Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Forward (+)

5758014 .. 5760569

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08980.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAAGAAGATTGCGAGTTTCGACATTGGGATGAGTTGATTCCAGATGCTCTTGGTTTAATCTTTAGCCACTTACCTCTTCAAGAAGTACTAACAGTGGTGCCTAGAGTTTGCAAAGCATGGAACAGAGCTGTTACTGGACCTTATTGTTGGCAAGAGATTGACATTGAGCTGTGGAGTAACCGTTTTCACCAGTCTGATCATCTTGACCGGATGCTTGAGATGTTGATCCCTAGAAGCGCTGGCTCTTTGCGAAAACTCTCCGTTACTGGCCTTCGAAATGACTCTATCTTCTCCTTCATTGCACAACATGCTGGTTCACTTAAGACCTTGAAGGTGCCAAGAAGTGGTCTGACTAATTCGGGTGTGGTAAACGTAGCTGAAAAGCTCTCGTCTCTCACTTTCTTGGATTTGAGCTACTGCTGCAAAATAGGCCCAGAGGCGATACAAGCCATAGGAAAACACTGTAAATCACTGAGAGAGTTTTGCAGAAACATGCATCCATTGGATGTAGCAAGTGTTGTCTCTCACGACGATGAAGCTTATGCTATCGCCAATACAATGCCGAAGCTGAAGCGGTTAGAGATAGCTTACCACCGAGTCAGCACAGAAGGAGTACTCAAGATCTTATCGTGCTGTGTTTTTCTTGAGTTCTTGGAACTTAGAGGCTGTTGGGACGTGCAACTTGATAACAAGTTTTTCAAAGAGAAGTTTCCGGATATGAAAGTGTTAGGTCCACGCGTGATCGGATTCTATGATATGATAAATGATTGGGAGGATTGCTGCTCAGATTACTTCTCAGATGGGTCTGATTACTTGGCTTGGGAGTTTTTTGAAGATGGTGTAATGGGAGAGTTCTATGAGGATGAGTTTGAGCATGGTTGGGACGATAATTTTTATGCGGAAAACGCAGTTTTAGACATGGAACCGCATATTTGGCCACCATCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

317

Amino Acids

36.48

Weight (kDa)

