Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Reverse (-)

60823353 .. 60824363

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGGTCTGACTGCTGGCAAGAGATAGACATTGAGGAATGGAGTGATAAACAGCCGCAACACCTTGATCGCATGATTCAAATGCTGGTTGCAAGAAGTTGTGGATCAATGAGAAAGCTGTGTGTTTCCGAACTCCAAAACGACATGATGATTTTCTCCTTCATTGCTGAACATGCTAATACCCTTCAGACCTTGAGACTACCAAGAAGTGAAATGAGTGATTCAGTCGTAGAACAGACAATTGGAAGCTTTTCTAATATCACCTTCTTGGACGTTAGCTGCTGTGATAATATTGGTCATCGTGCTCTAGAGGCCATCGGAATGAACTGTAAATTGCTCATGGGACTGTGCCGGAACCTACATCCAGTGGACTCTCCAGACTTCCATATGAATGATGAGGCTCATGCCATTGCCACCACAATGCCTAGACTGAAGCACCTTGAGATGGCATACCATAAAATCAACACACAAGGGGCTCTTCAATTACTCGAGAGATGCCCTGAGTACTTGGAGAAGAAGTTTCCGAAAGTGAAGATTTTAGGGCCTCTTGATATGGAGGATCACTATGAGGGAAATGAGTGGGATGACAACTCGGATTACTCGGATGGTTCTTCCGAGCATTTAATCTATGAATCTGTGGATGATGACGATGATTTTGATGATGATGGGAATTATGATGACATGGTATGTTGGTGGAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

F-box F-box-like LRR_6 Laminin_G_3

Protein Analysis

234

Amino Acids

26.98

Weight (kDa)

