Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Forward (+)

11578106 .. 11582503

Gene Structure 4398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1033400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGAGGAGGACAGTGAATTTCGGCGATGGGACGAGCTCATACCTGACGCACTTGGGCTAATATTTAGGAATCTAACCCTTCAAGAGACACTCACTGTAATCCCAAGGGTGTGCAAGTCATGGGGAAGAGCAGTGTATGGACCTTATTGCTGGCAGGAAATAGACATTGCGGAATGGAGCAAATTTCGTCCGCCAGAGACCATTACTCGAATGCTGCAAATGCTGGTCATAAGAAGCTCGGGTTCGCTCAGAAAGCTCTGCGTTGCTGGCCTTCCCAATGACCAGACTTTCTCCTTTATTGCTGATCATGCCAAATCTCTTCGGACACTGCAGCTGCCAAGAAGCGAAATAAGTGATTCCATAGTGGAACAGGTTGCTGCAAGGCTCTCTTCCATAACTTTCTTGGATGTAAGCTACTGCAAAACTATTGGAGGCCCTGCACTTGAGGCATTTGGAAAGCATTGTAGACATCTCAGAAAGTTGCAGAGATGCATGTACGGATGGGAGGTACTTGACAAGGTTTCTCAAGATGACGAGGCCCTTGCAATAGCGGCCACAATGCCAAAACTCAAGCACCTTGAGATACTGTGTCTGCATGTTAGTACAGAAGCTGTGCATCAGATACTCTTGAACTGCCCTGAGCTCCAGTTATTAGATGTGCGAGGGTGCTATAGTGTGAAACTTGATGAAAAGTTTGTCAAGAAATTCTCGGGGCTGAAGCTGGTGGGACCAGGTTCCGACAATGCGGGCTGGGATGATTGTTCAAATTACTCAGTTTCTTCTGGCTACTTAGCATGGGATGTAATGGATGATGATTTTGACGAAGAGATGTTAGATGAGGCTTGGGAAGACGACCTTAGTATGGAGGATGTAGAAATGAGGTTCTATGATGGTTTTTATCTCGATAATGGTGGGTTCGATTGGCCCCTATCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

313

Amino Acids

35.59

Weight (kDa)

