Rorug02G0182400

F-box protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
16970384 .. 16970731
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0182400.1

Sequence Viewer

Length: 249 bp
ATGAATGCACAAGCCATCAAGGAAATCAAGGCAAGGAATGAAGAAGCAAATGGTAAAGAGACAAAGGTGAACACAGTAGATAATCGGTCATCGGCGGGGCAAGGCCAAGAACAGAGGAATGTGCAGGTGGTTCACCAGTCACATCCCTCGCCGATTACAAATACGAGCGGGGGAGTTCTGACCGGTGCTGCCGCAGCTGTGGCATCCACTCTTCGGTCTGCCAAGGAGGCCATTTCAAAAATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

8.57

Weight (kDa)

9.3

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 115
Acc36I ACCTGC 1 cut(s) 115
AccBSI CCGCTC 1 cut(s) 168
AciI CCGC 3 cut(s) 95, 168, 192
AfiI CCNNNNNNNGG 1 cut(s) 213
AgeI ACCGGT 1 cut(s) 182
AgsI TTSAA 1 cut(s) 237
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 2 cut(s) 103, 228
ApeKI GCWGC 2 cut(s) 188, 194
AsiGI ACCGGT 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 79, 125
BbvI GCAGC 2 cut(s) 175, 206
BccI CCATC 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 115
BglI GCCNNNNNGGC 1 cut(s) 227
BisI GCNGC 3 cut(s) 189, 192, 195
BlsI GCNGC 3 cut(s) 190, 193, 196
BmsI GCATC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 142, 203
BseLI CCNNNNNNNGG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 175, 206
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 2 cut(s) 105, 230
BshTI ACCGGT 1 cut(s) 182
BsiSI CCGG 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 105, 230
BspACI CCGC 3 cut(s) 95, 168, 192
BspANI GGCC 2 cut(s) 105, 230
BspMI ACCTGC 1 cut(s) 115
BsrBI CCGCTC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 216
BstF5I GGATG 2 cut(s) 142, 203
BstMAI GTCTC 1 cut(s) 53
BstMWI GCNNNNNNNGC 3 cut(s) 194, 200, 227
BstV1I GCAGC 2 cut(s) 175, 206
BsuRI GGCC 2 cut(s) 105, 230
BtsCI GGATG 2 cut(s) 142, 203
BveI ACCTGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 182
CspAI ACCGGT 1 cut(s) 182
CviJI RGCY 4 cut(s) 14, 105, 197, 230
CviKI_1 RGCY 4 cut(s) 14, 105, 197, 230
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FauI CCCGC 2 cut(s) 88, 161
Fnu4HI GCNGC 3 cut(s) 189, 192, 195
FokI GGATG 2 cut(s) 129, 190
Fsp4HI GCNGC 3 cut(s) 189, 192, 195
GluI GCNGC 3 cut(s) 189, 192, 195
HaeIII GGCC 2 cut(s) 105, 230
HapII CCGG 1 cut(s) 183
HpaII CCGG 1 cut(s) 183
HphI GGTGA 2 cut(s) 79, 125
Hpy166II GTNNAC 2 cut(s) 70, 133
Hpy188I TCNGA 1 cut(s) 180
Hpy8I GTNNAC 2 cut(s) 70, 133
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 8, 124
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 200, 227
LpnPI CCDG 3 cut(s) 110, 149, 196
Lsp1109I GCAGC 2 cut(s) 175, 206
LweI GCATC 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 138
MbiI CCGCTC 1 cut(s) 168
MboII GAAGA 2 cut(s) 53, 203
MluCI AATT 1 cut(s) 240
MnlI CCTC 3 cut(s) 108, 157, 220
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 3 cut(s) 194, 200, 227
NmuCI GTSAC 1 cut(s) 138
PaqCI CACCTGC 1 cut(s) 115
PctI GAATGC 1 cut(s) 10
PinAI ACCGGT 1 cut(s) 182
PkrI GCNGC 3 cut(s) 190, 193, 196
PvuII CAGCTG 1 cut(s) 197
SatI GCNGC 3 cut(s) 189, 192, 195
SetI ASST 3 cut(s) 69, 129, 199
SfaNI GCATC 1 cut(s) 212
Sse9I AATT 1 cut(s) 240
SsiI CCGC 3 cut(s) 95, 168, 192
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 76
TaqII GACCGA 2 cut(s) 75, 204
TasI AATT 1 cut(s) 240
TauI GCSGC 1 cut(s) 194
TseFI GTSAC 1 cut(s) 138
TseI GCWGC 2 cut(s) 188, 194
Tsp45I GTSAC 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 17, 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.