4.47

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	56
AclWI	GGATC	2 cut(s)	112, 567
AcuI	CTGAAG	2 cut(s)	170, 452
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	1 cut(s)	445
AgsI	TTSAA	2 cut(s)	80, 482
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	3 cut(s)	118, 249, 279
AluI	AGCT	3 cut(s)	118, 249, 279
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	2 cut(s)	112, 567
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	2 cut(s)	312, 542
ApeKI	GCWGC	1 cut(s)	279
ArsI	GACNNNNNNTTYG	2 cut(s)	638, 670
Asp700I	GAANNNNTTC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	542
AsuHPI	GGTGA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	4 cut(s)	323, 439, 599, 659
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	308, 426
BisI	GCNGC	2 cut(s)	56, 280
BlsI	GCNGC	2 cut(s)	57, 281
BmcAI	AGTACT	1 cut(s)	506
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	1 cut(s)	356
BmsI	GCATC	1 cut(s)	485
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	2 cut(s)	214, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	2 cut(s)	162, 408
BseGI	GGATG	4 cut(s)	361, 589, 610, 646
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMI	GCAATG	2 cut(s)	162, 408
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	266
BshFI	GGCC	2 cut(s)	314, 544
BsiHKAI	GWGCWC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	2 cut(s)	314, 544
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	2 cut(s)	307, 478
Bsp143I	GATC	3 cut(s)	67, 104, 559
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	2 cut(s)	314, 544
BspCNI	CTCAG	1 cut(s)	493
BspLI	GGNNCC	1 cut(s)	356
BspPI	GGATC	2 cut(s)	112, 567
BspQI	GCTCTTC	1 cut(s)	483
BsrDI	GCAATG	2 cut(s)	162, 408
BsrI	ACTGG	1 cut(s)	365
BssMI	GATC	3 cut(s)	67, 104, 559
Bst4CI	ACNGT	2 cut(s)	329, 348
Bst6I	CTCTTC	1 cut(s)	483
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	501
BstF5I	GGATG	4 cut(s)	361, 589, 610, 646
BstKTI	GATC	3 cut(s)	70, 107, 562
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	3 cut(s)	67, 104, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 311
BstNSI	RCATGY	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	314, 544
BtsCI	GGATG	4 cut(s)	361, 589, 610, 646
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	6 cut(s)	73, 145, 173, 340, 404, 682
CviJI	RGCY	8 cut(s)	55, 118, 249, 279, 314, 401, 476, 544
CviKI_1	RGCY	8 cut(s)	55, 118, 249, 279, 314, 401, 476, 544
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	3 cut(s)	69, 106, 561
DpnII	GATC	3 cut(s)	67, 104, 559
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	478
Eco57I	CTGAAG	2 cut(s)	170, 452
Eco88I	CYCGRG	1 cut(s)	488
EcoO109I	RGGNCCY	1 cut(s)	542
EcoT38I	GRGCYC	1 cut(s)	478
FaeI	CATG	6 cut(s)	76, 148, 176, 343, 407, 685
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	6 cut(s)	72, 144, 172, 339, 403, 681
FauNDI	CATATG	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	56, 280
FokI	GGATG	4 cut(s)	348, 596, 617, 653
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	2 cut(s)	56, 280
FspBI	CTAG	2 cut(s)	308, 426
GluI	GCNGC	2 cut(s)	56, 280
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	314, 544
HapII	CCGG	1 cut(s)	352
Hin1II	CATG	6 cut(s)	76, 148, 176, 343, 407, 685
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	4 cut(s)	76, 221, 371, 632
HpaII	CCGG	1 cut(s)	352
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	8 cut(s)	10, 130, 189, 320, 525, 595, 604, 616
Hpy188III	TCNNGA	4 cut(s)	308, 377, 490, 548
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	3 cut(s)	169, 194, 274
HpyCH4III	ACNGT	2 cut(s)	329, 348
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 311
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	6 cut(s)	76, 148, 176, 343, 407, 685
Kzo9I	GATC	3 cut(s)	67, 104, 559
LguI	GCTCTTC	1 cut(s)	483
LpnPI	CCDG	5 cut(s)	71, 365, 378, 390, 513
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	1 cut(s)	485
MaeI	CTAG	2 cut(s)	308, 426
MaeII	ACGT	1 cut(s)	273
MalI	GATC	3 cut(s)	69, 106, 561
MboI	GATC	3 cut(s)	67, 104, 559
MboII	GAAGA	4 cut(s)	470, 526, 544, 603
MfeI	CAATTG	1 cut(s)	240
MhlI	GDGCHC	2 cut(s)	307, 478
MluCI	AATT	5 cut(s)	240, 332, 482, 670, 700
MlyI	GAGTC	1 cut(s)	365
MnlI	CCTC	6 cut(s)	28, 304, 391, 550, 555, 562
MroXI	GAANNNNTTC	1 cut(s)	250
MseI	TTAA	1 cut(s)	623
MslI	CAYNNNNRTG	3 cut(s)	320, 390, 419
MspI	CCGG	1 cut(s)	352
MunI	CAATTG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	173, 311
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	3 cut(s)	67, 104, 559
NlaIII	CATG	6 cut(s)	76, 148, 176, 343, 407, 685
NlaIV	GGNNCC	1 cut(s)	356
NspI	RCATGY	1 cut(s)	176
PaeR7I	CTCGAG	1 cut(s)	488
PciSI	GCTCTTC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	3 cut(s)	76, 221, 632
PkrI	GCNGC	2 cut(s)	57, 281
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	356
PspPI	GGNCC	1 cut(s)	542
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
RseI	CAYNNNNRTG	3 cut(s)	320, 390, 419
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	623
SatI	GCNGC	2 cut(s)	56, 280
Sau3AI	GATC	3 cut(s)	67, 104, 559
Sau96I	GGNCC	1 cut(s)	542
ScaI	AGTACT	1 cut(s)	506
SchI	GAGTC	1 cut(s)	365
SduI	GDGCHC	2 cut(s)	307, 478
SetI	ASST	9 cut(s)	66, 120, 194, 251, 266, 276, 281, 360, 441
SfaNI	GCATC	1 cut(s)	485
Sfr274I	CTCGAG	1 cut(s)	488
SlaI	CTCGAG	1 cut(s)	488
SmiMI	CAYNNNNRTG	3 cut(s)	320, 390, 419
SmlI	CTYRAG	3 cut(s)	193, 440, 488
SmoI	CTYRAG	3 cut(s)	193, 440, 488
Sse9I	AATT	5 cut(s)	240, 332, 482, 670, 700
SsiI	CCGC	1 cut(s)	56
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	2 cut(s)	308, 426
TaaI	ACNGT	2 cut(s)	329, 348
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	489
TasI	AATT	5 cut(s)	240, 332, 482, 670, 700
TatI	WGTACW	1 cut(s)	504
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	3 cut(s)	76, 221, 632
Tru1I	TTAA	1 cut(s)	623
Tru9I	TTAA	1 cut(s)	623
TscAI	CASTG	1 cut(s)	372
TseI	GCWGC	1 cut(s)	279
TspDTI	ATGAA	4 cut(s)	151, 338, 404, 645
TspRI	CASTG	1 cut(s)	372
XbaI	TCTAGA	1 cut(s)	307
XceI	RCATGY	1 cut(s)	176
XhoI	CTCGAG	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	250
XspI	CTAG	2 cut(s)	308, 426
ZrmI	AGTACT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.