4.71

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	466
AciI	CCGC	4 cut(s)	170, 191, 551, 746
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	3 cut(s)	17, 182, 704
AcuI	CTGAAG	1 cut(s)	737
AfaI	GTAC	3 cut(s)	497, 510, 604
AfiI	CCNNNNNNNGG	1 cut(s)	862
AgsI	TTSAA	3 cut(s)	83, 631, 765
AjnI	CCWGG	1 cut(s)	730
AluBI	AGCT	8 cut(s)	37, 237, 256, 334, 414, 611, 643, 721
AluI	AGCT	8 cut(s)	37, 237, 256, 334, 414, 611, 643, 721
Alw21I	GWGCWC	2 cut(s)	39, 645
Alw26I	GTCTC	2 cut(s)	80, 191
AlwNI	CAGNNNCTG	1 cut(s)	611
Ama87I	CYCGRG	2 cut(s)	238, 709
AoxI	GGCC	5 cut(s)	268, 433, 537, 552, 923
ApeKI	GCWGC	4 cut(s)	214, 331, 334, 377
ApoI	RAATTY	3 cut(s)	17, 182, 704
AspS9I	GGNCC	5 cut(s)	140, 434, 538, 728, 924
AvaI	CYCGRG	2 cut(s)	238, 709
AvaII	GGWCC	2 cut(s)	140, 728
BanII	GRGCYC	2 cut(s)	39, 645
BbsI	GAAGAC	1 cut(s)	855
Bbv12I	GWGCWC	2 cut(s)	39, 645
BbvI	GCAGC	4 cut(s)	201, 321, 343, 364
BccI	CCATC	3 cut(s)	21, 495, 884
BcgI	CGANNNNNNTGC	2 cut(s)	524, 558
BciT130I	CCWGG	1 cut(s)	732
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	80, 191
BfmI	CTRYAG	2 cut(s)	329, 670
BisI	GCNGC	5 cut(s)	215, 332, 335, 378, 552
BlsI	GCNGC	5 cut(s)	216, 333, 336, 379, 553
Bme1390I	CCNGG	1 cut(s)	732
Bme18I	GGWCC	2 cut(s)	140, 728
BmeT110I	CYCGRG	2 cut(s)	238, 709
BmgT120I	GGNCC	5 cut(s)	140, 434, 538, 728, 924
BmiI	GGNNCC	3 cut(s)	729, 736, 926
BmrFI	CCNGG	1 cut(s)	732
BmsI	GCATC	2 cut(s)	479, 625
BpiI	GAAGAC	1 cut(s)	855
BpmI	CTGGAG	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	4 cut(s)	464, 510, 554, 599
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	1 cut(s)	862
Bse1I	ACTGG	1 cut(s)	646
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	732
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	6 cut(s)	412, 506, 760, 805, 814, 874
BseLI	CCNNNNNNNGG	1 cut(s)	862
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	4 cut(s)	262, 487, 630, 786
BseNI	ACTGG	1 cut(s)	646
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	4 cut(s)	201, 321, 343, 364
BseYI	CCCAGC	1 cut(s)	750
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	5 cut(s)	270, 435, 539, 554, 925
BsiHKAI	GWGCWC	2 cut(s)	39, 645
BsiHKCI	CYCGRG	2 cut(s)	238, 709
BslFI	GGGAC	2 cut(s)	44, 741
BslI	CCNNNNNNNGG	1 cut(s)	862
BsmAI	GTCTC	2 cut(s)	80, 191
BsmFI	GGGAC	2 cut(s)	44, 741
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	5 cut(s)	270, 435, 539, 554, 925
Bso31I	GGTCTC	1 cut(s)	191
BsoBI	CYCGRG	2 cut(s)	238, 709
Bsp1286I	GDGCHC	2 cut(s)	39, 645
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	4 cut(s)	170, 191, 551, 746
BspANI	GGCC	5 cut(s)	270, 435, 539, 554, 925
BspCNI	CTCAG	4 cut(s)	261, 486, 631, 785
BspLI	GGNNCC	3 cut(s)	729, 736, 926
BspMAI	CTGCAG	1 cut(s)	333
BspQI	GCTCTTC	1 cut(s)	121
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	646
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	732
Bst4CI	ACNGT	3 cut(s)	14, 97, 588
Bst6I	CTCTTC	4 cut(s)	121, 324, 394, 819
BstC8I	GCNNGC	3 cut(s)	152, 268, 748
BstDEI	CTNAG	6 cut(s)	248, 473, 639, 772, 790, 857
BstF5I	GGATG	6 cut(s)	412, 506, 760, 805, 814, 874
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	2 cut(s)	80, 191
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	6 cut(s)	220, 253, 267, 308, 446, 551
BstNI	CCWGG	1 cut(s)	732
BstNSI	RCATGY	2 cut(s)	496, 599
BstSCI	CCNGG	1 cut(s)	730
BstSFI	CTRYAG	2 cut(s)	329, 670
BstV1I	GCAGC	4 cut(s)	201, 321, 343, 364
BstV2I	GAAGAC	1 cut(s)	855
BsuRI	GGCC	5 cut(s)	270, 435, 539, 554, 925
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	6 cut(s)	412, 506, 760, 805, 814, 874
BtsI	GCAGTG	2 cut(s)	138, 326
BtsIMutI	CAGTG	4 cut(s)	19, 93, 138, 326
Cac8I	GCNNGC	3 cut(s)	152, 268, 748
CaiI	CAGNNNCTG	1 cut(s)	611
Cfr13I	GGNCC	5 cut(s)	140, 434, 538, 728, 924
CseI	GACGC	1 cut(s)	56
CsiI	ACCWGGT	1 cut(s)	730
Csp6I	GTAC	3 cut(s)	496, 509, 603
CviAII	CATG	6 cut(s)	120, 308, 493, 596, 795, 936
CviQI	GTAC	3 cut(s)	496, 509, 603
DdeI	CTNAG	6 cut(s)	248, 473, 639, 772, 790, 857
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	4 cut(s)	121, 324, 394, 819
EarI	CTCTTC	4 cut(s)	121, 324, 394, 819
EciI	GGCGGA	1 cut(s)	180
