Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Forward (+)

23479143 .. 23481654

Gene Structure 2512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1186500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGATCCAAATCTTTAAAATGGAAGGGGGAAGCGATTTTCGGCATTGGGACGATTTGATTCCAGATGCATTGGGTCTGATTTTTGGCAATCTCACTCTCCAGGAGATACTGACAGTGATCCCGAGGGTTTGCCAATCCTGGAACAAGGCAGTGTTGGGGCCTTACTGCTGGCAAGAGATTGACATTGAGGACTGGAGTAACAGATGCCAGGCTCACCACCTCGATCGAATGCTTGAAATGCTGATTGCTAGAAGCTGTGGATCGCTCCGAAAGCTCACAGTTTCCGGCCTCCAAAATGACAGAATCTTCTCCCACATTGCTGAGCATACTGGTTCCCTTCAGACCTTGAGACTGCCAAGAAGTGAAATTAGTGATTCTATAGTAGAAAAGACTGCTGGAAGGCTCTCAAATATCACTTTCCTGGATCTTAGCTACTGTGGCAAAATTGGTTTTCGTGCTTTAGAGGCCATCGGAAAGAACTGTAAAATGCTCGTAGCATTGTGTCGGAACATGCACCCATTGGATACAGCAGGCAAGCCTTTGCTGGATGACGAGGCTTGTGCCATTGCCACCACAATGCCAAGGCTCAAGCACCTTGAGATGGCATACCATCTTATCAGCACAGGAAGTGCTCTCCAAATACTCTCGAGCTGCCGCGAGCTCGAGTTCCTGGATTTGAGAGGGTGCTGGGATGTTAAACTTGAGGACAAGTTCCTGAAAGAGAAGTACCCAAAATTGAAGGTTTTGGGGCCTCTTGTTCTGGACTACTATGAGAGGAATGAGTGGGAAGATTGCTCGGATTTCTCCGATGCTTCTGATTATTTGGCATGGGAATTCGTCGCCGGTGAATTGGAGGATTACTATGATGACGACGACGACGAGAGTTATGCCGAGATGTGGGATGATGAAGGCAGGCTGGAGCAGCTTGAGCTGAGGTTCTATGAAGGAATTGATCACCATGAAGATGCAGGAGGAGTTGGTTGGCCTCCATCTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

333

Amino Acids

37.98

Weight (kDa)

