) 801
Hsp92II CATG 3 cut(s) 410, 428, 826
HspAI GCGC 3 cut(s) 212, 575, 577
Ksp22I TGATCA 2 cut(s) 138, 615
Kzo9I GATC 4 cut(s) 138, 201, 615, 640
LpnPI CCDG 8 cut(s) 34, 186, 323, 330, 433, 491, 569, 875
Lsp1109I GCAGC 1 cut(s) 637
LweI GCATC 2 cut(s) 76, 310
MaeI CTAG 2 cut(s) 165, 645
MalI GATC 4 cut(s) 140, 203, 617, 642
MboI GATC 4 cut(s) 138, 201, 615, 640
MboII GAAGA 7 cut(s) 16, 37, 142, 153, 722, 747, 778
MluCI AATT 6 cut(s) 18, 275, 288, 330, 611, 757
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 9 cut(s) 178, 468, 606, 641, 685, 706, 731, 774, 787
MseI TTAA 6 cut(s) 156, 287, 366, 437, 609, 788
MslI CAYNNNNRTG 1 cut(s) 686
MspI CCGG 1 cut(s) 310
MspR9I CCNGG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 777
MvnI CGCG 1 cut(s) 577
MwoI GCNNNNNNNGC 2 cut(s) 376, 747
NciI CCSGG 1 cut(s) 311
NdeII GATC 4 cut(s) 138, 201, 615, 640
NlaIII CATG 3 cut(s) 410, 428, 826
NlaIV GGNNCC 2 cut(s) 171, 315
NsbI TGCGCA 1 cut(s) 213
NspI RCATGY 1 cut(s) 826
PagI TCATGA 1 cut(s) 424
PauI GCGCGC 1 cut(s) 575
PctI GAATGC 1 cut(s) 777
PfeI GAWTC 4 cut(s) 119, 124, 403, 536
PkrI GCNGC 1 cut(s) 627
PpuMI RGGWCCY 1 cut(s) 170
PsiI TTATAA 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 171, 315
PspPI GGNCC 3 cut(s) 170, 350, 593
PspPPI RGGWCCY 1 cut(s) 170
PstI CTGCAG 1 cut(s) 627
PteI GCGCGC 1 cut(s) 575
RsaI GTAC 4 cut(s) 15, 218, 479, 722
RsaNI GTAC 4 cut(s) 14, 217, 478, 721
RseI CAYNNNNRTG 1 cut(s) 686
SaqAI TTAA 6 cut(s) 156, 287, 366, 437, 609, 788
SatI GCNGC 1 cut(s) 626
Sau3AI GATC 4 cut(s) 138, 201, 615, 640
Sau96I GGNCC 3 cut(s) 170, 350, 593
ScaI AGTACT 2 cut(s) 15, 218
ScrFI CCNGG 1 cut(s) 311
SfaNI GCATC 2 cut(s) 76, 310
SfcI CTRYAG 2 cut(s) 581, 623
SinI GGWCC 3 cut(s) 170, 350, 593
SmiMI CAYNNNNRTG 1 cut(s) 686
Sse9I AATT 6 cut(s) 18, 275, 288, 330, 611, 757
SsiI CCGC 3 cut(s) 89, 104, 651
SspMI CTAG 2 cut(s) 165, 645
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 2 cut(s) 457, 531
TaqI TCGA 2 cut(s) 122, 197
TasI AATT 6 cut(s) 18, 275, 288, 330, 611, 757
TatI WGTACW 2 cut(s) 13, 216
TfiI GAWTC 4 cut(s) 119, 124, 403, 536
Tru1I TTAA 6 cut(s) 156, 287, 366, 437, 609, 788
Tru9I TTAA 6 cut(s) 156, 287, 366, 437, 609, 788
TscAI CASTG 2 cut(s) 782, 840
TseI GCWGC 1 cut(s) 625
TspDTI ATGAA 3 cut(s) 17, 287, 770
TspGWI ACGGA 1 cut(s) 403
TspRI CASTG 2 cut(s) 782, 840
VpaK11BI GGWCC 3 cut(s) 170, 350, 593
XapI RAATTY 1 cut(s) 275
XceI RCATGY 1 cut(s) 826
XspI CTAG 2 cut(s) 165, 645
ZrmI AGTACT 2 cut(s) 15, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.