Ecl136II	GAGCTC	2 cut(s)	37, 643
Eco130I	CCWWGG	1 cut(s)	104
Eco24I	GRGCYC	2 cut(s)	39, 645
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	2 cut(s)	140, 728
Eco53kI	GAGCTC	2 cut(s)	37, 643
Eco57I	CTGAAG	1 cut(s)	737
Eco88I	CYCGRG	2 cut(s)	238, 709
EcoICRI	GAGCTC	2 cut(s)	37, 643
EcoO109I	RGGNCCY	2 cut(s)	434, 538
EcoRII	CCWGG	1 cut(s)	730
EcoT14I	CCWWGG	1 cut(s)	104
EcoT22I	ATGCAT	1 cut(s)	494
EcoT38I	GRGCYC	2 cut(s)	39, 645
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	6 cut(s)	123, 311, 496, 599, 798, 939
FalI	AAGNNNNNCTT	4 cut(s)	373, 405, 840, 872
FaqI	GGGAC	2 cut(s)	44, 741
FatI	CATG	6 cut(s)	119, 307, 492, 595, 794, 935
FauI	CCCGC	1 cut(s)	739
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	466
Fnu4HI	GCNGC	5 cut(s)	215, 332, 335, 378, 552
FokI	GGATG	6 cut(s)	419, 513, 767, 812, 821, 881
FriOI	GRGCYC	2 cut(s)	39, 645
Fsp4HI	GCNGC	5 cut(s)	215, 332, 335, 378, 552
GluI	GCNGC	5 cut(s)	215, 332, 335, 378, 552
GsaI	CCCAGC	1 cut(s)	754
GsuI	CTGGAG	1 cut(s)	629
HaeIII	GGCC	5 cut(s)	270, 435, 539, 554, 925
HgaI	GACGC	1 cut(s)	56
Hin1II	CATG	6 cut(s)	123, 311, 496, 599, 798, 939
HinfI	GANTC	2 cut(s)	70, 356
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188I	TCNGA	5 cut(s)	251, 324, 476, 621, 739
Hpy188III	TCNNGA	5 cut(s)	83, 527, 628, 700, 902
Hpy8I	GTNNAC	1 cut(s)	467
HpyAV	CCTTC	2 cut(s)	89, 281
HpyCH4III	ACNGT	3 cut(s)	14, 97, 588
HpyF10VI	GCNNNNNNNGC	6 cut(s)	220, 253, 267, 308, 446, 551
HpyF3I	CTNAG	6 cut(s)	248, 473, 639, 772, 790, 857
Hsp92II	CATG	6 cut(s)	123, 311, 496, 599, 798, 939
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	304
LguI	GCTCTTC	1 cut(s)	121
LmnI	GCTCC	2 cut(s)	177, 648
Lsp1109I	GCAGC	4 cut(s)	201, 321, 343, 364
LweI	GCATC	2 cut(s)	479, 625
MabI	ACCWGGT	1 cut(s)	730
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	6 cut(s)	138, 311, 381, 771, 836, 860
MhlI	GDGCHC	2 cut(s)	39, 645
MluCI	AATT	4 cut(s)	17, 182, 704, 766
MmeI	TCCRAC	1 cut(s)	762
MnlI	CCTC	8 cut(s)	425, 439, 499, 529, 656, 832, 859, 873
Mph1103I	ATGCAT	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	732
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	732
MwoI	GCNNNNNNNGC	6 cut(s)	220, 253, 267, 308, 446, 551
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	6 cut(s)	123, 311, 496, 599, 798, 939
NlaIV	GGNNCC	3 cut(s)	729, 736, 926
NsiI	ATGCAT	1 cut(s)	494
NspI	RCATGY	2 cut(s)	496, 599
PciSI	GCTCTTC	1 cut(s)	121
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	70, 356
PkrI	GCNGC	5 cut(s)	216, 333, 336, 379, 553
Psp124BI	GAGCTC	2 cut(s)	39, 645
Psp6I	CCWGG	1 cut(s)	730
PspFI	CCCAGC	1 cut(s)	750
PspGI	CCWGG	1 cut(s)	730
PspN4I	GGNNCC	3 cut(s)	729, 736, 926
PspPI	GGNCC	5 cut(s)	140, 434, 538, 728, 924
PstI	CTGCAG	1 cut(s)	333
PstNI	CAGNNNCTG	1 cut(s)	611
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	3 cut(s)	497, 510, 604
RsaNI	GTAC	3 cut(s)	496, 509, 603
SacI	GAGCTC	2 cut(s)	39, 645
SapI	GCTCTTC	1 cut(s)	121
SatI	GCNGC	5 cut(s)	215, 332, 335, 378, 552
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	5 cut(s)	140, 434, 538, 728, 924
ScrFI	CCNGG	1 cut(s)	732
SduI	GDGCHC	2 cut(s)	39, 645
SexAI	ACCWGGT	1 cut(s)	730
SfaNI	GCATC	2 cut(s)	479, 625
SfcI	CTRYAG	2 cut(s)	329, 670
SinI	GGWCC	2 cut(s)	140, 728
SmlI	CTYRAG	4 cut(s)	443, 525, 569, 578
SmoI	CTYRAG	4 cut(s)	443, 525, 569, 578
Sse9I	AATT	4 cut(s)	17, 182, 704, 766
SsiI	CCGC	4 cut(s)	170, 191, 551, 746
SspI	AATATT	1 cut(s)	63
SstI	GAGCTC	2 cut(s)	39, 645
StyD4I	CCNGG	1 cut(s)	730
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	3 cut(s)	14, 97, 588
TaqI	TCGA	3 cut(s)	208, 903, 918
TasI	AATT	4 cut(s)	17, 182, 704, 766
TatI	WGTACW	1 cut(s)	602
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	2 cut(s)	70, 356
TscAI	CASTG	4 cut(s)	19, 100, 138, 333
TseI	GCWGC	4 cut(s)	214, 331, 334, 377
TspDTI	ATGAA	1 cut(s)	702
TspGWI	ACGGA	1 cut(s)	513
TspRI	CASTG	4 cut(s)	19, 100, 138, 333
VpaK11BI	GGWCC	2 cut(s)	140, 728
XapI	RAATTY	3 cut(s)	17, 182, 704
XceI	RCATGY	2 cut(s)	496, 599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	466
Zsp2I	ATGCAT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.