4.67

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	657
AciI	CCGC	1 cut(s)	655
AclWI	GGATC	3 cut(s)	112, 268, 432
AcsI	RAATTY	1 cut(s)	833
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	1 cut(s)	728
AfiI	CCNNNNNNNGG	2 cut(s)	601, 897
AgsI	TTSAA	2 cut(s)	236, 739
AjnI	CCWGG	5 cut(s)	99, 137, 207, 420, 669
AluBI	AGCT	7 cut(s)	255, 274, 432, 651, 661, 925, 931
AluI	AGCT	7 cut(s)	255, 274, 432, 651, 661, 925, 931
Alw21I	GWGCWC	2 cut(s)	634, 663
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	3 cut(s)	112, 268, 432
Ama87I	CYCGRG	3 cut(s)	121, 646, 662
AoxI	GGCC	5 cut(s)	158, 286, 465, 749, 983
ApeKI	GCWGC	2 cut(s)	651, 922
ApoI	RAATTY	1 cut(s)	833
AspS9I	GGNCC	2 cut(s)	158, 749
AsuHPI	GGTGA	3 cut(s)	206, 857, 947
AvaI	CYCGRG	3 cut(s)	121, 646, 662
BanII	GRGCYC	1 cut(s)	663
Bbv12I	GWGCWC	2 cut(s)	634, 663
BbvCI	CCTCAGC	1 cut(s)	932
BbvI	GCAGC	2 cut(s)	638, 934
BccI	CCATC	4 cut(s)	476, 595, 618, 997
BcgI	CGANNNNNNTGC	4 cut(s)	542, 576, 869, 903
BciT130I	CCWGG	5 cut(s)	101, 139, 209, 422, 671
BciVI	GTATCC	1 cut(s)	517
BclI	TGATCA	1 cut(s)	952
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	378
BfuI	GTATCC	1 cut(s)	517
BisI	GCNGC	3 cut(s)	652, 655, 923
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	3 cut(s)	653, 656, 924
Bme1390I	CCNGG	5 cut(s)	101, 139, 209, 422, 671
BmeT110I	CYCGRG	3 cut(s)	121, 646, 662
BmgT120I	GGNCC	2 cut(s)	158, 749
BmiI	GGNNCC	3 cut(s)	159, 334, 750
BmrFI	CCNGG	5 cut(s)	101, 139, 209, 422, 671
BmsI	GCATC	4 cut(s)	55, 194, 799, 955
BpmI	CTGGAG	3 cut(s)	83, 214, 938
Bpu10I	CCTNAGC	1 cut(s)	932
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	5 cut(s)	367, 572, 617, 722, 947
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	122, 581
Bsc4I	CCNNNNNNNGG	2 cut(s)	601, 897
Bse118I	RCCGGY	1 cut(s)	842
Bse1I	ACTGG	2 cut(s)	197, 334
Bse3DI	GCAATG	2 cut(s)	315, 564
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	5 cut(s)	101, 139, 209, 422, 671
BseDI	CCNNGG	2 cut(s)	122, 581
BseGI	GGATG	3 cut(s)	553, 697, 907
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	601, 897
BseMI	GCAATG	2 cut(s)	315, 564
BseMII	CTCAG	2 cut(s)	312, 923
BseNI	ACTGG	2 cut(s)	197, 334
BseRI	GAGGAG	1 cut(s)	987
BseXI	GCAGC	2 cut(s)	638, 934
BseYI	CCCAGC	1 cut(s)	687
Bsh1236I	CGCG	1 cut(s)	657
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	5 cut(s)	160, 288, 467, 751, 985
BsiEI	CGRYCG	1 cut(s)	226
BsiHKAI	GWGCWC	2 cut(s)	634, 663
BsiHKCI	CYCGRG	3 cut(s)	121, 646, 662
BsiSI	CCGG	2 cut(s)	285, 843
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	601, 897
BsmAI	GTCTC	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	5 cut(s)	160, 288, 467, 751, 985
BsoBI	CYCGRG	3 cut(s)	121, 646, 662
Bsp1286I	GDGCHC	2 cut(s)	634, 663
Bsp143I	GATC	6 cut(s)	3, 117, 223, 260, 424, 952
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	1 cut(s)	655
BspANI	GGCC	5 cut(s)	160, 288, 467, 751, 985
BspCNI	CTCAG	2 cut(s)	313, 924
BspFNI	CGCG	1 cut(s)	657
BspLI	GGNNCC	3 cut(s)	159, 334, 750