4.86

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	17 - 56	1.9e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	100, 337
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccII	CGCG	1 cut(s)	741
AccIII	TCCGGA	1 cut(s)	715
AciI	CCGC	3 cut(s)	577, 902, 929
AclWI	GGATC	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	938
AcuI	CTGAAG	1 cut(s)	593
AfaI	GTAC	2 cut(s)	90, 618
AfeI	AGCGCT	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	347
AflII	CTTAAG	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	739
AgsI	TTSAA	4 cut(s)	83, 334, 703, 836
AjiI	CACGTC	1 cut(s)	679
AluBI	AGCT	8 cut(s)	131, 172, 380, 388, 417, 542, 571, 590
AluI	AGCT	8 cut(s)	131, 172, 380, 388, 417, 542, 571, 590
Alw26I	GTCTC	2 cut(s)	399, 529
AlwI	GGATC	1 cut(s)	223
Aor13HI	TCCGGA	1 cut(s)	715
Aor51HI	AGCGCT	1 cut(s)	241
AoxI	GGCC	3 cut(s)	271, 433, 938
ApeKI	GCWGC	2 cut(s)	423, 783
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	3 cut(s)	140, 434, 734
AsuHPI	GGTGA	1 cut(s)	182
AsuII	TTCGAA	1 cut(s)	277
AvaII	GGWCC	2 cut(s)	140, 734
BalI	TGGCCA	1 cut(s)	940
BanI	GGYRCC	2 cut(s)	100, 337
BbvI	GCAGC	2 cut(s)	410, 770
BccI	CCATC	3 cut(s)	797, 833, 952
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	399, 529
BfaI	CTAG	2 cut(s)	105, 234
BfoI	RGCGCY	1 cut(s)	243
BfrI	CTTAAG	1 cut(s)	323
BglII	AGATCT	1 cut(s)	624
BisI	GCNGC	2 cut(s)	424, 784
BlsI	GCNGC	2 cut(s)	425, 785
BmcAI	AGTACT	2 cut(s)	90, 618
Bme18I	GGWCC	2 cut(s)	140, 734
BmgBI	CACGTC	1 cut(s)	679
BmgT120I	GGNCC	3 cut(s)	140, 434, 734
BmiI	GGNNCC	3 cut(s)	102, 339, 927
BmsI	GCATC	3 cut(s)	37, 204, 508
Bpu14I	TTCGAA	1 cut(s)	277
BpuEI	CTTGAG	3 cut(s)	239, 605, 668
BsaBI	GATNNNNATC	1 cut(s)	227
BsaWI	WCCGGW	2 cut(s)	210, 715
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	3 cut(s)	142, 193, 274
Bse3DI	GCAATG	1 cut(s)	300
Bse8I	GATNNNNATC	1 cut(s)	227
BseAI	TCCGGA	1 cut(s)	715
BseGI	GGATG	5 cut(s)	37, 219, 499, 514, 871
BseJI	GATNNNNATC	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	3 cut(s)	467, 801, 813
BseNI	ACTGG	3 cut(s)	142, 193, 274
BseXI	GCAGC	2 cut(s)	410, 770
Bsh1236I	CGCG	1 cut(s)	741
BshFI	GGCC	3 cut(s)	273, 435, 940
BshNI	GGYRCC	2 cut(s)	100, 337
BsiSI	CCGG	2 cut(s)	211, 716
BslFI	GGGAC	2 cut(s)	689, 899
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	2 cut(s)	399, 529
BsmBI	CGTCTC	1 cut(s)	399
BsmFI	GGGAC	2 cut(s)	689, 899
BsnI	GGCC	3 cut(s)	273, 435, 940
Bsp119I	TTCGAA	1 cut(s)	277
Bsp13I	TCCGGA	1 cut(s)	715
Bsp143I	GATC	4 cut(s)	199, 228, 624, 744
BspACI	CCGC	3 cut(s)	577, 902, 929
BspANI	GGCC	3 cut(s)	273, 435, 940
BspCNI	CTCAG	3 cut(s)	468, 800, 812
BspEI	TCCGGA	1 cut(s)	715
BspFNI	CGCG	1 cut(s)	741
BspLI	GGNNCC	3 cut(s)	102, 339, 927
BspPI	GGATC	1 cut(s)	223
BspT104I	TTCGAA	1 cut(s)	277
BspT107I	GGYRCC	2 cut(s)	100, 337
BspTI	CTTAAG	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	3 cut(s)	142, 193, 274
BssMI	GATC	4 cut(s)	199, 228, 624, 744
Bst4CI	ACNGT	3 cut(s)	97, 185, 467
Bst6I	CTCTTC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstBI	TTCGAA	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	4 cut(s)	476, 662, 787, 799
BstF5I	GGATG	5 cut(s)	37, 219, 499, 514, 871
BstFNI	CGCG	1 cut(s)	741
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	4 cut(s)	202, 231, 627, 747
BstMAI	GTCTC	2 cut(s)	399, 529
BstMBI	GATC	4 cut(s)	199, 228, 624, 744
BstMWI	GCNNNNNNNGC	6 cut(s)	311, 423, 432, 449, 908, 937
BstNSI	RCATGY	2 cut(s)	314, 499
BstUI	CGCG	1 cut(s)	741
BstV1I	GCAGC	2 cut(s)	410, 770
BstX2I	RGATCY	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	624
BsuRI	GGCC	3 cut(s)	273, 435, 940
BtrI	CACGTC	1 cut(s)	679
BtsCI	GGATG	5 cut(s)	37, 219, 499, 514, 871
BtsIMutI	CAGTG	3 cut(s)	102, 463, 473
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	3 cut(s)	140, 434, 734
Csp6I	GTAC	2 cut(s)	89, 617
CviAII	CATG	6 cut(s)	120, 311, 496, 878, 922, 951
CviQI	GTAC	2 cut(s)	89, 617
DdeI	CTNAG	4 cut(s)	476, 662, 787, 799
DpnI	GATC	4 cut(s)	201, 230, 626, 746
DpnII	GATC	4 cut(s)	199, 228, 624, 744
EaeI	YGGCCR	1 cut(s)	938
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco47I	GGWCC	2 cut(s)	140, 734
Eco47III	AGCGCT	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	593