BspPI	GGATC	3 cut(s)	112, 268, 432
BsrDI	GCAATG	2 cut(s)	315, 564
BsrFI	RCCGGY	1 cut(s)	842
BsrI	ACTGG	2 cut(s)	197, 334
BssAI	RCCGGY	1 cut(s)	842
BssECI	CCNNGG	2 cut(s)	122, 581
BssMI	GATC	6 cut(s)	3, 117, 223, 260, 424, 952
BssT1I	CCWWGG	1 cut(s)	581
Bst2UI	CCWGG	5 cut(s)	101, 139, 209, 422, 671
Bst4CI	ACNGT	4 cut(s)	115, 280, 437, 482
BstC8I	GCNNGC	5 cut(s)	170, 532, 536, 659, 914
BstDEI	CTNAG	4 cut(s)	321, 428, 932, 996
BstF5I	GGATG	3 cut(s)	553, 697, 907
BstFNI	CGCG	1 cut(s)	657
BstKTI	GATC	6 cut(s)	6, 120, 226, 263, 427, 955
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	6 cut(s)	3, 117, 223, 260, 424, 952
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	6 cut(s)	238, 271, 438, 464, 922, 928
BstNI	CCWGG	5 cut(s)	101, 139, 209, 422, 671
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	5 cut(s)	99, 137, 207, 420, 669
BstSFI	CTRYAG	1 cut(s)	378
BstUI	CGCG	1 cut(s)	657
BstV1I	GCAGC	2 cut(s)	638, 934
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BsuI	GTATCC	1 cut(s)	517
BsuRI	GGCC	5 cut(s)	160, 288, 467, 751, 985
BtsCI	GGATG	3 cut(s)	553, 697, 907
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	120, 156
Cac8I	GCNNGC	5 cut(s)	170, 532, 536, 659, 914
Cfr10I	RCCGGY	1 cut(s)	842
Cfr13I	GGNCC	2 cut(s)	158, 749
Csp6I	GTAC	1 cut(s)	727
CviAII	CATG	3 cut(s)	511, 828, 959
CviQI	GTAC	1 cut(s)	727
DdeI	CTNAG	4 cut(s)	321, 428, 932, 996
DpnI	GATC	6 cut(s)	5, 119, 225, 262, 426, 954
DpnII	GATC	6 cut(s)	3, 117, 223, 260, 424, 952
DraI	TTTAAA	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	661
Eco130I	CCWWGG	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	663
Eco53kI	GAGCTC	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	323
Eco88I	CYCGRG	3 cut(s)	121, 646, 662
EcoICRI	GAGCTC	1 cut(s)	661
EcoO109I	RGGNCCY	2 cut(s)	158, 749
EcoRI	GAATTC	1 cut(s)	833
EcoRII	CCWGG	5 cut(s)	99, 137, 207, 420, 669
EcoT14I	CCWWGG	1 cut(s)	581
EcoT22I	ATGCAT	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	663
ErhI	CCWWGG	1 cut(s)	581
FaeI	CATG	3 cut(s)	514, 831, 962
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	3 cut(s)	510, 827, 958
FbaI	TGATCA	1 cut(s)	952
Fnu4HI	GCNGC	3 cut(s)	652, 655, 923
FokI	GGATG	3 cut(s)	560, 704, 914
FriOI	GRGCYC	1 cut(s)	663
Fsp4HI	GCNGC	3 cut(s)	652, 655, 923
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	3 cut(s)	652, 655, 923
GsaI	CCCAGC	1 cut(s)	691
GsuI	CTGGAG	3 cut(s)	83, 214, 938
HaeIII	GGCC	5 cut(s)	160, 288, 467, 751, 985
HapII	CCGG	2 cut(s)	285, 843
Hin1II	CATG	3 cut(s)	514, 831, 962
HinfI	GANTC	3 cut(s)	58, 303, 374
HpaII	CCGG	2 cut(s)	285, 843
HphI	GGTGA	3 cut(s)	206, 857, 947
Hpy188I	TCNGA	8 cut(s)	78, 269, 342, 473, 507, 799, 808, 817
Hpy188III	TCNNGA	5 cut(s)	62, 121, 646, 715, 761
Hpy99I	CGWCG	4 cut(s)	842, 875, 878, 881
HpyAV	CCTTC	6 cut(s)	17, 347, 393, 733, 902, 938
HpyCH4III	ACNGT	4 cut(s)	115, 280, 437, 482
HpyCH4V	TGCA	3 cut(s)	68, 514, 968
HpyF10VI	GCNNNNNNNGC	6 cut(s)	238, 271, 438, 464, 922, 928
HpyF3I	CTNAG	4 cut(s)	321, 428, 932, 996
Hsp92II	CATG	3 cut(s)	514, 831, 962
Ksp22I	TGATCA	1 cut(s)	952
Kzo9I	GATC	6 cut(s)	3, 117, 223, 260, 424, 952
LmnI	GCTCC	2 cut(s)	270, 919
Lsp1109I	GCAGC	2 cut(s)	638, 934
LweI	GCATC	4 cut(s)	55, 194, 799, 955
MaeI	CTAG	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	6 cut(s)	5, 119, 225, 262, 426, 954
MboI	GATC	6 cut(s)	3, 117, 223, 260, 424, 952
MboII	GAAGA	3 cut(s)	298, 800, 974
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	2 cut(s)	634, 663
MluCI	AATT	6 cut(s)	366, 444, 734, 833, 848, 948
MmeI	TCCRAC	1 cut(s)	485
Mph1103I	ATGCAT	1 cut(s)	70
MseI	TTAA	2 cut(s)	15, 696
MslI	CAYNNNNRTG	2 cut(s)	575, 963
MspI	CCGG	2 cut(s)	285, 843
MspR9I	CCNGG	5 cut(s)	101, 139, 209, 422, 671
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	5 cut(s)	101, 139, 209, 422, 671
MvnI	CGCG	1 cut(s)	657
MwoI	GCNNNNNNNGC	6 cut(s)	238, 271, 438, 464, 922, 928
NdeII	GATC	6 cut(s)	3, 117, 223, 260, 424, 952
NlaIII	CATG	3 cut(s)	514, 831, 962
NlaIV	GGNNCC	3 cut(s)	159, 334, 750
NmeAIII	GCCGAG	1 cut(s)	916
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	1 cut(s)	514
PaeR7I	CTCGAG	2 cut(s)	646, 662
PcsI	WCGNNNNNNNCGW	1 cut(s)	876
PctI	GAATGC	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	58, 303, 374
PfoI	TCCNGGA	4 cut(s)	99, 137, 420, 669
PkrI	GCNGC	3 cut(s)	653, 656, 924
Ple19I	CGATCG	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	663
Psp6I	CCWGG	5 cut(s)	99, 137, 207, 420, 669
PspFI	CCCAGC	1 cut(s)	687
PspGI	CCWGG	5 cut(s)	99, 137, 207, 420, 669
PspN4I	GGNNCC	3 cut(s)	159, 334, 750
PspPI	GGNCC	2 cut(s)	158, 749
PspXI	VCTCGAGB	1 cut(s)	662
PsuI	RGATCY	1 cut(s)	424
PvuI	CGATCG	1 cut(s)	226
RsaI	GTAC	1 cut(s)	728
RsaNI	GTAC	1 cut(s)	727
RseI	CAYNNNNRTG	2 cut(s)	575, 963
SacI	GAGCTC	1 cut(s)	663
SaqAI	TTAA	2 cut(s)	15, 696
SatI	GCNGC	3 cut(s)	652, 655, 923
Sau3AI	GATC	6 cut(s)	3, 117, 223, 260, 424, 952
Sau96I	GGNCC	2 cut(s)	158, 749
ScrFI	CCNGG	5 cut(s)	101, 139, 209, 422, 671
SduI	GDGCHC	2 cut(s)	634, 663
SfaNI	GCATC	4 cut(s)	55, 194, 799, 955
SfcI	CTRYAG	1 cut(s)	378
Sfr274I	CTCGAG	2 cut(s)	646, 662
SgrAI	CRCCGGYG	1 cut(s)	842
SlaI	CTCGAG	2 cut(s)	646, 662
SmiMI	CAYNNNNRTG	2 cut(s)	575, 963
SmlI	CTYRAG	7 cut(s)	346, 587, 596, 646, 662, 701, 926
SmoI	CTYRAG	7 cut(s)	346, 587, 596, 646, 662, 701, 926
Sse9I	AATT	6 cut(s)	366, 444, 734, 833, 848, 948
SsiI	CCGC	1 cut(s)	655
SspMI	CTAG	1 cut(s)	249
SstI	GAGCTC	1 cut(s)	663
StyD4I	CCNGG	5 cut(s)	99, 137, 207, 420, 669
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	4 cut(s)	115, 280, 437, 482
TaqI	TCGA	4 cut(s)	222, 226, 647, 663
TasI	AATT	6 cut(s)	366, 444, 734, 833, 848, 948
TauI	GCSGC	1 cut(s)	657
TfiI	GAWTC	3 cut(s)	58, 303, 374
Tru1I	TTAA	2 cut(s)	15, 696
Tru9I	TTAA	2 cut(s)	15, 696
TscAI	CASTG	2 cut(s)	120, 156
TseI	GCWGC	2 cut(s)	651, 922
TspDTI	ATGAA	3 cut(s)	921, 957, 975
TspRI	CASTG	2 cut(s)	120, 156
XapI	RAATTY	1 cut(s)	833
XceI	RCATGY	1 cut(s)	514
XhoI	CTCGAG	2 cut(s)	646, 662
XspI	CTAG	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.