EcoT22I	ATGCAT	1 cut(s)	501
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	6 cut(s)	123, 314, 499, 881, 925, 954
FaqI	GGGAC	2 cut(s)	689, 899
FatI	CATG	6 cut(s)	119, 310, 495, 877, 921, 950
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	424, 784
FokI	GGATG	5 cut(s)	44, 226, 486, 521, 878
Fsp4HI	GCNGC	2 cut(s)	424, 784
FspBI	CTAG	2 cut(s)	105, 234
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	2 cut(s)	424, 784
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	273, 435, 940
HapII	CCGG	2 cut(s)	211, 716
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	6 cut(s)	123, 314, 499, 881, 925, 954
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	4 cut(s)	40, 284, 600, 750
HpaII	CCGG	2 cut(s)	211, 716
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	3 cut(s)	320, 373, 737
Hpy188I	TCNGA	6 cut(s)	199, 354, 749, 790, 802, 811
Hpy188III	TCNNGA	7 cut(s)	44, 83, 206, 530, 622, 647, 716
Hpy8I	GTNNAC	3 cut(s)	320, 373, 737
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	4 cut(s)	284, 307, 328, 605
HpyCH4III	ACNGT	3 cut(s)	97, 185, 467
HpyCH4IV	ACGT	2 cut(s)	375, 678
HpyCH4V	TGCA	6 cut(s)	114, 305, 426, 489, 499, 682
HpyF10VI	GCNNNNNNNGC	6 cut(s)	311, 423, 432, 449, 908, 937
HpyF3I	CTNAG	4 cut(s)	476, 662, 787, 799
HpySE526I	ACGT	2 cut(s)	375, 678
Hsp92II	CATG	6 cut(s)	123, 314, 499, 881, 925, 954
HspAI	GCGC	1 cut(s)	240
Kpn2I	TCCGGA	1 cut(s)	715
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	199, 228, 624, 744
LpnPI	CCDG	9 cut(s)	57, 123, 206, 224, 228, 255, 300, 450, 729
Lsp1109I	GCAGC	2 cut(s)	410, 770
LweI	GCATC	3 cut(s)	37, 204, 508
MaeI	CTAG	2 cut(s)	105, 234
MaeII	ACGT	2 cut(s)	375, 678
MaeIII	GTNAC	3 cut(s)	133, 179, 265
MalI	GATC	4 cut(s)	201, 230, 626, 746
MboI	GATC	4 cut(s)	199, 228, 624, 744
MboII	GAAGA	5 cut(s)	17, 20, 71, 283, 848
MflI	RGATCY	1 cut(s)	624
MlsI	TGGCCA	1 cut(s)	940
MluCI	AATT	2 cut(s)	358, 892
MluI	ACGCGT	1 cut(s)	739
MluNI	TGGCCA	1 cut(s)	940
MlyI	GAGTC	2 cut(s)	278, 609
MnlI	CCTC	5 cut(s)	87, 433, 659, 769, 856
Mox20I	TGGCCA	1 cut(s)	940
Mph1103I	ATGCAT	1 cut(s)	501
MroI	TCCGGA	1 cut(s)	715
MscI	TGGCCA	1 cut(s)	940
MseI	TTAA	2 cut(s)	59, 324
MslI	CAYNNNNRTG	3 cut(s)	30, 534, 949
Msp20I	TGGCCA	1 cut(s)	940
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	2 cut(s)	211, 716
MvnI	CGCG	1 cut(s)	741
MwoI	GCNNNNNNNGC	6 cut(s)	311, 423, 432, 449, 908, 937
NdeII	GATC	4 cut(s)	199, 228, 624, 744
NlaIII	CATG	6 cut(s)	123, 314, 499, 881, 925, 954
NlaIV	GGNNCC	3 cut(s)	102, 339, 927
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	2 cut(s)	314, 499
NspV	TTCGAA	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	40, 750
PflMI	CCANNNNNTGG	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	425, 785
PleI	GAGTC	2 cut(s)	278, 608
PpsI	GAGTC	2 cut(s)	278, 608
PspN4I	GGNNCC	3 cut(s)	102, 339, 927
PspPI	GGNCC	3 cut(s)	140, 434, 734
PsuI	RGATCY	1 cut(s)	624
RsaI	GTAC	2 cut(s)	90, 618
RsaNI	GTAC	2 cut(s)	89, 617
RseI	CAYNNNNRTG	3 cut(s)	30, 534, 949
SaqAI	TTAA	2 cut(s)	59, 324
SatI	GCNGC	2 cut(s)	424, 784
Sau3AI	GATC	4 cut(s)	199, 228, 624, 744
Sau96I	GGNCC	3 cut(s)	140, 434, 734
ScaI	AGTACT	2 cut(s)	90, 618
SchI	GAGTC	2 cut(s)	278, 609
SfaNI	GCATC	3 cut(s)	37, 204, 508
SfuI	TTCGAA	1 cut(s)	277
SinI	GGWCC	2 cut(s)	140, 734
SmiMI	CAYNNNNRTG	3 cut(s)	30, 534, 949
SmlI	CTYRAG	4 cut(s)	218, 323, 620, 647
SmoI	CTYRAG	4 cut(s)	218, 323, 620, 647
Sse9I	AATT	2 cut(s)	358, 892
SsiI	CCGC	3 cut(s)	577, 902, 929
SspMI	CTAG	2 cut(s)	105, 234
TaaI	ACNGT	3 cut(s)	97, 185, 467
TaiI	ACGT	2 cut(s)	378, 681
TaqI	TCGA	2 cut(s)	22, 277
TasI	AATT	2 cut(s)	358, 892
TatI	WGTACW	2 cut(s)	88, 616
TfiI	GAWTC	2 cut(s)	40, 750
Tru1I	TTAA	2 cut(s)	59, 324
Tru9I	TTAA	2 cut(s)	59, 324
TscAI	CASTG	3 cut(s)	102, 470, 480
TseI	GCWGC	2 cut(s)	423, 783
TspDTI	ATGAA	3 cut(s)	289, 552, 737
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	3 cut(s)	102, 470, 480
Van91I	CCANNNNNTGG	1 cut(s)	347
Vha464I	CTTAAG	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	140, 734
XceI	RCATGY	2 cut(s)	314, 499
XspI	CTAG	2 cut(s)	105, 234
ZrmI	AGTACT	2 cut(s)	90, 618
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.